Clone BS04921 Report

Search the DGRC for BS04921

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:49
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptTfIIB-RA
Protein status:BS04921.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04921.3prime Sequence

904 bp (837 high quality bases) assembled on 2005-12-02

> BS04921.3prime
ATGGTCTAGAAAGCTTTTACATCTGTGGTAACTGATCAATGGGAGTGGTA
AACTTAAAGTCCTCGGGGAAAAGCTTAGCTGCGTGCGGATACATAAGTTT
GTAGGACTGTCTGATGGTGACGTCGGCCACACCGGCTATATCACCGATTT
CCTTCTGGCTTCTCTTATGCTCGGATGCTTGTGAGGCCATATAGATTGCG
GCTGCGGCCACAGAAATTGGCGAACGTCCCGGTACAATATCCATCTCGAC
GGCTTTCTTTGCAATGTGCGTGGCAGCGCGTTGGACCATGTTCGGCAGGT
CCAAGTTGGCGCAGAAGCGGCACATGAAGTCCGCAGTGGTTATGAGATCC
ACACTTGTCTCGAGAGCCTTCAATGTTAGCTTAAAGCAACGGCCAATCTC
TTTTTTGCTGATCTTGCTGACAGCACATATTTCCTTGAATGTGCGAGGAA
CTCCTTCTTGGCGACAAGCTATATACAGACAAGCGGATGCCTTGGCATCG
TTGGAACGACCCTTGAGGTTCTTTCCATCATGAACCTGTTTGAACAAGTT
GTTGGCCCGATCGACAATGGTTTTGGGCAAGTTAATGCGATCGGCCATCG
AGGATATCTCCTTAAAGGCTGATATGAGGGAGCGATCCGAGCTGCTCATG
GTGCGTCTGTTTTGGTACTTGGGTGCTCCAAAGGCGTCAAAGGATGCGGA
TCCTGTGCCCGGACCAATTATGGTGGACAAGTCGCCGCCACTGAGCAGCG
GATTCTCCGGTCCACCGACACGACTGGGATCCACGCCGCTCTTCTCGTTG
CTAAAGGTACGCCACTCGGAGCCCACATCAATTACGCGGTCCCCAACCAC
CAGACCACACTCGGAGCAAATCATATCGCCAGCCCTGTAGTCCTCGATGA
GCGG

BS04921.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5193-PA 948 TfIIB-RA 61..948 904..17 4440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIB-RB 1604 CG5193-RB 126..1013 904..17 4440 100 Minus
TfIIB-RA 1410 CG5193-RA 126..1013 904..17 4440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10431520..10431890 904..534 1855 100 Minus
2L 23513712 2L 10432241..10432525 301..17 1425 100 Minus
2L 23513712 2L 10431942..10432178 537..301 1185 100 Minus
Blast to na_te.dros performed on 2015-02-09 02:33:29 has no hits.

BS04921.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:42 Download gff for BS04921.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIB-PA 61..948 17..904 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:20 Download gff for BS04921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5193-PA 61..948 17..904 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:06:11 Download gff for BS04921.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 126..1026 5..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:17:11 Download gff for BS04921.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 126..1026 5..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:17:11 Download gff for BS04921.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10431520..10431888 536..904 100 -> Minus
2L 10431944..10432178 301..535 100 -> Minus
2L 10432242..10432538 5..300 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:06:11 Download gff for BS04921.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10431520..10431888 536..904 100 -> Minus
arm_2L 10431944..10432178 301..535 100 -> Minus
arm_2L 10432242..10432538 5..300 98   Minus

BS04921.5prime Sequence

948 bp (814 high quality bases) assembled on 2005-12-02

> BS04921.5prime
GAAGTTATCAGTCGACATGGCATCGACATCGAGACTGGACAACAACAAGG
TGTGCTGCTACGCACACCCCGAATCTCCGCTCATCGAGGACTACAGGGCT
GGCGATATGATTTGCTCCGAGTGTGGTCTGGTGGTTGGGGACCGCGTAAT
TGATGTGGGCTCCGAGTGGCGTACCTTTAGCAACGAGAAGAGCGGCGTGG
ATCCCAGTCGTGTCGGTGGACCGGAGAATCCGCTGCTCAGTGGCGGCGAC
TTGTCCACCATAATTGGTCCGGGCACAGGATCCGCATCCTTTGACGCCTT
TGGAGCACCCAAGTACCAAAACAGACGCACCATGAGCAGCTCGGATCGCT
CCCTCATATCAGCCTTTAAGGAGATATCCTCGATGGCCGATCGCATTAAC
TTGCCCAAAACCATTGTCGATCGGGCCAACAACTTGTTCAAACAGGTTCA
TGATGGAAAGAACCTCAAGGGTCGTTCCAACGATGCCAAGGCATCCGCTT
GTCTGTATATAGCTTGTCGCCAAGAAGGAGTTCCTCGCACATTCAAGGAA
ATATGTGCTGTCAGCAAGATCAGCAAAAAAGAGATTGGCCGTTGCTTTAA
GCTAACATTGAAGGCTCTCGAGACAAGTGTGGATCTCATAACCACTGCGG
ACTTCATGTGCCGCTTCTGCGCCAACTTGGACCTGCCGAACATGGTCCAA
CGCGCTGCCACGCACATTGCAAAGAAAGCCGTCGAGATGGATATTGTACC
GGGACGTTCGCCAATTTCTGTGGCCGCAGCCGCAATCTATATGGCCTCAC
AAGCATCCGAGCATAAGAGAAGCCAGAAGGAAATCGGTGATATAGCCGGT
GTGGCCGACGTCACCATCAGACAGTCCTACAAACTTATGTATCCGCACGC
AGCTAAGCTTTTCCCCGAGGACTTTAAGTTTACCACTCCCATTGATCA

BS04921.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5193-PA 948 TfIIB-RA 1..932 17..948 4660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIB-RB 1604 CG5193-RB 66..997 17..948 4660 100 Plus
TfIIB-RA 1410 CG5193-RA 66..997 17..948 4660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10431475..10431890 32..447 2080 100 Plus
2L 23513712 2L 10432241..10432509 680..948 1345 100 Plus
2L 23513712 2L 10431942..10432178 444..680 1185 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:19:46 has no hits.

BS04921.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:43 Download gff for BS04921.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIB-PA 1..931 17..947 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:21 Download gff for BS04921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5193-PA 1..931 17..947 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:17:21 Download gff for BS04921.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 59..996 10..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:39 Download gff for BS04921.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 59..996 10..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:39 Download gff for BS04921.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10431477..10431888 34..445 100 -> Plus
2L 10431944..10432178 446..680 100 -> Plus
2L 10432242..10432508 681..947 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:17:21 Download gff for BS04921.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10431477..10431888 34..445 100 -> Plus
arm_2L 10431944..10432178 446..680 100 -> Plus
arm_2L 10432242..10432508 681..947 100   Plus

BS04921.complete Sequence

980 bp (980 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ635026

> BS04921.complete
GAAGTTATCAGTCGACATGGCATCGACATCGAGACTGGACAACAACAAGG
TGTGCTGCTACGCACACCCCGAATCTCCGCTCATCGAGGACTACAGGGCT
GGCGATATGATTTGCTCCGAGTGTGGTCTGGTGGTTGGGGACCGCGTAAT
TGATGTGGGCTCCGAGTGGCGTACCTTTAGCAACGAGAAGAGCGGCGTGG
ATCCCAGTCGTGTCGGTGGACCGGAGAATCCGCTGCTCAGTGGCGGCGAC
TTGTCCACCATAATTGGTCCGGGCACAGGATCCGCATCCTTTGACGCCTT
TGGAGCACCCAAGTACCAAAACAGACGCACCATGAGCAGCTCGGATCGCT
CCCTCATATCAGCCTTTAAGGAGATATCCTCGATGGCCGATCGCATTAAC
TTGCCCAAAACCATTGTCGATCGGGCCAACAACTTGTTCAAACAGGTTCA
TGATGGAAAGAACCTCAAGGGTCGTTCCAACGATGCCAAGGCATCCGCTT
GTCTGTATATAGCTTGTCGCCAAGAAGGAGTTCCTCGCACATTCAAGGAA
ATATGTGCTGTCAGCAAGATCAGCAAAAAAGAGATTGGCCGTTGCTTTAA
GCTAACATTGAAGGCTCTCGAGACAAGTGTGGATCTCATAACCACTGCGG
ACTTCATGTGCCGCTTCTGCGCCAACTTGGACCTGCCGAACATGGTCCAA
CGCGCTGCCACGCACATTGCAAAGAAAGCCGTCGAGATGGATATTGTACC
GGGACGTTCGCCAATTTCTGTGGCCGCAGCCGCAATCTATATGGCCTCAC
AAGCATCCGAGCATAAGAGAAGCCAGAAGGAAATCGGTGATATAGCCGGT
GTGGCCGACGTCACCATCAGACAGTCCTACAAACTTATGTATCCGCACGC
AGCTAAGCTTTTCCCCGAGGACTTTAAGTTTACCACTCCCATTGATCAGT
TACCACAGATGTAAAAGCTTTCTAGACCAT

BS04921.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIB-RB 948 CG5193-PB 1..948 17..964 4740 100 Plus
TfIIB-RA 948 CG5193-PA 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIB-RB 1604 CG5193-RB 66..1013 17..964 4740 100 Plus
TfIIB-RA 1410 CG5193-RA 66..1013 17..964 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10431475..10431890 32..447 2080 100 Plus
2L 23513712 2L 10432241..10432525 680..964 1425 100 Plus
2L 23513712 2L 10431942..10432178 444..680 1185 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:53:35 has no hits.

BS04921.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:06 Download gff for BS04921.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:06 Download gff for BS04921.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 53..1020 10..976 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:28 Download gff for BS04921.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 66..1011 17..962 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:06 Download gff for BS04921.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 53..1020 10..976 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:52 Download gff for BS04921.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIB-RA 66..1011 17..962 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:52 Download gff for BS04921.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10431403..10431419 17..33 100 -> Plus
2L 10431477..10431888 34..445 100 -> Plus
2L 10431944..10432178 446..680 100 -> Plus
2L 10432242..10432523 681..962 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:28 Download gff for BS04921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10431403..10431419 17..33 100 -> Plus
arm_2L 10431477..10431888 34..445 100 -> Plus
arm_2L 10431944..10432178 446..680 100 -> Plus
arm_2L 10432242..10432523 681..962 100   Plus

BS04921.pep Sequence

Translation from 16 to 963

> BS04921.pep
MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSE
WRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKY
QNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNL
KGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLTLKA
LETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPI
SVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP
EDFKFTTPIDQLPQM*

BS04921.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIB-PB 315 CG5193-PB 1..315 1..315 1626 100 Plus
TfIIB-PA 315 CG5193-PA 1..315 1..315 1626 100 Plus
Brf-PB 662 CG31256-PB 17..263 24..286 189 23.3 Plus
Brf-PA 662 CG31256-PA 17..263 24..286 189 23.3 Plus