Clone Sequence Records
BS04917.3prime Sequence
925 bp (838 high quality bases) assembled on 2005-12-02
> BS04917.3prime
ATGGTCTAGAAAGCTTTCAGTGGCTGGCGTCCAGCTCGTGCTCCTCATCG
CTGGGACACTCGTCCATCTCCATGTCGATCAGTTCGTCGTCGTCCTCGTC
GCCGCTGCCGTTGTGCATATTCCGCTGCGATCCTCCCTCGCCGCCCTTCT
CATCCTCCTGCTGCATCCGCTTGTGCTTGGTGCGTCGGTTCTGGAACCAC
ACCTTCACCTGCGTCTCGGACAGATTGAGGTTTTGGGCCAGGGCCTTTCT
CTCTGCCCCCACTACGTACTGGTTGCTCTCAAAGGCGTGCTCCAGCTTCA
GCAGCTGCGACGGCGAGAAGGCGGTGCGGATGCGTTTCGGTTTGCGGAAC
GGGGGCACCAGGAAACTTCCAGGGAATCGGTGTGGGAAGATCCTTCCATG
GCGGCTGAGCAGCCAGGGGTACAGCTGATAGCTATCCCTGGCCATGCCTG
GATTGGGCATAAACTGGGCGGCATGGGGCGGCAGGCCGGCGGCAGCAGCG
GCGGCGGCCGCTGGACCAAGCACATGACCCGCTTGCAGGGCGGCGGCCAT
CTGGAACTGGGCAGCGGCAATGAGATGCGGATTGTGCTGAGGCGGCAGCT
CCGGCGGAGCGTTGATGTAGGGCGGCAGCGCCTTGATGTCCGGCAAGCCG
GGCTGACCCTGCGGCATCGGTGGTCCTCCGGGTCCCATGGGAAAGGGGCG
AACGAGTCCAGCGGGCGGCATGCCCGGCATCATCATGGGTCCAGCTCCTC
CGGGATGCATCATGGCGGGCTTTGGATAATTCGGGGGCGGCTGCTGCTGT
TGCTGCTGTGGCGGTGTGGCATGTGGACTGCTGATCAGCAGAGTGGGCGA
AGACGAGGGCTGCGAGGACTGGGGGCTCACGGATTTGGGAGGCGTGTGCG
GTGGCTTGATGCGCTGGGCGGGAAT
BS04917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2988-PA | 1485 | ems-RA | 579..1485 | 923..17 | 4510 | 99.8 | Minus |
CG9930-PA | 1575 | E5-RA | 1033..1093 | 214..154 | 230 | 95 | Minus |
CG9930-PA | 1575 | E5-RA | 919..992 | 328..255 | 170 | 89.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ems-RA | 2478 | CG2988-RA | 905..1811 | 923..17 | 4520 | 99.9 | Minus |
E5-RA | 2122 | CG9930-RA | 1206..1487 | 438..154 | 605 | 81.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13902757..13903315 | 923..365 | 2780 | 99.8 | Minus |
3R | 32079331 | 3R | 13903604..13903953 | 366..17 | 1750 | 100 | Minus |
3R | 32079331 | 3R | 13868595..13868755 | 205..365 | 295 | 78.9 | Plus |
3R | 32079331 | 3R | 13867980..13868036 | 154..210 | 240 | 94.7 | Plus |
Blast to na_te.dros performed 2015-02-12 04:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7937..7992 | 835..780 | 118 | 67.9 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9381..9436 | 835..780 | 118 | 67.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6875 | 835..769 | 115 | 69.1 | Minus |
BS04917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:38 Download gff for
BS04917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-PA | 577..1485 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:15 Download gff for
BS04917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2988-PA | 577..1485 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:03:55 Download gff for
BS04917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 897..1808 | 14..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:22 Download gff for
BS04917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 903..1814 | 14..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:22 Download gff for
BS04917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13902755..13903313 | 367..925 | 99 | -> | Minus |
3R | 13903604..13903956 | 14..366 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:03:55 Download gff for
BS04917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9729326..9729678 | 14..366 | 99 | | Minus |
arm_3R | 9728477..9729035 | 367..925 | 99 | -> | Minus |
BS04917.5prime Sequence
871 bp (816 high quality bases) assembled on 2005-12-02
> BS04917.5prime
GAAGTTATCAGTCGACATGACTAAGATGATTCCGCCGGTTCCCACCGCCG
CTGCAGCCGTCATGATGCCCACACCAAAGCAGAAGATCGGTTTCAGCATC
GAGTCCATTGTGGGCAATGATGTCAGCACCGCCGGCGGCAATTCGACGCC
CGATCTATCCGGTCCCCAGAGTCCGCCGCCCGGCGAGCGCAATGTGCCCG
GTTCGCCGCCCCAAACGCCACCAGCCACACTCACCTTGATCCCAGGCTCG
CCCCCGCACCATCTGATGGCTCCTCCTGCCCACGGACTGCCCTATCCGCA
TCCGCATGCTCAGCAGCAGCATTTGCAGGCACCACATCCGCATCCGCATC
TATCGCCTGCGCAGCAACATGTGCTCCACCAGCACCTCCTCATGCAGCAG
CAACATCCGGGCACACCCAAGAGCCACCAGGACATTCAGGAGCTGCTGCA
GAGGCTGCACCACAATGCCGCCATGGCCAGCGGCCTGAGTCCGCTGCAGA
CACGCCTCTCCCCCGAAACGGAGCAGCCCCAGATGGCCGTCTCCCTCAAG
CGGGAACGCTCACCTGCACCACCTGCCATGGAGCAGGCCGAGAATCCCGC
CCAGCGCATCCAGCCACCGCACACGCCTCCCAAATCCGTGAGCCCCCAGT
CCTCGCAGCCCTCGTCTTCGCCCACTCTGCTGATCAGCAGTCCACATGCC
ACACCGCCACAGCAGCAACAGCAGCAGCCGCCCCCGAATTATCCAAAGCC
CGCCATGATGCATCCCGGAGGAGCTGGACCCATGATGATGCCGGGCATGC
CGCCCGCTGGACTCGTTCGCCCCTTTCCCATGGGACCGGGAGGACCACCG
ATGCCGCAGGGTCAGCCCCGC
BS04917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2988-PA | 1485 | ems-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ems-RA | 2478 | CG2988-RA | 327..1178 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13902179..13903030 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 09:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6897 | 294..462 | 176 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6945 | 286..491 | 172 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6870 | 299..462 | 164 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6939 | 294..450 | 163 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2524 | 294..465 | 161 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2467 | 294..450 | 154 | 57 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2511 | 250..484 | 153 | 56.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1151 | 312..407 | 139 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2549 | 299..498 | 135 | 54.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6922 | 286..409 | 133 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6889 | 361..532 | 125 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2510 | 299..409 | 120 | 60.9 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7937..7992 | 683..738 | 118 | 67.9 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9381..9436 | 683..738 | 118 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6945 | 294..408 | 116 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6875 | 683..749 | 115 | 69.1 | Plus |
BS04917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:40 Download gff for
BS04917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:16 Download gff for
BS04917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2988-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:21:07 Download gff for
BS04917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 315..1175 | 11..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:14 Download gff for
BS04917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 321..1181 | 11..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:14 Download gff for
BS04917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13902173..13903033 | 11..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:21:07 Download gff for
BS04917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9727895..9728755 | 11..871 | 99 | | Plus |
BS04917.complete Sequence
1517 bp (1517 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ635025
> BS04917.complete
GAAGTTATCAGTCGACATGACTAAGATGATTCCGCCGGTTCCCACCGCCG
CTGCAGCCGTCATGATGCCCACACCAAAGCAGAAGATCGGTTTCAGCATC
GAGTCCATTGTGGGCAATGATGTCAGCACCGCCGGCGGCAATTCGACGCC
CGATCTATCCGGTCCCCAGAGTCCGCCGCCCGGCGAGCGCAATGTGCCCG
GTTCGCCGCCCCAAACGCCACCAGCCACACTCACCTTGATCCCAGGCTCG
CCCCCGCACCATCTGATGGCTCCTCCTGCCCACGGACTGCCCTATCCGCA
TCCGCATGCTCAGCAGCAGCATTTGCAGGCACCACATCCGCATCCGCATC
TATCGCCTGCGCAGCAACATGTGCTCCACCAGCACCTCCTCATGCAGCAG
CAACATCCGGGCACACCCAAGAGCCACCAGGACATTCAGGAGCTGCTGCA
GAGGCTGCACCACAATGCCGCCATGGCCAGCGGCCTGAGTCCGCTGCAGA
CACGCCTCTCCCCCGAAACGGAGCAGCCCCAGATGGCCGTCTCCCTCAAG
CGGGAACGCTCACCTGCACCACCTGCCATGGAGCAGGCCGAGAATCCCGC
CCAGCGCATCCAGCCACCGCACACGCCTCCCAAATCCGTGAGCCCCCAGT
CCTCGCAGCCCTCGTCTTCGCCCACTCTGCTGATCAGCAGTCCACATGCC
ACACCGCCACAGCAGCAACAGCAGCAGCCGCCCCCGAATTATCCAAAGCC
CGCCATGATGCATCCCGGAGGAGCTGGACCCATGATGATGCCGGGCATGC
CGCCCGCTGGACTCGTTCGCCCCTTTCCCATGGGACCCGGAGGACCACCG
ATGCCGCAGGGTCAGCCCGGCTTGCCGGACATCAAGGCGCTGCCGCCCTA
CATCAACGCTCCGCCGGAGCTGCCGCCTCAGCACAATCCGCATCTCATTG
CCGCTGCCCAGTTCCAGATGGCCGCCGCCCTGCAAGCGGGTCATGTGCTT
GGTCCAGCGGCCGCCGCCGCTGCTGCCGCCGGCCTGCCGCCCCATGCCGC
CCAGTTTATGCCCAATCCAGGCATGGCCAGGGATAGCTATCAGCTGTACC
CCTGGCTGCTCAGCCGCCATGGAAGGATCTTCCCACACCGATTCCCTGGA
AGTTTCCTGGTGCCCCCGTTCCGCAAACCGAAACGCATCCGCACCGCCTT
CTCGCCGTCGCAGCTGCTGAAGCTGGAGCACGCCTTTGAGAGCAACCAGT
ACGTAGTGGGGGCAGAGAGAAAGGCCCTGGCCCAAAACCTCAATCTGTCC
GAGACGCAGGTGAAGGTGTGGTTCCAGAACCGACGCACCAAGCACAAGCG
GATGCAGCAGGAGGATGAGAAGGGCGGCGAGGGAGGATCGCAGCGGAATA
TGCACAACGGCAGCGGCGACGAGGACGACGACGAACTGATCGACATGGAG
ATGGACGAGTGTCCCAGCGATGAGGAGCACGAGCTGGACGCCAGCCACTG
AAAGCTTTCTAGACCAT
BS04917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ems-RA | 1485 | CG2988-PA | 1..1485 | 17..1501 | 7425 | 100 | Plus |
E5-RA | 1575 | CG9930-PA | 812..1093 | 1080..1364 | 580 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ems-RA | 2478 | CG2988-RA | 327..1811 | 17..1501 | 7425 | 100 | Plus |
E5-RA | 2122 | CG9930-RA | 1206..1487 | 1080..1364 | 580 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13902179..13903315 | 17..1153 | 5685 | 100 | Plus |
3R | 32079331 | 3R | 13903604..13903953 | 1152..1501 | 1750 | 100 | Plus |
3R | 32079331 | 3R | 13868595..13868755 | 1313..1153 | 295 | 78.9 | Minus |
3R | 32079331 | 3R | 13867980..13868036 | 1364..1308 | 240 | 94.7 | Minus |
Blast to na_te.dros performed 2014-11-27 08:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6897 | 294..462 | 176 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6945 | 286..491 | 172 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6870 | 299..462 | 164 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6939 | 294..450 | 163 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2524 | 294..465 | 161 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2467 | 294..450 | 154 | 57 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2511 | 250..484 | 153 | 56.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1151 | 312..407 | 139 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2549 | 299..498 | 135 | 54.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6922 | 286..409 | 133 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6889 | 361..532 | 125 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2510 | 299..409 | 120 | 60.9 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7937..7992 | 683..738 | 118 | 67.9 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9381..9436 | 683..738 | 118 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6945 | 294..408 | 116 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6875 | 683..749 | 115 | 69.1 | Plus |
BS04917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:04 Download gff for
BS04917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 1..1485 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:00 Download gff for
BS04917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 315..1808 | 11..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:56 Download gff for
BS04917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 321..1804 | 17..1500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:04 Download gff for
BS04917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 315..1808 | 11..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:51 Download gff for
BS04917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ems-RA | 327..1810 | 17..1500 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:51 Download gff for
BS04917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13902179..13903313 | 17..1151 | 100 | -> | Plus |
3R | 13903604..13903952 | 1152..1500 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:56 Download gff for
BS04917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9727901..9729035 | 17..1151 | 100 | -> | Plus |
arm_3R | 9729326..9729674 | 1152..1500 | 100 | | Plus |
BS04917.pep Sequence
Translation from 16 to 1500
> BS04917.pep
MTKMIPPVPTAAAAVMMPTPKQKIGFSIESIVGNDVSTAGGNSTPDLSGP
QSPPPGERNVPGSPPQTPPATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQ
QHLQAPHPHPHLSPAQQHVLHQHLLMQQQHPGTPKSHQDIQELLQRLHHN
AAMASGLSPLQTRLSPETEQPQMAVSLKRERSPAPPAMEQAENPAQRIQP
PHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHP
GGAGPMMMPGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPP
ELPPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPN
PGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKPKRIRTAFSPSQL
LKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRMQQED
EKGGEGGSQRNMHNGSGDEDDDELIDMEMDECPSDEEHELDASH*
BS04917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ems-PA | 494 | CG2988-PA | 1..494 | 1..494 | 2678 | 100 | Plus |
E5-PA | 524 | CG9930-PA | 28..410 | 151..487 | 524 | 39.7 | Plus |
CG10555-PB | 926 | CG10555-PB | 216..527 | 40..352 | 223 | 29.3 | Plus |
CG10555-PA | 926 | CG10555-PA | 216..527 | 40..352 | 223 | 29.3 | Plus |
Antp-PJ | 378 | CG1028-PJ | 43..370 | 95..469 | 204 | 25.1 | Plus |