Clone Sequence Records
BS04921.3prime Sequence
904 bp (837 high quality bases) assembled on 2005-12-02
> BS04921.3prime
ATGGTCTAGAAAGCTTTTACATCTGTGGTAACTGATCAATGGGAGTGGTA
AACTTAAAGTCCTCGGGGAAAAGCTTAGCTGCGTGCGGATACATAAGTTT
GTAGGACTGTCTGATGGTGACGTCGGCCACACCGGCTATATCACCGATTT
CCTTCTGGCTTCTCTTATGCTCGGATGCTTGTGAGGCCATATAGATTGCG
GCTGCGGCCACAGAAATTGGCGAACGTCCCGGTACAATATCCATCTCGAC
GGCTTTCTTTGCAATGTGCGTGGCAGCGCGTTGGACCATGTTCGGCAGGT
CCAAGTTGGCGCAGAAGCGGCACATGAAGTCCGCAGTGGTTATGAGATCC
ACACTTGTCTCGAGAGCCTTCAATGTTAGCTTAAAGCAACGGCCAATCTC
TTTTTTGCTGATCTTGCTGACAGCACATATTTCCTTGAATGTGCGAGGAA
CTCCTTCTTGGCGACAAGCTATATACAGACAAGCGGATGCCTTGGCATCG
TTGGAACGACCCTTGAGGTTCTTTCCATCATGAACCTGTTTGAACAAGTT
GTTGGCCCGATCGACAATGGTTTTGGGCAAGTTAATGCGATCGGCCATCG
AGGATATCTCCTTAAAGGCTGATATGAGGGAGCGATCCGAGCTGCTCATG
GTGCGTCTGTTTTGGTACTTGGGTGCTCCAAAGGCGTCAAAGGATGCGGA
TCCTGTGCCCGGACCAATTATGGTGGACAAGTCGCCGCCACTGAGCAGCG
GATTCTCCGGTCCACCGACACGACTGGGATCCACGCCGCTCTTCTCGTTG
CTAAAGGTACGCCACTCGGAGCCCACATCAATTACGCGGTCCCCAACCAC
CAGACCACACTCGGAGCAAATCATATCGCCAGCCCTGTAGTCCTCGATGA
GCGG
BS04921.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5193-PA | 948 | TfIIB-RA | 61..948 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIB-RB | 1604 | CG5193-RB | 126..1013 | 904..17 | 4440 | 100 | Minus |
TfIIB-RA | 1410 | CG5193-RA | 126..1013 | 904..17 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10431520..10431890 | 904..534 | 1855 | 100 | Minus |
2L | 23513712 | 2L | 10432241..10432525 | 301..17 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 10431942..10432178 | 537..301 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:33:29 has no hits.
BS04921.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:42 Download gff for
BS04921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-PA | 61..948 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:20 Download gff for
BS04921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5193-PA | 61..948 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:06:11 Download gff for
BS04921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 126..1026 | 5..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:17:11 Download gff for
BS04921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 126..1026 | 5..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:17:11 Download gff for
BS04921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10431520..10431888 | 536..904 | 100 | -> | Minus |
2L | 10431944..10432178 | 301..535 | 100 | -> | Minus |
2L | 10432242..10432538 | 5..300 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:06:11 Download gff for
BS04921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10431520..10431888 | 536..904 | 100 | -> | Minus |
arm_2L | 10431944..10432178 | 301..535 | 100 | -> | Minus |
arm_2L | 10432242..10432538 | 5..300 | 98 | | Minus |
BS04921.5prime Sequence
948 bp (814 high quality bases) assembled on 2005-12-02
> BS04921.5prime
GAAGTTATCAGTCGACATGGCATCGACATCGAGACTGGACAACAACAAGG
TGTGCTGCTACGCACACCCCGAATCTCCGCTCATCGAGGACTACAGGGCT
GGCGATATGATTTGCTCCGAGTGTGGTCTGGTGGTTGGGGACCGCGTAAT
TGATGTGGGCTCCGAGTGGCGTACCTTTAGCAACGAGAAGAGCGGCGTGG
ATCCCAGTCGTGTCGGTGGACCGGAGAATCCGCTGCTCAGTGGCGGCGAC
TTGTCCACCATAATTGGTCCGGGCACAGGATCCGCATCCTTTGACGCCTT
TGGAGCACCCAAGTACCAAAACAGACGCACCATGAGCAGCTCGGATCGCT
CCCTCATATCAGCCTTTAAGGAGATATCCTCGATGGCCGATCGCATTAAC
TTGCCCAAAACCATTGTCGATCGGGCCAACAACTTGTTCAAACAGGTTCA
TGATGGAAAGAACCTCAAGGGTCGTTCCAACGATGCCAAGGCATCCGCTT
GTCTGTATATAGCTTGTCGCCAAGAAGGAGTTCCTCGCACATTCAAGGAA
ATATGTGCTGTCAGCAAGATCAGCAAAAAAGAGATTGGCCGTTGCTTTAA
GCTAACATTGAAGGCTCTCGAGACAAGTGTGGATCTCATAACCACTGCGG
ACTTCATGTGCCGCTTCTGCGCCAACTTGGACCTGCCGAACATGGTCCAA
CGCGCTGCCACGCACATTGCAAAGAAAGCCGTCGAGATGGATATTGTACC
GGGACGTTCGCCAATTTCTGTGGCCGCAGCCGCAATCTATATGGCCTCAC
AAGCATCCGAGCATAAGAGAAGCCAGAAGGAAATCGGTGATATAGCCGGT
GTGGCCGACGTCACCATCAGACAGTCCTACAAACTTATGTATCCGCACGC
AGCTAAGCTTTTCCCCGAGGACTTTAAGTTTACCACTCCCATTGATCA
BS04921.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5193-PA | 948 | TfIIB-RA | 1..932 | 17..948 | 4660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIB-RB | 1604 | CG5193-RB | 66..997 | 17..948 | 4660 | 100 | Plus |
TfIIB-RA | 1410 | CG5193-RA | 66..997 | 17..948 | 4660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10431475..10431890 | 32..447 | 2080 | 100 | Plus |
2L | 23513712 | 2L | 10432241..10432509 | 680..948 | 1345 | 100 | Plus |
2L | 23513712 | 2L | 10431942..10432178 | 444..680 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:19:46 has no hits.
BS04921.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:43 Download gff for
BS04921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-PA | 1..931 | 17..947 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:21 Download gff for
BS04921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5193-PA | 1..931 | 17..947 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:17:21 Download gff for
BS04921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 59..996 | 10..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:39 Download gff for
BS04921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 59..996 | 10..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:39 Download gff for
BS04921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10431477..10431888 | 34..445 | 100 | -> | Plus |
2L | 10431944..10432178 | 446..680 | 100 | -> | Plus |
2L | 10432242..10432508 | 681..947 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:17:21 Download gff for
BS04921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10431477..10431888 | 34..445 | 100 | -> | Plus |
arm_2L | 10431944..10432178 | 446..680 | 100 | -> | Plus |
arm_2L | 10432242..10432508 | 681..947 | 100 | | Plus |
BS04921.complete Sequence
980 bp (980 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ635026
> BS04921.complete
GAAGTTATCAGTCGACATGGCATCGACATCGAGACTGGACAACAACAAGG
TGTGCTGCTACGCACACCCCGAATCTCCGCTCATCGAGGACTACAGGGCT
GGCGATATGATTTGCTCCGAGTGTGGTCTGGTGGTTGGGGACCGCGTAAT
TGATGTGGGCTCCGAGTGGCGTACCTTTAGCAACGAGAAGAGCGGCGTGG
ATCCCAGTCGTGTCGGTGGACCGGAGAATCCGCTGCTCAGTGGCGGCGAC
TTGTCCACCATAATTGGTCCGGGCACAGGATCCGCATCCTTTGACGCCTT
TGGAGCACCCAAGTACCAAAACAGACGCACCATGAGCAGCTCGGATCGCT
CCCTCATATCAGCCTTTAAGGAGATATCCTCGATGGCCGATCGCATTAAC
TTGCCCAAAACCATTGTCGATCGGGCCAACAACTTGTTCAAACAGGTTCA
TGATGGAAAGAACCTCAAGGGTCGTTCCAACGATGCCAAGGCATCCGCTT
GTCTGTATATAGCTTGTCGCCAAGAAGGAGTTCCTCGCACATTCAAGGAA
ATATGTGCTGTCAGCAAGATCAGCAAAAAAGAGATTGGCCGTTGCTTTAA
GCTAACATTGAAGGCTCTCGAGACAAGTGTGGATCTCATAACCACTGCGG
ACTTCATGTGCCGCTTCTGCGCCAACTTGGACCTGCCGAACATGGTCCAA
CGCGCTGCCACGCACATTGCAAAGAAAGCCGTCGAGATGGATATTGTACC
GGGACGTTCGCCAATTTCTGTGGCCGCAGCCGCAATCTATATGGCCTCAC
AAGCATCCGAGCATAAGAGAAGCCAGAAGGAAATCGGTGATATAGCCGGT
GTGGCCGACGTCACCATCAGACAGTCCTACAAACTTATGTATCCGCACGC
AGCTAAGCTTTTCCCCGAGGACTTTAAGTTTACCACTCCCATTGATCAGT
TACCACAGATGTAAAAGCTTTCTAGACCAT
BS04921.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIB-RB | 948 | CG5193-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
TfIIB-RA | 948 | CG5193-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIB-RB | 1604 | CG5193-RB | 66..1013 | 17..964 | 4740 | 100 | Plus |
TfIIB-RA | 1410 | CG5193-RA | 66..1013 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10431475..10431890 | 32..447 | 2080 | 100 | Plus |
2L | 23513712 | 2L | 10432241..10432525 | 680..964 | 1425 | 100 | Plus |
2L | 23513712 | 2L | 10431942..10432178 | 444..680 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:53:35 has no hits.
BS04921.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:06 Download gff for
BS04921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:06 Download gff for
BS04921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 53..1020 | 10..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:28 Download gff for
BS04921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 66..1011 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:06 Download gff for
BS04921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 53..1020 | 10..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:52 Download gff for
BS04921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIB-RA | 66..1011 | 17..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:52 Download gff for
BS04921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10431403..10431419 | 17..33 | 100 | -> | Plus |
2L | 10431477..10431888 | 34..445 | 100 | -> | Plus |
2L | 10431944..10432178 | 446..680 | 100 | -> | Plus |
2L | 10432242..10432523 | 681..962 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:28 Download gff for
BS04921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10431403..10431419 | 17..33 | 100 | -> | Plus |
arm_2L | 10431477..10431888 | 34..445 | 100 | -> | Plus |
arm_2L | 10431944..10432178 | 446..680 | 100 | -> | Plus |
arm_2L | 10432242..10432523 | 681..962 | 100 | | Plus |
BS04921.pep Sequence
Translation from 16 to 963
> BS04921.pep
MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSE
WRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKY
QNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNL
KGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLTLKA
LETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPI
SVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP
EDFKFTTPIDQLPQM*
BS04921.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIB-PB | 315 | CG5193-PB | 1..315 | 1..315 | 1626 | 100 | Plus |
TfIIB-PA | 315 | CG5193-PA | 1..315 | 1..315 | 1626 | 100 | Plus |
Brf-PB | 662 | CG31256-PB | 17..263 | 24..286 | 189 | 23.3 | Plus |
Brf-PA | 662 | CG31256-PA | 17..263 | 24..286 | 189 | 23.3 | Plus |