Clone Sequence Records
BS04854.3prime Sequence
979 bp (849 high quality bases) assembled on 2005-12-02
> BS04854.3prime
ATGGTCTAGAAAGCTTTTAGTATTTATGCAATGCGGCGGTATCGTAATAC
TCCGACTTGGCGACTCGTGGGGATTGCGTCTGGGAGTCGCCGGATGTCGG
GGGCGTCTTGGCCAGCGACAGCGTCAACTGGTGCTGGTCACCCTTGCCGG
AACCGGTGGTCAGGTGACCGTAGGCCATGTTGAACAGCGCATCCGGATCG
CAGACGAACCGATAGACGTAGCGCTCTCCGTTCACTTTCTGCATGATACC
CTTCTCGTAGTAGTAGCGCAAACTGCGAGATAACTTGTCGTAGTTCATGG
CGGGTCGATTCTTCTGGAGACCCCAACGCCGGGCCACCTCCTCTGGCTCG
ATCAGCTTGAACTCCATGCCACGACCGGTCCAGGCGATGCAACTGGCACT
GGTCGTGGGCTCATCCAGGAGGGCCACCAGAAACTGCCAGAGCTGCAGCG
AACCCCTGCGCTGGCTGATCGCCTGGCCGTTGCTGCTGGTGGAGATGCCA
TTGCTGGCGTAGAACTGATCCAGGCGCAGTTCCGCATCGCTGGACGTGGT
GGAGTCCACCACATTGGGCCGCAGCGCGGAGGGATAGGTGGATGAGATGG
CCGCGTTGTAGGGACCGCTGTCGTACTTCAGATCTGCATCGCTGACCGCT
GCTAAGGTGGTGGGCGAGAGATCCCTGTACACGGACTGAGACTGCGTCTG
CTGTTGGTGGGCGTAGTGCGAGGGCGTGGCATATACCGCTGAGCTGGATA
TGACCGCCGTATGGCTAAATTTGAAAGCGGATGCGGCATGAAGTGGCGTC
AAGTGGGTGAGAGCCTGCTGCTCCGCCTGCTGATGGCCATGGTGGCCATG
GTGGGAGTGATGGTGGTGCGGATGCAGTGCAGCAGCTTGCTGCAGTTGTT
GCTGGTGTTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCC
TGCTGCTGCTGTTGCTGCTGTGCCGCCGT
BS04854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6892-PA | 1914 | Ets96B-RA | 952..1914 | 979..17 | 4790 | 99.8 | Minus |
CG6892-PB | 1923 | Ets96B-RB | 961..1923 | 979..17 | 4790 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RC | 2804 | CG6892-RC | 1126..2088 | 979..17 | 4800 | 99.9 | Minus |
Ets96B-RB | 3003 | CG6892-RB | 1325..2287 | 979..17 | 4800 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24796215..24796795 | 979..399 | 2890 | 99.8 | Minus |
3R | 32079331 | 3R | 24796855..24797239 | 401..17 | 1925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:09:20 has no hits.
BS04854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:30 Download gff for
BS04854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6892-PA | 952..1914 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:06 Download gff for
BS04854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6892-PB | 961..1923 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:14 Download gff for
BS04854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 1325..2287 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:05 Download gff for
BS04854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 1325..2287 | 17..979 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:05 Download gff for
BS04854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24796215..24796795 | 399..979 | 99 | -> | Minus |
3R | 24796858..24797239 | 17..398 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:14 Download gff for
BS04854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20621937..20622517 | 399..979 | 99 | -> | Minus |
arm_3R | 20622580..20622961 | 17..398 | 100 | | Minus |
BS04854.5prime Sequence
917 bp (849 high quality bases) assembled on 2005-12-02
> BS04854.5prime
GAAGTTATCAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCC
TTATTCCGCAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTG
CAGCAGACGCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCA
TCCGCACCACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCA
CCATAACCACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCG
GTGGCCAAGGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGA
GCGCAAAAAGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATG
GTCAGGGGCATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCA
CCTATACCACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTC
ATCCTCGCCGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCT
CCGGATCCTCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTC
ACACGGGAATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCA
TCACCATCAGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCA
CGCCGGCAATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTG
AACGCAAGGTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATC
GAGTTTCTTTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACC
CACATCCGCACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCG
CCACCCGCGGGCATTCTGAAAAAGAGCGACGAAGAAGCAACCTCGGCCGC
CGTATACTGCAGCGACG
BS04854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6892-PB | 1923 | Ets96B-RB | 1..901 | 17..917 | 4505 | 100 | Plus |
CG6892-PA | 1914 | Ets96B-RA | 208..691 | 62..545 | 2420 | 100 | Plus |
CG6892-PA | 1914 | Ets96B-RA | 691..892 | 716..917 | 1010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RB | 3003 | CG6892-RB | 364..1265 | 16..917 | 4510 | 100 | Plus |
Ets96B-RC | 2804 | CG6892-RC | 210..1066 | 61..917 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24792724..24793253 | 16..545 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 24793378..24793549 | 545..716 | 860 | 100 | Plus |
3R | 32079331 | 3R | 24794323..24794444 | 716..837 | 610 | 100 | Plus |
3R | 32079331 | 3R | 24794593..24794642 | 835..884 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:09:03 has no hits.
BS04854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:31 Download gff for
BS04854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6892-PB | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:08 Download gff for
BS04854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6892-PB | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:29:23 Download gff for
BS04854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..1265 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:15 Download gff for
BS04854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..1265 | 9..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:15 Download gff for
BS04854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24792718..24793253 | 9..545 | 99 | -> | Plus |
3R | 24793379..24793549 | 546..716 | 100 | -> | Plus |
3R | 24794324..24794444 | 717..837 | 100 | -> | Plus |
3R | 24794596..24794642 | 838..884 | 100 | -> | Plus |
3R | 24796123..24796155 | 885..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:29:23 Download gff for
BS04854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20618440..20618975 | 9..545 | 99 | -> | Plus |
arm_3R | 20619101..20619271 | 546..716 | 100 | -> | Plus |
arm_3R | 20620046..20620166 | 717..837 | 100 | -> | Plus |
arm_3R | 20620318..20620364 | 838..884 | 100 | -> | Plus |
arm_3R | 20621845..20621877 | 885..917 | 100 | | Plus |
BS04854.complete Sequence
1955 bp assembled on 2008-08-15
GenBank Submission: KX799407
> BS04854.complete
GAAGTTATCAGTCGACATGACAATTTCCTGGCGCGCCTTGTCTCATTTCC
TTATTCCGCAGAGCGACTACGGCGAGGCCAAGACGCACCTGGAGCAGCTG
CAGCAGACGCTCACGCACCTGGACCACCCGCACCACCACCACGCACACCA
TCCGCACCACCACCTGGGGCTCTACCATGGCGCCCTGCCCAACACATCCA
CCATAACCACAGACTCGGTGGTTTCCTGTGTCAGCTCCACACTGCCGGCG
GTGGCCAAGGCCATTTCCGCATCCTCCAGCTGCGATGGCCTGCAGTCGGA
GCGCAAAAAGTGCCCCATCAGCGATCTGGATTCAGGTGGTCATGGTCATG
GTCAGGGGCATGGCCTCATGGAGGCCATCTGCGCTGGCCAGAAGACGTCA
CCTATACCACCGCCGCCACCACCTTGCTGCTTGACCCTGGGCGAAAGCTC
ATCCTCGCCGAATCCCATCGCCACGGCCGCCTTGATGAACGCTTCCACCT
CCGGATCCTCGAGCGCAGGCGGAGCAAGTGCCTCTCTCTGCAACGATCTC
ACACGGGAATCTTCCTGGTACGCCCACCATCATCATCACCACCATCACCA
TCACCATCAGTTGCCCGACGAGCTGGTCATGTATGCCACGCCCACTCCCA
CGCCGGCAATCGGGAAATTCGGACTGGACACTTCCACCGAGGGTTACTTG
AACGCAAGGTACAATGTGAATGTCAAAGGCGTGCGGCATGATAGAACATC
GAGTTTCTTTGACATACCCGCTGTGACGCACCCGCACAACCATCCACACC
CACATCCGCACCCACATCCGCACCCGTACTGCTACAGATTTCCATCATCG
CCACCCGCGGGCATTCTGAAAAAGAGCGACGAAGAAGCAACCTCGGCCGC
CGTATACTGCAGCGACGTGTCCTCCGGACAGCACTTTCCGCACCACACAA
AGATCGAGCACGCGGACTCCACCACTACGGCGGCACAGCAGCAACAGCAG
CAGCAAGAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACA
CCAGCAACAACTGCAGCAAGCTGCTGCACTGCATCCGCACCACCATCACT
CCCACCATGGCCACCATGGCCATCAGCAGGCGGAGCAGCAGGCTCTCACC
CACTTGACGCCACTTCATGCCGCATCCGCTTTCAAATTTAGCCATACGGC
GGTCATATCCAGCTCAGCGGTATATGCCACGCCCTCGCACTACGCCCACC
AACAGCAGACGCAGTCTCAGTCCGTGTACAGGGATCTCTCGCCCACCACC
TTAGCAGCGGTCAGCGATGCAGATCTGAAGTACGACAGCGGTCCCTACAA
CGCGGCCATCTCATCCACCTATCCCTCCGCGCTGCGGCCCAATGTGGTGG
ACTCCACCACGTCCAGCGATGCGGAACTGCGCCTGGATCAGTTCTACGCC
AGCAATGGCATCTCCACCAGCAGCAACGGCCAGGCGATCAGCCAGCGCAG
GGGTTCGCTGCAGCTCTGGCAGTTTCTGGTGGCCCTCCTGGATGAGCCCA
CGACCAGTGCCAGTTGCATCGCCTGGACCGGTCGTGGCATGGAGTTCAAG
CTGATCGAGCCAGAGGAGGTGGCCCGGCGTTGGGGTCTCCAGAAGAATCG
ACCCGCCATGAACTACGACAAGTTATCTCGCAGTTTGCGCTACTACTACG
AGAAGGGTATCATGCAGAAAGTGAACGGAGAGCGCTACGTCTATCGGTTC
GTCTGCGATCCGGATGCGCTGTTCAACATGGCCTACGGTCACCTGACCAC
CGGTTCCGGCAAGGGTGACCAGCACCAGTTGACGCTGTCGCTGGCCAAGA
CGCCCCCGACATCCGGCGACTCCCAGACGCAATCCCCACGAGTCGCCAAG
TCGGAGTATTACGATACCGCCGCATTGCATAAATACTAAAAGCTTTCTAG
ACCAT
BS04854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RB | 1923 | CG6892-PB | 1..1923 | 17..1939 | 9615 | 100 | Plus |
Ets96B-RC | 1896 | CG6892-PC | 18..1896 | 61..1939 | 9395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-RB | 3003 | CG6892-RB | 364..2287 | 16..1939 | 9620 | 100 | Plus |
Ets96B-RC | 2804 | CG6892-RC | 210..2088 | 61..1939 | 9395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24796121..24796795 | 883..1557 | 3375 | 100 | Plus |
3R | 32079331 | 3R | 24792724..24793253 | 16..545 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 24796855..24797239 | 1555..1939 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 24793378..24793549 | 545..716 | 860 | 100 | Plus |
3R | 32079331 | 3R | 24794323..24794444 | 716..837 | 610 | 100 | Plus |
3R | 32079331 | 3R | 24794593..24794642 | 835..884 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:33:41 has no hits.
BS04854.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:21:02 Download gff for
BS04854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 358..2287 | 9..1939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:45 Download gff for
BS04854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 365..2285 | 17..1937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:37 Download gff for
BS04854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 365..2285 | 17..1937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:51 Download gff for
BS04854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ets96B-RB | 365..2285 | 17..1937 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:51 Download gff for
BS04854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24792725..24793253 | 17..545 | 100 | -> | Plus |
3R | 24793379..24793549 | 546..716 | 100 | -> | Plus |
3R | 24794324..24794444 | 717..837 | 100 | -> | Plus |
3R | 24794596..24794642 | 838..884 | 100 | -> | Plus |
3R | 24796123..24796795 | 885..1557 | 100 | -> | Plus |
3R | 24796858..24797237 | 1558..1937 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:45 Download gff for
BS04854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20620318..20620364 | 838..884 | 100 | -> | Plus |
arm_3R | 20618447..20618975 | 17..545 | 100 | -> | Plus |
arm_3R | 20619101..20619271 | 546..716 | 100 | -> | Plus |
arm_3R | 20620046..20620166 | 717..837 | 100 | -> | Plus |
arm_3R | 20621845..20622517 | 885..1557 | 100 | -> | Plus |
arm_3R | 20622580..20622959 | 1558..1937 | 100 | | Plus |
BS04854.pep Sequence
Translation from 16 to 1938
> BS04854.pep
MTISWRALSHFLIPQSDYGEAKTHLEQLQQTLTHLDHPHHHHAHHPHHHL
GLYHGALPNTSTITTDSVVSCVSSTLPAVAKAISASSSCDGLQSERKKCP
ISDLDSGGHGHGQGHGLMEAICAGQKTSPIPPPPPPCCLTLGESSSSPNP
IATAALMNASTSGSSSAGGASASLCNDLTRESSWYAHHHHHHHHHHHQLP
DELVMYATPTPTPAIGKFGLDTSTEGYLNARYNVNVKGVRHDRTSSFFDI
PAVTHPHNHPHPHPHPHPHPYCYRFPSSPPAGILKKSDEEATSAAVYCSD
VSSGQHFPHHTKIEHADSTTTAAQQQQQQQEQQQQQQQQQQQQQHQQQLQ
QAAALHPHHHHSHHGHHGHQQAEQQALTHLTPLHAASAFKFSHTAVISSS
AVYATPSHYAHQQQTQSQSVYRDLSPTTLAAVSDADLKYDSGPYNAAISS
TYPSALRPNVVDSTTSSDAELRLDQFYASNGISTSSNGQAISQRRGSLQL
WQFLVALLDEPTTSASCIAWTGRGMEFKLIEPEEVARRWGLQKNRPAMNY
DKLSRSLRYYYEKGIMQKVNGERYVYRFVCDPDALFNMAYGHLTTGSGKG
DQHQLTLSLAKTPPTSGDSQTQSPRVAKSEYYDTAALHKY*
BS04854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ets96B-PB | 640 | CG6892-PB | 1..640 | 1..640 | 3464 | 100 | Plus |
Ets96B-PC | 631 | CG6892-PC | 7..631 | 16..640 | 3384 | 100 | Plus |
pnt-PC | 623 | CG17077-PC | 455..597 | 443..581 | 309 | 45.2 | Plus |
pnt-PE | 625 | CG17077-PE | 457..599 | 443..581 | 309 | 45.2 | Plus |
Ets65A-PB | 257 | CG7018-PB | 26..163 | 433..578 | 300 | 44.5 | Plus |