Clone BS04854 Report

Search the DGRC for BS04854

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:48
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptEts96B-RB
Protein status:BS04854.pep: full length peptide match
Sequenced Size:1955

Clone Sequence Records

BS04854.3prime Sequence

979 bp (849 high quality bases) assembled on 2005-12-02

> BS04854.3prime
ATGGTCTAGAAAGCTTTTAGTATTTATGCAATGCGGCGGTATCGTAATAC
TCCGACTTGGCGACTCGTGGGGATTGCGTCTGGGAGTCGCCGGATGTCGG
GGGCGTCTTGGCCAGCGACAGCGTCAACTGGTGCTGGTCACCCTTGCCGG
AACCGGTGGTCAGGTGACCGTAGGCCATGTTGAACAGCGCATCCGGATCG
CAGACGAACCGATAGACGTAGCGCTCTCCGTTCACTTTCTGCATGATACC
CTTCTCGTAGTAGTAGCGCAAACTGCGAGATAACTTGTCGTAGTTCATGG
CGGGTCGATTCTTCTGGAGACCCCAACGCCGGGCCACCTCCTCTGGCTCG
ATCAGCTTGAACTCCATGCCACGACCGGTCCAGGCGATGCAACTGGCACT
GGTCGTGGGCTCATCCAGGAGGGCCACCAGAAACTGCCAGAGCTGCAGCG
AACCCCTGCGCTGGCTGATCGCCTGGCCGTTGCTGCTGGTGGAGATGCCA
TTGCTGGCGTAGAACTGATCCAGGCGCAGTTCCGCATCGCTGGACGTGGT
GGAGTCCACCACATTGGGCCGCAGCGCGGAGGGATAGGTGGATGAGATGG
CCGCGTTGTAGGGACCGCTGTCGTACTTCAGATCTGCATCGCTGACCGCT
GCTAAGGTGGTGGGCGAGAGATCCCTGTACACGGACTGAGACTGCGTCTG
CTGTTGGTGGGCGTAGTGCGAGGGCGTGGCATATACCGCTGAGCTGGATA
TGACCGCCGTATGGCTAAATTTGAAAGCGGATGCGGCATGAAGTGGCGTC
AAGTGGGTGAGAGCCTGCTGCTCCGCCTGCTGATGGCCATGGTGGCCATG
GTGGGAGTGATGGTGGTGCGGATGCAGTGCAGCAGCTTGCTGCAGTTGTT
GCTGGTGTTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCC
TGCTGCTGCTGTTGCTGCTGTGCCGCCGT

BS04854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6892-PA 1914 Ets96B-RA 952..1914 979..17 4790 99.8 Minus
CG6892-PB 1923 Ets96B-RB 961..1923 979..17 4790 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-RC 2804 CG6892-RC 1126..2088 979..17 4800 99.9 Minus
Ets96B-RB 3003 CG6892-RB 1325..2287 979..17 4800 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24796215..24796795 979..399 2890 99.8 Minus
3R 32079331 3R 24796855..24797239 401..17 1925 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:09:20 has no hits.

BS04854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:30 Download gff for BS04854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6892-PA 952..1914 17..979 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:06 Download gff for BS04854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6892-PB 961..1923 17..979 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:14 Download gff for BS04854.3prime
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 1325..2287 17..979 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:05 Download gff for BS04854.3prime
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 1325..2287 17..979 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:05 Download gff for BS04854.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24796215..24796795 399..979 99 -> Minus
3R 24796858..24797239 17..398 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:14 Download gff for BS04854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20621937..20622517 399..979 99 -> Minus
arm_3R 20622580..20622961 17..398 100   Minus

BS04854.5prime Sequence

917 bp (849 high quality bases) assembled on 2005-12-02

> BS04854.5prime
GAAGTTATCAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCC
TTATTCCGCAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTG
CAGCAGACGCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCA
TCCGCACCACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCA
CCATAACCACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCG
GTGGCCAAGGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGA
GCGCAAAAAGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATG
GTCAGGGGCATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCA
CCTATACCACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTC
ATCCTCGCCGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCT
CCGGATCCTCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTC
ACACGGGAATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCA
TCACCATCAGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCA
CGCCGGCAATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTG
AACGCAAGGTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATC
GAGTTTCTTTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACC
CACATCCGCACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCG
CCACCCGCGGGCATTCTGAAAAAGAGCGACGAAGAAGCAACCTCGGCCGC
CGTATACTGCAGCGACG

BS04854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6892-PB 1923 Ets96B-RB 1..901 17..917 4505 100 Plus
CG6892-PA 1914 Ets96B-RA 208..691 62..545 2420 100 Plus
CG6892-PA 1914 Ets96B-RA 691..892 716..917 1010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-RB 3003 CG6892-RB 364..1265 16..917 4510 100 Plus
Ets96B-RC 2804 CG6892-RC 210..1066 61..917 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24792724..24793253 16..545 2650 100 Plus
3R 32079331 3R 24793378..24793549 545..716 860 100 Plus
3R 32079331 3R 24794323..24794444 716..837 610 100 Plus
3R 32079331 3R 24794593..24794642 835..884 250 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:09:03 has no hits.

BS04854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:31 Download gff for BS04854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6892-PB 1..901 17..917 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:08 Download gff for BS04854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6892-PB 1..901 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:29:23 Download gff for BS04854.5prime
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 358..1265 9..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:15 Download gff for BS04854.5prime
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 358..1265 9..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:15 Download gff for BS04854.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24792718..24793253 9..545 99 -> Plus
3R 24793379..24793549 546..716 100 -> Plus
3R 24794324..24794444 717..837 100 -> Plus
3R 24794596..24794642 838..884 100 -> Plus
3R 24796123..24796155 885..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:29:23 Download gff for BS04854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20618440..20618975 9..545 99 -> Plus
arm_3R 20619101..20619271 546..716 100 -> Plus
arm_3R 20620046..20620166 717..837 100 -> Plus
arm_3R 20620318..20620364 838..884 100 -> Plus
arm_3R 20621845..20621877 885..917 100   Plus

BS04854.complete Sequence

1955 bp assembled on 2008-08-15

GenBank Submission: KX799407

> BS04854.complete
GAAGTTATCAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCC
TTATTCCGCAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTG
CAGCAGACGCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCA
TCCGCACCACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCA
CCATAACCACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCG
GTGGCCAAGGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGA
GCGCAAAAAGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATG
GTCAGGGGCATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCA
CCTATACCACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTC
ATCCTCGCCGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCT
CCGGATCCTCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTC
ACACGGGAATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCA
TCACCATCAGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCA
CGCCGGCAATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTG
AACGCAAGGTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATC
GAGTTTCTTTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACC
CACATCCGCACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCG
CCACCCGCGGGCATTCTGAAAAAGAGCGACGAAGAAGCAACCTCGGCCGC
CGTATACTGCAGCGACGTGTCCTCCGGACAGCACTTTCCGCACCACACAA
AGATCGAGCACGCGGACTCCACCACTACGGCGGCACAGCAGCAACAGCAG
CAGCAAGAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACA
CCAGCAACAACTGCAGCAAGCTGCTGCACTGCATCCGCACCACCATCACT
CCCACCATGGCCACCATGGCCATCAGCAGGCGGAGCAGCAGGCTCTCACC
CACTTGACGCCACTTCATGCCGCATCCGCTTTCAAATTTAGCCATACGGC
GGTCATATCCAGCTCAGCGGTATATGCCACGCCCTCGCACTACGCCCACC
AACAGCAGACGCAGTCTCAGTCCGTGTACAGGGATCTCTCGCCCACCACC
TTAGCAGCGGTCAGCGATGCAGATCTGAAGTACGACAGCGGTCCCTACAA
CGCGGCCATCTCATCCACCTATCCCTCCGCGCTGCGGCCCAATGTGGTGG
ACTCCACCACGTCCAGCGATGCGGAACTGCGCCTGGATCAGTTCTACGCC
AGCAATGGCATCTCCACCAGCAGCAACGGCCAGGCGATCAGCCAGCGCAG
GGGTTCGCTGCAGCTCTGGCAGTTTCTGGTGGCCCTCCTGGATGAGCCCA
CGACCAGTGCCAGTTGCATCGCCTGGACCGGTCGTGGCATGGAGTTCAAG
CTGATCGAGCCAGAGGAGGTGGCCCGGCGTTGGGGTCTCCAGAAGAATCG
ACCCGCCATGAACTACGACAAGTTATCTCGCAGTTTGCGCTACTACTACG
AGAAGGGTATCATGCAGAAAGTGAACGGAGAGCGCTACGTCTATCGGTTC
GTCTGCGATCCGGATGCGCTGTTCAACATGGCCTACGGTCACCTGACCAC
CGGTTCCGGCAAGGGTGACCAGCACCAGTTGACGCTGTCGCTGGCCAAGA
CGCCCCCGACATCCGGCGACTCCCAGACGCAATCCCCACGAGTCGCCAAG
TCGGAGTATTACGATACCGCCGCATTGCATAAATACTAAAAGCTTTCTAG
ACCAT

BS04854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-RB 1923 CG6892-PB 1..1923 17..1939 9615 100 Plus
Ets96B-RC 1896 CG6892-PC 18..1896 61..1939 9395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-RB 3003 CG6892-RB 364..2287 16..1939 9620 100 Plus
Ets96B-RC 2804 CG6892-RC 210..2088 61..1939 9395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24796121..24796795 883..1557 3375 100 Plus
3R 32079331 3R 24792724..24793253 16..545 2650 100 Plus
3R 32079331 3R 24796855..24797239 1555..1939 1925 100 Plus
3R 32079331 3R 24793378..24793549 545..716 860 100 Plus
3R 32079331 3R 24794323..24794444 716..837 610 100 Plus
3R 32079331 3R 24794593..24794642 835..884 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:33:41 has no hits.

BS04854.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:21:02 Download gff for BS04854.complete
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 358..2287 9..1939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:45 Download gff for BS04854.complete
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 365..2285 17..1937 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:37 Download gff for BS04854.complete
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 365..2285 17..1937 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:51 Download gff for BS04854.complete
Subject Subject Range Query Range Percent Splice Strand
Ets96B-RB 365..2285 17..1937 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:51 Download gff for BS04854.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24792725..24793253 17..545 100 -> Plus
3R 24793379..24793549 546..716 100 -> Plus
3R 24794324..24794444 717..837 100 -> Plus
3R 24794596..24794642 838..884 100 -> Plus
3R 24796123..24796795 885..1557 100 -> Plus
3R 24796858..24797237 1558..1937 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:45 Download gff for BS04854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20620318..20620364 838..884 100 -> Plus
arm_3R 20618447..20618975 17..545 100 -> Plus
arm_3R 20619101..20619271 546..716 100 -> Plus
arm_3R 20620046..20620166 717..837 100 -> Plus
arm_3R 20621845..20622517 885..1557 100 -> Plus
arm_3R 20622580..20622959 1558..1937 100   Plus

BS04854.pep Sequence

Translation from 16 to 1938

> BS04854.pep
MTISWRALSHFLIPQSDYGEAKTHLEQLQQTLTHLDHPHHHHAHHPHHHL
GLYHGALPNTSTITTDSVVSCVSSTLPAVAKAISASSSCDGLQSERKKCP
ISDLDSGGHGHGQGHGLMEAICAGQKTSPIPPPPPPCCLTLGESSSSPNP
IATAALMNASTSGSSSAGGASASLCNDLTRESSWYAHHHHHHHHHHHQLP
DELVMYATPTPTPAIGKFGLDTSTEGYLNARYNVNVKGVRHDRTSSFFDI
PAVTHPHNHPHPHPHPHPHPYCYRFPSSPPAGILKKSDEEATSAAVYCSD
VSSGQHFPHHTKIEHADSTTTAAQQQQQQQEQQQQQQQQQQQQQHQQQLQ
QAAALHPHHHHSHHGHHGHQQAEQQALTHLTPLHAASAFKFSHTAVISSS
AVYATPSHYAHQQQTQSQSVYRDLSPTTLAAVSDADLKYDSGPYNAAISS
TYPSALRPNVVDSTTSSDAELRLDQFYASNGISTSSNGQAISQRRGSLQL
WQFLVALLDEPTTSASCIAWTGRGMEFKLIEPEEVARRWGLQKNRPAMNY
DKLSRSLRYYYEKGIMQKVNGERYVYRFVCDPDALFNMAYGHLTTGSGKG
DQHQLTLSLAKTPPTSGDSQTQSPRVAKSEYYDTAALHKY*

BS04854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ets96B-PB 640 CG6892-PB 1..640 1..640 3464 100 Plus
Ets96B-PC 631 CG6892-PC 7..631 16..640 3384 100 Plus
pnt-PC 623 CG17077-PC 455..597 443..581 309 45.2 Plus
pnt-PE 625 CG17077-PE 457..599 443..581 309 45.2 Plus
Ets65A-PB 257 CG7018-PB 26..163 433..578 300 44.5 Plus