Clone BS05003 Report

Search the DGRC for BS05003

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptSse-RA
Protein status:BS05003.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05003.3prime Sequence

964 bp (831 high quality bases) assembled on 2005-12-02

> BS05003.3prime
ATGGTCTAGAAAGCTTCTATAAAGGCAGCTTTTCCACGGCCAAATTCCAT
GCGGGAAGTCCGCGGCACACGTAAATGCAGCAGTTGTAGATATTCGGCTC
CACTTTTCCTTGCTGTACGAGAGATAGGATAGAGCACAGGCTGCCCAGAT
GGTAGTTGGGTTGATCGTTCATGGTGGGCGTGGTTTCATCTTTTCCTTTT
ATAATGCCATTTTTGAGCCAAGGCACCCGATCAATATGTGTCCACGGAAT
CACTTTGTTATCCCCCGGGGCCAACCAACGACTCAATATTGTCACCGAAA
CAGTATCCATATTACCATCCAAGGCGGGCATGAGAGTACCAACTATCGAA
GGACACAGAGCTCCATGGTAATAATCATGGGCTCCATACAATGCGCTGTA
CAGGCCCGTGCCCAACATGCGTGTAGAATCGCAGCCGAATAGAAAAACAA
CGCTGCGTACCCGAGCCCGGCAAATTATGCGACCATTGACGTACTGCAGC
CCAGAACCGTGACCTGCGTATACAAAGCAATCCGCCTGTAGCGCCTGTTT
CACCATCACCTCCTCATTGGGCACGGTTTCAAAAAGATGCTGCCACTGGG
AGAGCCAGTACTCAAAAAAGCTACGCAGCCTGCGGCCGGAGTTGACCAAA
TCCGCATCTGGGTTTATTACACACATGCCACGTTTAATATTTGTTGTGTA
GTAGCCATGCTTTATGTTTGATTTGTGATTCTGGAACAAGCGCCATAGGC
AATGCAGTGATTTGACGCGGGAGAATTCCTGCACGGTGACTAGTTGTTCC
CAATGGAGGTGGTCTAGACGCTCATCGACTACCAGGATGATGGGAAATCT
TCTGCTCGCCAGGGGCTGACGCTCCTCCACTTCCGCCCAGTCGCTGGCCA
ACCCTTTAAGCATTCGTATGCCGACTGGATCTCATTTTTCGTGCTCGACA
GCTCATAGCAGATG

BS05003.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10583-PA 1905 Sse-RA 1010..1905 912..17 4430 99.7 Minus
CG10583-PA 1905 Sse-RA 983..1009 938..912 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 2177 CG10583-RA 1050..1998 964..17 4645 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5660113..5660439 195..521 1635 100 Plus
3L 28110227 3L 5660497..5660797 522..822 1505 100 Plus
3L 28110227 3L 5659879..5660059 17..197 905 100 Plus
3L 28110227 3L 5660850..5660994 821..964 600 95.9 Plus
Blast to na_te.dros performed on 2015-02-11 10:14:49 has no hits.

BS05003.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:10 Download gff for BS05003.3prime
Subject Subject Range Query Range Percent Splice Strand
Sse-PA 957..1905 17..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:57 Download gff for BS05003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10583-PA 957..1905 17..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:05:25 Download gff for BS05003.3prime
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1050..2006 9..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:27 Download gff for BS05003.3prime
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1050..2006 9..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:27 Download gff for BS05003.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5659871..5660057 9..195 97 <- Plus
3L 5660114..5660439 196..521 100 <- Plus
3L 5660497..5660795 522..820 100 <- Plus
3L 5660850..5660994 821..964 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:05:25 Download gff for BS05003.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5652971..5653157 9..195 97 <- Plus
arm_3L 5653214..5653539 196..521 100 <- Plus
arm_3L 5653597..5653895 522..820 100 <- Plus
arm_3L 5653950..5654094 821..964 96   Plus

BS05003.5prime Sequence

836 bp (752 high quality bases) assembled on 2005-12-02

> BS05003.5prime
GAAGTTATCAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGG
CCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTA
CTGCGCGCCGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTA
CTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCG
AATCGGCGGAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAA
TCAGCCACTAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCA
GAACATCATCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGA
AGCCAATCAACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAG
GATCCTACAGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCC
CCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCA
CCTACTCCGTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTC
ACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAA
AATTTCCAACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGG
TGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGT
AAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTT
TCAGCAAAAACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCT
TTCTGTTCTTTGGCAAAAGATATGACTGCACTGTTG

BS05003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10583-PA 1905 Sse-RA 1..820 17..836 4100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 2177 CG10583-RA 94..913 17..836 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5661267..5661740 757..284 2370 100 Minus
3L 28110227 3L 5661802..5661998 285..89 985 100 Minus
3L 28110227 3L 5661131..5661209 836..758 395 100 Minus
3L 28110227 3L 5662082..5662154 89..17 365 100 Minus
Blast to na_te.dros performed 2015-02-04 03:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 2503..2540 758..721 109 76.3 Minus

BS05003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:11 Download gff for BS05003.5prime
Subject Subject Range Query Range Percent Splice Strand
Sse-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:58 Download gff for BS05003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10583-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:59:40 Download gff for BS05003.5prime
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 87..913 7..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:43:31 Download gff for BS05003.5prime
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 87..913 7..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:43:31 Download gff for BS05003.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5661131..5661209 758..836 100 <- Minus
3L 5661267..5661738 286..757 100 <- Minus
3L 5661802..5661997 90..285 100 <- Minus
3L 5662082..5662161 7..89 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:59:40 Download gff for BS05003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5654231..5654309 758..836 100 <- Minus
arm_3L 5654367..5654838 286..757 100 <- Minus
arm_3L 5654902..5655097 90..285 100 <- Minus
arm_3L 5655182..5655261 7..89 95   Minus

BS05003.complete Sequence

1937 bp assembled on 2008-01-02

GenBank Submission: FJ635029

> BS05003.complete
GAAGTTATCAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGG
CCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTA
CTGCGCGCCGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTA
CTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCG
AATCGGCGGAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAA
TCAGCCACTAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCA
GAACATCATCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGA
AGCCAATCAACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAG
GATCCTACAGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCC
CCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCA
CCTACTCCGTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTC
ACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAA
AATTTCCAACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGG
TGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGT
AAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTT
TCAGCAAAAACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCT
TTCTGTTCTTTGGCAAAAGATATGACTGCACTGTTGTTCAAAAACAAATC
AAAGCCACCTATACTCGTGTTGACGATTTCTGTCTGCTTAATCAATGGGG
TACCCACCAACGTGTTTTACTTTCCCAAGCGGCCTCGCATGCCAATCGAC
TGGAAATCGCAGATCTCAAACTCATCTGCTATGAGCTGTCGAGCAACGAA
AATGAGATCCAGTCGGCATACGAATTGCTTAAGGGTTTGGCCAGCGACTG
GGCGGAAGTGGAGGAGCGTCAGCCCCTGGCGAGCAGAAGATTTCCCATCA
TCCTGGTAGTCGATGAGCGTCTAGACCACCTCCATTGGGAACAACTAGTC
ACCGTGCAGGAATTCTCCCGCGTCAAATCACTGCATTGCCTATGGCGCTT
GTTCCAGAATCACAAATCAAACATAAAGCATGGCTACTACACAACAAATA
TTAAACGTGGCATGTGTGTAATAAACCCAGATGCGGATTTGGTCAACTCC
GGCCGCAGGCTGCGTAGCTTTTTTGAGTACTGGCTCTCCCAGTGGCAGCA
TCTTTTTGAAACCGTGCCCAATGAGGAGGTGATGGTGAAACAGGCGCTAC
AGGCGGATTGCTTTGTATACGCAGGTCACGGTTCTGGGCTGCAGTACGTC
AATGGTCGCATAATTTGCCGGGCTCGGGTACGCAGCGTTGTTTTTCTATT
CGGCTGCGATTCTACACGCATGTTGGGCACGGGCCTGTACAGCGCATTGT
ATGGAGCCCATGATTATTACCATGGAGCTCTGTGTCCTTCGATAGTTGGT
ACTCTCATGCCCGCCTTGGATGGTAATATGGATACTGTTTCGGTGACAAT
ATTGAGTCGTTGGTTGGCCCCGGGGGATAACAAAGTGATTCCGTGGACAC
ATATTGATCGGGTGCCTTGGCTCAAAAATGGCATTATAAAAGGAAAAGAT
GAAACCACGCCCACCATGAACGATCAACCCAACTACCATCTGGGCAGCCT
GTGCTCTATCCTATCTCTCGTACAGCAAGGAAAAGTGGAGCCGAATATCT
ACAACTGCTGCATTTACGTGTGCCGCGGACTTCCCGCATGGAATTTGGCC
GTGGAAAAGCTGCCTTTATAGAAGCTTTCTAGACCAT

BS05003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 1905 CG10583-PA 1..1905 17..1921 9525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-RA 2177 CG10583-RA 94..1998 17..1921 9525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5661267..5661740 757..284 2370 100 Minus
3L 28110227 3L 5660850..5661209 1117..758 1800 100 Minus
3L 28110227 3L 5660113..5660439 1743..1417 1635 100 Minus
3L 28110227 3L 5660497..5660797 1416..1116 1505 100 Minus
3L 28110227 3L 5661802..5661998 285..89 985 100 Minus
3L 28110227 3L 5659879..5660059 1921..1741 905 100 Minus
3L 28110227 3L 5662082..5662154 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:44:03 has no hits.

BS05003.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:20 Download gff for BS05003.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 1..1905 17..1921 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:17 Download gff for BS05003.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 88..1992 17..1921 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:10 Download gff for BS05003.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 94..1998 17..1921 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:20 Download gff for BS05003.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 81..2000 7..1929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:29 Download gff for BS05003.complete
Subject Subject Range Query Range Percent Splice Strand
Sse-RA 94..1998 17..1921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:29 Download gff for BS05003.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5660850..5661209 758..1117 100 <- Minus
3L 5659879..5660057 1743..1921 100 <- Minus
3L 5660114..5660439 1417..1742 100 <- Minus
3L 5660497..5660795 1118..1416 100 <- Minus
3L 5661267..5661738 286..757 100 <- Minus
3L 5661802..5661997 90..285 100 <- Minus
3L 5662082..5662154 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:10 Download gff for BS05003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5653214..5653539 1417..1742 100 <- Minus
arm_3L 5653597..5653895 1118..1416 100 <- Minus
arm_3L 5653950..5654309 758..1117 100 <- Minus
arm_3L 5652979..5653157 1743..1921 100 <- Minus
arm_3L 5654367..5654838 286..757 100 <- Minus
arm_3L 5654902..5655097 90..285 100 <- Minus
arm_3L 5655182..5655254 17..89 100   Minus

BS05003.pep Sequence

Translation from 16 to 1920

> BS05003.pep
MLETGDEAEMLAGFTSSDVGPEAKEYNLLRADEEYRNGNVEHSIYYQVKA
QFQSTDLRYLTESAELENQRPTAEELIKSATKLEKKDYKSKKFLQNIIKY
LQQMEQEKQPKKPINEIPEYLDFLDDVQDPTEGLTRISEKCNSLPQEWCV
LQLCKSFNPATTYSVFNEIIASDGAIYLTLLRHCRSSQLGPICLKISNEN
TANLFREYSTLVERFRRVVTVDPLNMKGKEAKQKYWEELNGFDTFQQKLL
ADFRDIISPYSFLFFGKRYDCTVVQKQIKATYTRVDDFCLLNQWGTHQRV
LLSQAASHANRLEIADLKLICYELSSNENEIQSAYELLKGLASDWAEVEE
RQPLASRRFPIILVVDERLDHLHWEQLVTVQEFSRVKSLHCLWRLFQNHK
SNIKHGYYTTNIKRGMCVINPDADLVNSGRRLRSFFEYWLSQWQHLFETV
PNEEVMVKQALQADCFVYAGHGSGLQYVNGRIICRARVRSVVFLFGCDST
RMLGTGLYSALYGAHDYYHGALCPSIVGTLMPALDGNMDTVSVTILSRWL
APGDNKVIPWTHIDRVPWLKNGIIKGKDETTPTMNDQPNYHLGSLCSILS
LVQQGKVEPNIYNCCIYVCRGLPAWNLAVEKLPL*

BS05003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Sse-PA 634 CG10583-PA 1..634 1..634 3367 100 Plus