Clone Sequence Records
BS04953.3prime Sequence
405 bp (323 high quality bases) assembled on 2005-12-02
> BS04953.3prime
ATGGTCTAGAAAGCTTCTAAAAGCGCTGCGGCAATATCTCGCTTTTGATG
CCTCTCAGTGCGTGCTTTTTCTTCCGGTGTGTTGATAGGTTGCACGACTG
CTTGAAGGAGGCACTGCACAGTTCGCAATTGAACCGCCGCTCCTTGCTGT
GAACTACCCGATGTAGCTCCATTCTCGACTTATACTTAAACTTCAAACCA
CAAGTCTCGTAATCGCAGACGTACCAGCGTTCTCCGTCATCTGAAGAGAC
AGCACTCCCGGCGCTGGCCGTCGTGCTGTTAGAGTCCTTGGGCAGCTGTT
CCTGACTGGCGGCTAGCATAGCGGCGGCCATAGCCGTCGAAGGAACGACA
GACATGTTTTAGTGCTGTTGCTGCTGTAGAACTTGGGTGGCGTGTTGCTG
ACCGT
BS04953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 16:56:03 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 2269 | CG17172-RB | 879..1268 | 405..17 | 1865 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23106941..23107330 | 405..17 | 1840 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:25:15 has no hits.
BS04953.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:25:32 Download gff for
BS04953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 857..1249 | 12..405 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:16 Download gff for
BS04953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 879..1271 | 12..405 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:16 Download gff for
BS04953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23106941..23107333 | 12..405 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:25:32 Download gff for
BS04953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 85759..86151 | 12..405 | 98 | | Minus |
BS04953.5prime Sequence
321 bp (320 high quality bases) assembled on 2005-12-02
> BS04953.5prime
GAAGTTATCAGTCGACATGGGTTTTCCGCGCATCCTCAGCAAGAACAACA
AGATCTACACCAAGCTGGGCGAGTTCTGTTTGTCGGGGGATAGCTTCTGG
ATTGTTTGTCACACGTGCCAAGAGGAGTTGCAGACACAGGATCAGTTCTG
GAAGCACATACAGGATGAGCATAATTTCATGCACGGGGTGGCAAAGGAAC
ACAGTCGTACATCCAGCTACTGCCTAACGGATGTGGAGGCTGCGGCGGCA
GCAGCAACGCCAGGAAGCAGCTCCCAGCAAGGCGCCACAGCGATCAGTGT
GCCTCTGGCACTTTACACCTG
BS04953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 16:56:04 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 2269 | CG17172-RB | 101..406 | 16..321 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23106103..23106284 | 16..197 | 910 | 100 | Plus |
| X | 23542271 | X | 23106342..23106468 | 195..321 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:44:33 has no hits.
BS04953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:41:09 Download gff for
BS04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 73..384 | 9..321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:48 Download gff for
BS04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 95..406 | 9..321 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:48 Download gff for
BS04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23106097..23106283 | 9..196 | 98 | -> | Plus |
| X | 23106344..23106468 | 197..321 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:41:09 Download gff for
BS04953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 84915..85101 | 9..196 | 98 | -> | Plus |
| XHet | 85162..85286 | 197..321 | 100 | | Plus |
BS04953.complete Sequence
1199 bp assembled on 2012-04-25
GenBank Submission: KX797178
> BS04953.complete
GAAGTTATCAGTCGACATGGGTTTTCCGCGCATCCTCAGCAAGAACAACA
AGATCTACACCAAGCTGGGCGAGTTCTGTTTGTCGGGGGATAGCTTCTGG
ATTGTTTGTCACACGTGCCAAGAGGAGTTGCAGACACAGGATCAGTTCTG
GAAGCACATACAGGATGAGCATAATTTCATGCACGGGGTGGCAAAGGAAC
ACAGTCGTACATCCAGCTACTGCCTAACGGATGTGGAGGCTGCGGCGGCA
GCAGCAACGCCAGGAAGCAGCTCCCAGCAAGGCGCCACAGCGATCAGTGT
GCCTCTGGCACTTTACACCTGCTCAACCAAGTATTCTGAGGAGGAGCAGC
GGGAGGTGGAAATGCACGAACAGCAGGTGCAACACCAAGTGCAACAGCAG
CAAGCGCAGCAGCAGCAAGCGCAGCAGCAACAACACCAACAGTCTCAGCA
GCAAGGGCACCAGCAACACCAGGTTCAACAACAGCAGACCCACCAGCAGC
TCCAACAGCAGCGGGATGTTGCCAAGGAGCTGGCTGAACTCCATGCCAAT
GCGGTAGCTGCCGCTGCAGCCTCCGCAGCTGTGGTATCCACAGGCGAAGG
AACTACCCAAAGTAACAGCGCCATCGACATTAAAATAGAGCCCAGCAGTC
TGACACTTACACCCGAAATGCAGGCTGCTGCAGCAGCTGGGGGGACCATT
TACCATCTGCCACAGCTAGTTCCACCACCTGTACCGCCTCCACCGCCAGG
GTCCGGATTTGTAAGCGTCAGCGCCAGTACCAGCACCTCCAATACGGTCA
GCACCACGCCACCCAATGTTCTACAGCAGCAACAGCAACTAAACATGTCT
GTCGTTCCTTCGACGGCTATGGCCGCCGCTATGCTAGCCGCCAGTCAGGA
ACAGCTGCCCAAGGACTCTAACAGCACGACGGCCAGCGCCGGGAGTGCTG
TCTCTTCAGATGACGGAGAACGCTGGTACGTCTGCGATTACGAGACTTGT
GGTTTGAAGTTTAAGTATAAGTCGAGAATGGAGCTACATCGGGTAGTTCA
CAGCAAGGAGCGGCGGTTCAATTGCGAACTGTGCAGTGCCTCCTTCAAGC
AGTCGTGCAACCTATCAACACACCGGAAGAAAAAGCACGCACTGAGAGGC
ATCAAAAGCGAGATATTGCCGCAGCGCTTTTAGAAGCTTTCTAGACCAT
BS04953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 1167 | CG17172-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
| CG43689-RH | 4857 | CG43689-PH | 2332..2424 | 395..487 | 180 | 79.6 | Plus |
| CG43689-RE | 5121 | CG43689-PE | 2596..2688 | 395..487 | 180 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 2269 | CG17172-RB | 101..1268 | 16..1183 | 5840 | 100 | Plus |
| CG43689-RH | 6858 | CG43689-RH | 2822..2914 | 395..487 | 180 | 79.6 | Plus |
| CG43689-RE | 7038 | CG43689-RE | 3086..3178 | 395..487 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23106342..23107330 | 195..1183 | 4945 | 100 | Plus |
| X | 23542271 | X | 23106103..23106284 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6931 | 342..516 | 347 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6878 | 354..512 | 338 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2518 | 369..592 | 307 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2542 | 391..632 | 306 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 407..579 | 293 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 411..509 | 245 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7030 | 422..730 | 239 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2710..2858 | 368..520 | 197 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2655 | 365..512 | 195 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 446..647 | 181 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2547 | 446..690 | 180 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6635..6950 | 383..716 | 178 | 56.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 54..175 | 395..514 | 163 | 62.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9084..9205 | 395..514 | 163 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 425..497 | 160 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2665 | 422..498 | 153 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2666 | 442..841 | 152 | 54.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 883..1033 | 358..509 | 136 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1112 | 459..512 | 135 | 72.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..206 | 435..522 | 122 | 61.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9236 | 435..522 | 122 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1564 | 450..516 | 114 | 65.7 | Plus |
BS04953.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:25 Download gff for
BS04953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RA | 80..1246 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:45 Download gff for
BS04953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 80..1246 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:56 Download gff for
BS04953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 80..1246 | 17..1183 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:59 Download gff for
BS04953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 102..1268 | 17..1183 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:59 Download gff for
BS04953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23106104..23106283 | 17..196 | 100 | -> | Plus |
| X | 23106344..23107330 | 197..1183 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:56 Download gff for
BS04953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 84922..85101 | 17..196 | 100 | -> | Plus |
| XHet | 85162..86148 | 197..1183 | 100 | | Plus |
BS04953.pep Sequence
Translation from 16 to 1182
> BS04953.pep
MGFPRILSKNNKIYTKLGEFCLSGDSFWIVCHTCQEELQTQDQFWKHIQD
EHNFMHGVAKEHSRTSSYCLTDVEAAAAAATPGSSSQQGATAISVPLALY
TCSTKYSEEEQREVEMHEQQVQHQVQQQQAQQQQAQQQQHQQSQQQGHQQ
HQVQQQQTHQQLQQQRDVAKELAELHANAVAAAAASAAVVSTGEGTTQSN
SAIDIKIEPSSLTLTPEMQAAAAAGGTIYHLPQLVPPPVPPPPPGSGFVS
VSASTSTSNTVSTTPPNVLQQQQQLNMSVVPSTAMAAAMLAASQEQLPKD
SNSTTASAGSAVSSDDGERWYVCDYETCGLKFKYKSRMELHRVVHSKERR
FNCELCSASFKQSCNLSTHRKKKHALRGIKSEILPQRF*
BS04953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-PB | 388 | CG17172-PB | 1..388 | 1..388 | 2009 | 100 | Plus |
| Cf2-PF | 431 | CG11924-PF | 127..431 | 63..376 | 199 | 27.4 | Plus |
| Cf2-PE | 482 | CG11924-PE | 178..482 | 63..376 | 199 | 27.4 | Plus |
| Cf2-PB | 482 | CG11924-PB | 178..482 | 63..376 | 199 | 27.4 | Plus |
| Cf2-PC | 482 | CG11924-PC | 178..482 | 63..376 | 199 | 27.4 | Plus |
