Clone Sequence Records
BS04932.3prime Sequence
872 bp (828 high quality bases) assembled on 2005-12-02
> BS04932.3prime
ATGGTCTAGAAAGCTTTCAACTGGACTGAAGTGTTAAATAAAATTTATAA
TGTGAAGTAATGAGTATGCTTACCTCCTCCTTTGTGGCCATCCTATTGTT
ATTGCCTTCCATTGCCTCTGATCCTGCAGCTTCCTTCGACTCCTTAGCTT
CCTTTGCTTCCTGTTCCGCCCTCGCCAGTTCCGCCTTCGCCTGCTCCGCC
TCCAGATCCTCGGGCAACTTGATGACCACCTGGGACCTAATGTCGTAATC
GAACTTGGTGATATTATTCACCAGTGGTTTGGCCCAACCAATGTGTAGAA
TGGGAGTCAAGCTATCCTCCTCCCATTGGCAGATGCCGTCGTAGAATCGC
AGCAAATTGGCGAAAACCTCAGAATCTCGTAGAATACTTCTCGCCGAATG
ACCAGAACTTTCTGTTTTCATCACGTACGGTATGAGCTCGTTGGCAATGT
CCAATAGCTCCTTGTAGATCTCCTCGTCATCACGACACTGATACGTATAC
AAACGAATAACGTCCGCCGCATTTGCCCATGCGGCAAAGGCGTCGCGGTA
TTTGAGCAATCGATTGTAGTAGTTCCCCTGGTAGGTATACGGATATACGT
GATGGTTCCGATAGTGGGTCCTCGCCGACTCTATAGCCTCGCGATATAAC
TGCTCGCAACTGATGCTGGGATGCGTGCGATGAATCTCCTCCAGCTCGCC
TAGGGTGCCCAGGGCCATCGGATAGCGTTTGAGGTGGCCCAAATCGTAGA
GTAGCCACAGCAACTGCTGTTGAAGCTCTGCCACCTCCACGCAGTCACTG
TTCGAGGTCAATGAAATATTCAGAGCGGCACAGATGGCCGCCACTTCCAT
GCCACGCTCGCAAAACACCGCC
BS04932.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13778-PB | 1593 | Mnn1-RB | 738..1593 | 872..17 | 4255 | 99.8 | Minus |
CG13778-PC | 2292 | Mnn1-RC | 738..1536 | 872..74 | 3970 | 99.8 | Minus |
CG13778-PA | 2292 | Mnn1-RA | 738..1536 | 872..74 | 3970 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RB | 1927 | CG13778-RB | 1033..1890 | 872..15 | 4275 | 99.9 | Minus |
Mnn1-RA | 4275 | CG13778-RA | 1777..2575 | 872..74 | 3980 | 99.9 | Minus |
Mnn1-RC | 5196 | CG13778-RC | 1777..2575 | 872..74 | 3980 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7058400..7059257 | 872..15 | 4275 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:23:04 has no hits.
BS04932.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:55 Download gff for
BS04932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-PB | 738..1593 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:38 Download gff for
BS04932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13778-PB | 738..1593 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:00:09 Download gff for
BS04932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 1033..1890 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:55 Download gff for
BS04932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 1033..1890 | 15..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:55 Download gff for
BS04932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7058400..7059257 | 15..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:00:09 Download gff for
BS04932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7058400..7059257 | 15..872 | 99 | | Minus |
BS04932.5prime Sequence
881 bp (835 high quality bases) assembled on 2005-12-02
> BS04932.5prime
GAAGTTATCAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTC
CTATGGCGCTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCC
ACGGCCGATGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGA
GCCTGATCTCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTT
TGACGACGGGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCA
GTCGCAGCAGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCAT
CATGGGCAACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCG
GGCTGTATAAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAG
CCCCACCGCCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGAT
CTGGAACTCGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAA
ACCTCTACAGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCT
CTGGCTGTGGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACT
GGCCATCTCCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGG
AAACAATCGAAGTGACATGGCACGGCAAAGGAAGCGAGGATAAGCGGGGG
CAGGATATTCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTGG
CCTGGCGGTGGTTTGCGAGCGTGGCATGGAAGTGGCGGCCATCTGTGCCG
CTCTGAATATTTCATTGACCTCGAACAGTGACTGCGTGGAGGTGGCAGAG
CTTCAACAGCAGTTGCTGTGGCTACTCTACA
BS04932.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13778-PC | 2292 | Mnn1-RC | 1..864 | 17..880 | 4320 | 100 | Plus |
CG13778-PB | 1593 | Mnn1-RB | 1..864 | 17..880 | 4320 | 100 | Plus |
CG13778-PA | 2292 | Mnn1-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RA | 4275 | CG13778-RA | 1039..1903 | 16..880 | 4325 | 100 | Plus |
Mnn1-RB | 1927 | CG13778-RB | 295..1159 | 16..880 | 4325 | 100 | Plus |
Mnn1-RC | 5196 | CG13778-RC | 1039..1903 | 16..880 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7057861..7058327 | 282..748 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 7057406..7057677 | 16..287 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 7058392..7058526 | 746..880 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:45:19 has no hits.
BS04932.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:56 Download gff for
BS04932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:39 Download gff for
BS04932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13778-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:41:16 Download gff for
BS04932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RC | 1039..1903 | 16..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:53 Download gff for
BS04932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RC | 1039..1903 | 16..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:53 Download gff for
BS04932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7057864..7058325 | 285..746 | 100 | -> | Plus |
2L | 7057406..7057674 | 16..284 | 100 | -> | Plus |
2L | 7058393..7058526 | 747..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:41:16 Download gff for
BS04932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7057406..7057674 | 16..284 | 100 | -> | Plus |
arm_2L | 7057864..7058325 | 285..746 | 100 | -> | Plus |
arm_2L | 7058393..7058526 | 747..880 | 100 | | Plus |
BS04932.complete Sequence
1625 bp (1625 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ635027
> BS04932.complete
GAAGTTATCAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTC
CTATGGCGCTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCC
ACGGCCGATGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGA
GCCTGATCTCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTT
TGACGACGGGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCA
GTCGCAGCAGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCAT
CATGGGCAACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCG
GGCTGTATAAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAG
CCCCACCGCCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGAT
CTGGAACTCGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAA
ACCTCTACAGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCT
CTGGCTGTGGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACT
GGCCATCTCCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGG
AAACAATCGAAGTGACATGGCACGGCAAAGGAAGCGAGGATAAGCGGGGG
CAGGATATTCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTGG
CCTGGCGGTGGTTTGCGAGCGTGGCATGGAAGTGGCGGCCATCTGTGCCG
CTCTGAATATTTCATTGACCTCGAACAGTGACTGCGTGGAGGTGGCAGAG
CTTCAACAGCAGTTGCTGTGGCTACTCTACGATTTGGGCCACCTCAAACG
CTATCCGATGGCCCTGGGCACCCTAGGCGAGCTGGAGGAGATTCATCGCA
CGCATCCCAGCATCAGTTGCGAGCAGTTATATCGCGAGGCTATAGAGTCG
GCGAGGACCCACTATCGGAACCATCACGTATATCCGTATACCTACCAGGG
GAACTACTACAATCGATTGCTCAAATACCGCGACGCCTTTGCCGCATGGG
CAAATGCGGCGGACGTTATTCGTTTGTATACGTATCAGTGTCGTGATGAC
GAGGAGATCTACAAGGAGCTATTGGACATTGCCAACGAGCTCATACCGTA
CGTGATGAAAACAGAAAGTTCTGGTCATTCGGCGAGAAGTATTCTACGAG
ATTCTGAGGTTTTCGCCAATTTGCTGCGATTCTACGACGGCATCTGCCAA
TGGGAGGAGGATAGCTTGACTCCCATTCTACACATTGGTTGGGCCAAACC
ACTGGTGAATAATATCACCAAGTTCGATTACGACATTAGGTCCCAGGTGG
TCATCAAGTTGCCCGAGGATCTGGAGGCGGAGCAGGCGAAGGCGGAACTG
GCGAGGGCGGAACAGGAAGCAAAGGAAGCTAAGGAGTCGAAGGAAGCTGC
AGGATCAGAGGCAATGGAAGGCAATAACAATAGGATGGCCACAAAGGAGG
AGGTAAGCATACTCATTACTTCACATTATAAATTTTATTTAACACTTCAG
TCCAGTTGAAAGCTTTCTAGACCAT
BS04932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RB | 1593 | CG13778-PB | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Mnn1-RA | 2292 | CG13778-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Mnn1-RC | 2292 | CG13778-PC | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RB | 1927 | CG13778-RB | 295..1890 | 16..1611 | 7980 | 100 | Plus |
Mnn1-RA | 4275 | CG13778-RA | 1039..2575 | 16..1552 | 7685 | 100 | Plus |
Mnn1-RC | 5196 | CG13778-RC | 1039..2575 | 16..1552 | 7685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7058392..7059257 | 746..1611 | 4330 | 100 | Plus |
2L | 23513712 | 2L | 7057861..7058327 | 282..748 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 7057406..7057677 | 16..287 | 1360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:55:15 has no hits.
BS04932.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:08 Download gff for
BS04932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 1..1593 | 17..1609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:15:03 Download gff for
BS04932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 290..1885 | 16..1611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:57 Download gff for
BS04932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 296..1887 | 17..1608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:08 Download gff for
BS04932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 290..1885 | 16..1611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:03 Download gff for
BS04932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RB | 296..1887 | 17..1608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:03 Download gff for
BS04932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7057407..7057674 | 17..284 | 100 | -> | Plus |
2L | 7057864..7058325 | 285..746 | 100 | -> | Plus |
2L | 7058393..7059254 | 747..1608 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:57 Download gff for
BS04932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7057407..7057674 | 17..284 | 100 | -> | Plus |
arm_2L | 7057864..7058325 | 285..746 | 100 | -> | Plus |
arm_2L | 7058393..7059254 | 747..1608 | 100 | | Plus |
BS04932.pep Sequence
Translation from 16 to 1608
> BS04932.pep
MSTITRSASASPMALNGVIDASLFPLKSTADVINLFRRALTSGIEPDLTL
LSIVVGYIELSLTTGEAAAQAAQAAAAAVAAGDISQATTGGNDIIMGNSV
PFPVVTHELIAGLYKKFQTILSVVEKPKPHRQATREVIKKVSDVIWNSLI
RSSYKDRAHLQNLYSYLSGNKLDCFGVALAVVAGCQLLGYKDVRLAISED
HAWVVFGQKRVETIEVTWHGKGSEDKRGQDIRPGIESGSWLYLGGLAVVC
ERGMEVAAICAALNISLTSNSDCVEVAELQQQLLWLLYDLGHLKRYPMAL
GTLGELEEIHRTHPSISCEQLYREAIESARTHYRNHHVYPYTYQGNYYNR
LLKYRDAFAAWANAADVIRLYTYQCRDDEEIYKELLDIANELIPYVMKTE
SSGHSARSILRDSEVFANLLRFYDGICQWEEDSLTPILHIGWAKPLVNNI
TKFDYDIRSQVVIKLPEDLEAEQAKAELARAEQEAKEAKESKEAAGSEAM
EGNNNRMATKEEVSILITSHYKFYLTLQSS*
BS04932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-PB | 530 | CG13778-PB | 1..530 | 1..530 | 2715 | 100 | Plus |
Mnn1-PA | 763 | CG13778-PA | 1..514 | 1..514 | 2629 | 99.8 | Plus |
Mnn1-PC | 763 | CG13778-PC | 1..514 | 1..514 | 2629 | 99.8 | Plus |