Clone Sequence Records
BS05003.3prime Sequence
964 bp (831 high quality bases) assembled on 2005-12-02
> BS05003.3prime
ATGGTCTAGAAAGCTTCTATAAAGGCAGCTTTTCCACGGCCAAATTCCAT
GCGGGAAGTCCGCGGCACACGTAAATGCAGCAGTTGTAGATATTCGGCTC
CACTTTTCCTTGCTGTACGAGAGATAGGATAGAGCACAGGCTGCCCAGAT
GGTAGTTGGGTTGATCGTTCATGGTGGGCGTGGTTTCATCTTTTCCTTTT
ATAATGCCATTTTTGAGCCAAGGCACCCGATCAATATGTGTCCACGGAAT
CACTTTGTTATCCCCCGGGGCCAACCAACGACTCAATATTGTCACCGAAA
CAGTATCCATATTACCATCCAAGGCGGGCATGAGAGTACCAACTATCGAA
GGACACAGAGCTCCATGGTAATAATCATGGGCTCCATACAATGCGCTGTA
CAGGCCCGTGCCCAACATGCGTGTAGAATCGCAGCCGAATAGAAAAACAA
CGCTGCGTACCCGAGCCCGGCAAATTATGCGACCATTGACGTACTGCAGC
CCAGAACCGTGACCTGCGTATACAAAGCAATCCGCCTGTAGCGCCTGTTT
CACCATCACCTCCTCATTGGGCACGGTTTCAAAAAGATGCTGCCACTGGG
AGAGCCAGTACTCAAAAAAGCTACGCAGCCTGCGGCCGGAGTTGACCAAA
TCCGCATCTGGGTTTATTACACACATGCCACGTTTAATATTTGTTGTGTA
GTAGCCATGCTTTATGTTTGATTTGTGATTCTGGAACAAGCGCCATAGGC
AATGCAGTGATTTGACGCGGGAGAATTCCTGCACGGTGACTAGTTGTTCC
CAATGGAGGTGGTCTAGACGCTCATCGACTACCAGGATGATGGGAAATCT
TCTGCTCGCCAGGGGCTGACGCTCCTCCACTTCCGCCCAGTCGCTGGCCA
ACCCTTTAAGCATTCGTATGCCGACTGGATCTCATTTTTCGTGCTCGACA
GCTCATAGCAGATG
BS05003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10583-PA | 1905 | Sse-RA | 1010..1905 | 912..17 | 4430 | 99.7 | Minus |
CG10583-PA | 1905 | Sse-RA | 983..1009 | 938..912 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-RA | 2177 | CG10583-RA | 1050..1998 | 964..17 | 4645 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5660113..5660439 | 195..521 | 1635 | 100 | Plus |
3L | 28110227 | 3L | 5660497..5660797 | 522..822 | 1505 | 100 | Plus |
3L | 28110227 | 3L | 5659879..5660059 | 17..197 | 905 | 100 | Plus |
3L | 28110227 | 3L | 5660850..5660994 | 821..964 | 600 | 95.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:14:49 has no hits.
BS05003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:10 Download gff for
BS05003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-PA | 957..1905 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:57 Download gff for
BS05003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10583-PA | 957..1905 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:05:25 Download gff for
BS05003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 1050..2006 | 9..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:27 Download gff for
BS05003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 1050..2006 | 9..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:27 Download gff for
BS05003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5659871..5660057 | 9..195 | 97 | <- | Plus |
3L | 5660114..5660439 | 196..521 | 100 | <- | Plus |
3L | 5660497..5660795 | 522..820 | 100 | <- | Plus |
3L | 5660850..5660994 | 821..964 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:05:25 Download gff for
BS05003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5652971..5653157 | 9..195 | 97 | <- | Plus |
arm_3L | 5653214..5653539 | 196..521 | 100 | <- | Plus |
arm_3L | 5653597..5653895 | 522..820 | 100 | <- | Plus |
arm_3L | 5653950..5654094 | 821..964 | 96 | | Plus |
BS05003.5prime Sequence
836 bp (752 high quality bases) assembled on 2005-12-02
> BS05003.5prime
GAAGTTATCAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGG
CCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTA
CTGCGCGCCGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTA
CTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCG
AATCGGCGGAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAA
TCAGCCACTAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCA
GAACATCATCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGA
AGCCAATCAACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAG
GATCCTACAGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCC
CCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCA
CCTACTCCGTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTC
ACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAA
AATTTCCAACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGG
TGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGT
AAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTT
TCAGCAAAAACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCT
TTCTGTTCTTTGGCAAAAGATATGACTGCACTGTTG
BS05003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10583-PA | 1905 | Sse-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-RA | 2177 | CG10583-RA | 94..913 | 17..836 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5661267..5661740 | 757..284 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 5661802..5661998 | 285..89 | 985 | 100 | Minus |
3L | 28110227 | 3L | 5661131..5661209 | 836..758 | 395 | 100 | Minus |
3L | 28110227 | 3L | 5662082..5662154 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 03:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 2503..2540 | 758..721 | 109 | 76.3 | Minus |
BS05003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:11 Download gff for
BS05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:58 Download gff for
BS05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10583-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:59:40 Download gff for
BS05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 87..913 | 7..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:43:31 Download gff for
BS05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 87..913 | 7..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:43:31 Download gff for
BS05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5661131..5661209 | 758..836 | 100 | <- | Minus |
3L | 5661267..5661738 | 286..757 | 100 | <- | Minus |
3L | 5661802..5661997 | 90..285 | 100 | <- | Minus |
3L | 5662082..5662161 | 7..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:59:40 Download gff for
BS05003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5654231..5654309 | 758..836 | 100 | <- | Minus |
arm_3L | 5654367..5654838 | 286..757 | 100 | <- | Minus |
arm_3L | 5654902..5655097 | 90..285 | 100 | <- | Minus |
arm_3L | 5655182..5655261 | 7..89 | 95 | | Minus |
BS05003.complete Sequence
1937 bp assembled on 2008-01-02
GenBank Submission: FJ635029
> BS05003.complete
GAAGTTATCAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGG
CCGGTTTCACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTA
CTGCGCGCCGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTA
CTACCAGGTTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCG
AATCGGCGGAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAA
TCAGCCACTAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCA
GAACATCATCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGA
AGCCAATCAACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAG
GATCCTACAGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCC
CCAAGAATGGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCA
CCTACTCCGTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTC
ACTCTGCTCCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAA
AATTTCCAACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGG
TGGAAAGATTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGT
AAAGAGGCTAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTT
TCAGCAAAAACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCT
TTCTGTTCTTTGGCAAAAGATATGACTGCACTGTTGTTCAAAAACAAATC
AAAGCCACCTATACTCGTGTTGACGATTTCTGTCTGCTTAATCAATGGGG
TACCCACCAACGTGTTTTACTTTCCCAAGCGGCCTCGCATGCCAATCGAC
TGGAAATCGCAGATCTCAAACTCATCTGCTATGAGCTGTCGAGCAACGAA
AATGAGATCCAGTCGGCATACGAATTGCTTAAGGGTTTGGCCAGCGACTG
GGCGGAAGTGGAGGAGCGTCAGCCCCTGGCGAGCAGAAGATTTCCCATCA
TCCTGGTAGTCGATGAGCGTCTAGACCACCTCCATTGGGAACAACTAGTC
ACCGTGCAGGAATTCTCCCGCGTCAAATCACTGCATTGCCTATGGCGCTT
GTTCCAGAATCACAAATCAAACATAAAGCATGGCTACTACACAACAAATA
TTAAACGTGGCATGTGTGTAATAAACCCAGATGCGGATTTGGTCAACTCC
GGCCGCAGGCTGCGTAGCTTTTTTGAGTACTGGCTCTCCCAGTGGCAGCA
TCTTTTTGAAACCGTGCCCAATGAGGAGGTGATGGTGAAACAGGCGCTAC
AGGCGGATTGCTTTGTATACGCAGGTCACGGTTCTGGGCTGCAGTACGTC
AATGGTCGCATAATTTGCCGGGCTCGGGTACGCAGCGTTGTTTTTCTATT
CGGCTGCGATTCTACACGCATGTTGGGCACGGGCCTGTACAGCGCATTGT
ATGGAGCCCATGATTATTACCATGGAGCTCTGTGTCCTTCGATAGTTGGT
ACTCTCATGCCCGCCTTGGATGGTAATATGGATACTGTTTCGGTGACAAT
ATTGAGTCGTTGGTTGGCCCCGGGGGATAACAAAGTGATTCCGTGGACAC
ATATTGATCGGGTGCCTTGGCTCAAAAATGGCATTATAAAAGGAAAAGAT
GAAACCACGCCCACCATGAACGATCAACCCAACTACCATCTGGGCAGCCT
GTGCTCTATCCTATCTCTCGTACAGCAAGGAAAAGTGGAGCCGAATATCT
ACAACTGCTGCATTTACGTGTGCCGCGGACTTCCCGCATGGAATTTGGCC
GTGGAAAAGCTGCCTTTATAGAAGCTTTCTAGACCAT
BS05003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-RA | 1905 | CG10583-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-RA | 2177 | CG10583-RA | 94..1998 | 17..1921 | 9525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5661267..5661740 | 757..284 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 5660850..5661209 | 1117..758 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 5660113..5660439 | 1743..1417 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 5660497..5660797 | 1416..1116 | 1505 | 100 | Minus |
3L | 28110227 | 3L | 5661802..5661998 | 285..89 | 985 | 100 | Minus |
3L | 28110227 | 3L | 5659879..5660059 | 1921..1741 | 905 | 100 | Minus |
3L | 28110227 | 3L | 5662082..5662154 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:44:03 has no hits.
BS05003.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:20 Download gff for
BS05003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 1..1905 | 17..1921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:17 Download gff for
BS05003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 88..1992 | 17..1921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:10 Download gff for
BS05003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 94..1998 | 17..1921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:20 Download gff for
BS05003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 81..2000 | 7..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:29 Download gff for
BS05003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sse-RA | 94..1998 | 17..1921 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:29 Download gff for
BS05003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5660850..5661209 | 758..1117 | 100 | <- | Minus |
3L | 5659879..5660057 | 1743..1921 | 100 | <- | Minus |
3L | 5660114..5660439 | 1417..1742 | 100 | <- | Minus |
3L | 5660497..5660795 | 1118..1416 | 100 | <- | Minus |
3L | 5661267..5661738 | 286..757 | 100 | <- | Minus |
3L | 5661802..5661997 | 90..285 | 100 | <- | Minus |
3L | 5662082..5662154 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:10 Download gff for
BS05003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5653214..5653539 | 1417..1742 | 100 | <- | Minus |
arm_3L | 5653597..5653895 | 1118..1416 | 100 | <- | Minus |
arm_3L | 5653950..5654309 | 758..1117 | 100 | <- | Minus |
arm_3L | 5652979..5653157 | 1743..1921 | 100 | <- | Minus |
arm_3L | 5654367..5654838 | 286..757 | 100 | <- | Minus |
arm_3L | 5654902..5655097 | 90..285 | 100 | <- | Minus |
arm_3L | 5655182..5655254 | 17..89 | 100 | | Minus |
BS05003.pep Sequence
Translation from 16 to 1920
> BS05003.pep
MLETGDEAEMLAGFTSSDVGPEAKEYNLLRADEEYRNGNVEHSIYYQVKA
QFQSTDLRYLTESAELENQRPTAEELIKSATKLEKKDYKSKKFLQNIIKY
LQQMEQEKQPKKPINEIPEYLDFLDDVQDPTEGLTRISEKCNSLPQEWCV
LQLCKSFNPATTYSVFNEIIASDGAIYLTLLRHCRSSQLGPICLKISNEN
TANLFREYSTLVERFRRVVTVDPLNMKGKEAKQKYWEELNGFDTFQQKLL
ADFRDIISPYSFLFFGKRYDCTVVQKQIKATYTRVDDFCLLNQWGTHQRV
LLSQAASHANRLEIADLKLICYELSSNENEIQSAYELLKGLASDWAEVEE
RQPLASRRFPIILVVDERLDHLHWEQLVTVQEFSRVKSLHCLWRLFQNHK
SNIKHGYYTTNIKRGMCVINPDADLVNSGRRLRSFFEYWLSQWQHLFETV
PNEEVMVKQALQADCFVYAGHGSGLQYVNGRIICRARVRSVVFLFGCDST
RMLGTGLYSALYGAHDYYHGALCPSIVGTLMPALDGNMDTVSVTILSRWL
APGDNKVIPWTHIDRVPWLKNGIIKGKDETTPTMNDQPNYHLGSLCSILS
LVQQGKVEPNIYNCCIYVCRGLPAWNLAVEKLPL*
BS05003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sse-PA | 634 | CG10583-PA | 1..634 | 1..634 | 3367 | 100 | Plus |