Clone BS05004 Report

Search the DGRC for BS05004

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG10889-RA
Protein status:BS05004.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05004.3prime Sequence

970 bp (844 high quality bases) assembled on 2005-12-02

> BS05004.3prime
ATGGTCTAGAAAGCTTCTAATTATGCGGAAATAAATTAAGAATAGCCGCG
CATATGGTCTTGGCGTCGGTCTCCTCCGGATAGAGCTGCAGTACGGCATG
CACCTGGTGCGGTGGGAAAAGGCTGCCCAGGTGATAGCGCAGCAATCGGC
GCTGCTCCTCCCGCGGAAGCTGCTGCGAGGCGTGCAGCTCCTCGTTGATG
CGCGAATCGGAGGCAGACAGATGGGCGAAGTTGTGAGCGGGCAGTGGCAG
ACCCAGTCCCTGATCCGTGACCGGGGCGGATGGCGTGCGCGTCAGATACT
GGTGGTGATAGTTGGTGCTGGAGTTGGACTGTTGATGCTGCTGCTGTGCC
TGGTGTTGTTGTTGCTGGAGGGGAGCACTGTAGGTGGGCACCAGCAGGCG
GTAGGCGGGCGGCGGTTGTTGGCGCTGCAGCTTCTTGTGGCGATTGGGCT
GGCTGGATTCCACGGCACCCTCTGAAAGATCCATTTGAGCGGAGAAGCCC
TGACATACCTGCTCGATGGTATTTGACTTGGTGCGCCCCAGCGGCTCCCG
GCTAATCAGTGAGTTGATCTTAACATTGTTATTATTGCCACCCGGACTGA
CCAACTGTTGGCCACCGTTCGTGTGCAGGGGCGCGCTGTGGGAGGCCTGC
AGCGGGAGGCGCTGCAGCAGTGGCGCCTGATTGTGATGCCGGAACTTGCA
CTTCTGGCCGTAGGTGCACTTCTTGCCGTACGGACACAACTGCTGCGCAT
CCGCCATTTTCTGCTGCGTCTGCGAGCACAGGAAGAGGTCCAGATTTGGA
CCCGATCTGCCCAGCGGATCGTCGGGTGGCATGAAGATGTCATTTACAAA
AGAGTACATCAACAGGCGCTCCTGCACCACGCGCCTAAACTCGTTACTCT
CCAGGATCAGATCCCTGTAGTTGTCGTTTGAGACTACAATGCCGTCAGTT
TCACTGCCAGCTTGAGTATG

BS05004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 1623 CG10889-RA 688..1623 952..17 4655 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2176 CG10889-RA 807..1761 970..17 4735 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20034296..20035250 17..970 4710 99.8 Plus
Blast to na_te.dros performed 2015-02-09 02:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1591 369..291 180 73.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6857 432..295 175 63.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2466 451..289 171 60 Minus
roo 9092 roo DM_ROO 9092bp 1073..1163 367..276 169 70.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2406 367..295 166 73 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6933 451..255 166 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2551 455..298 165 61.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2251..2394 435..295 162 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6917 451..295 162 60 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6805 367..293 160 72 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6838 367..293 160 72 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6946 439..309 158 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6794 371..295 152 70.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6819 367..300 152 73.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6817 367..293 151 70.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1606 386..296 148 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2502 455..276 148 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2511 367..289 146 70.9 Minus
roo 9092 roo DM_ROO 9092bp 1115..1152 367..330 145 86.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6851 367..289 144 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2538 455..289 139 57.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6836..6900 367..300 134 70.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2417 367..293 131 67.1 Minus
roo 9092 roo DM_ROO 9092bp 1060..1125 368..300 130 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2613..2689 370..291 123 67.1 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 522..599 373..296 120 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1630 370..296 119 63.6 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6059..6097 371..333 114 76.9 Minus

BS05004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:12 Download gff for BS05004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 669..1623 17..970 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:59 Download gff for BS05004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 669..1623 17..970 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:03:59 Download gff for BS05004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 806..1763 12..970 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:15:41 Download gff for BS05004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 807..1764 12..970 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:15:41 Download gff for BS05004.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20034293..20035250 12..970 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:03:59 Download gff for BS05004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15860015..15860972 12..970 99   Plus

BS05004.5prime Sequence

928 bp (781 high quality bases) assembled on 2005-11-29

> BS05004.5prime
GAAGTTATCAGTCGACATGCGCATCAAGATGGATTGCGAAGTGCAGGAGC
AACACAAACAGCAGCAACAACAACAGCAGGTCCACCAGCAACAACAAAAA
CACGGCAGCAGCAACAAGTTGCCAGTGAGAAAGCAGGAAAGCTGCTCCGA
CGACGATGAGAGCCAGAGTCCCAGCCGCACAACGGAGCGCCAGAACCTGG
AGTTCGCCAAAAAGCTAGGCTACAGCGAACAGTCCATCCATTCGGCGCTG
ACGCGCCTCGGCTCGGAAGCCAAGCAGAACGAGCTGCTGGCGGAGCTGAT
CAAGCTGACGGCCGATGCACCGCGGCCCGCCCACATAGGCGGAGGCGGCA
GTCCATCCAGCATGACCAGCACTCTGTCCTCCCCGACCGGCGGTAGCAAC
AGCTCTGGCTTGAGACACATCGTAATCGATGGCAGTAATGTCGCCCTTTC
TCACGGCAACAATCTAGTATTCTCTTGCCGCGGCATTCGCATCTGTGTGG
ACTGGTTCCGGCAGCGTGGCCATCGCGACATCACCGCTTTCGTGCCCAAC
TGGCGCAAGGAGATGGCGAACAACAACATAGCCGACCAGGAGCTGCTCTA
CGAGCTGGAGCACGAAAGATACCTGGTGTTCACGCCATCGCGACATCTGG
ATGGCAAGCGTGTGTCCTGCTACGATGATCGCTTCATACTCAAGCTGGCA
GTGGAAACTGACGGCATTGTAGTCTCCAACGACAACTACAGGGATCTGAT
CCTGGAGAGTAACGAGTTTAGGCGCGTGGTGCAGGAGCGCCTGTTGATGT
ACTCTTTTGTAAATGACATCTTCATGCCACCCGACGATCCGCTGGGCAGA
TCGGGTCCAAATCTGGACCTCTTCCTGTGCTCGCAGACGCAGCAGAAAAT
GGCGGATGCGCAGCAGTTGTGTCCGTAC

BS05004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 1623 CG10889-RA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2176 CG10889-RA 139..1050 17..928 4560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20035007..20035918 928..17 4560 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:44:29 has no hits.

BS05004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:13 Download gff for BS05004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 1..912 17..928 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:00 Download gff for BS05004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-PA 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:20 Download gff for BS05004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 130..1049 8..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:23 Download gff for BS05004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 131..1050 8..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:23 Download gff for BS05004.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20035007..20035926 8..928 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:20 Download gff for BS05004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15860729..15861648 8..928 99   Minus

BS05004.complete Sequence

1655 bp (1655 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635030

> BS05004.complete
GAAGTTATCAGTCGACATGCGCATCAAGATGGATTGCGAAGTGCAGGAGC
AACACAAACAGCAGCAACAACAACAGCAGGTCCACCAGCAACAACAAAAA
CACGGCAGCAGCAACAAGTTGCCAGTGAGAAAGCAGGAAAGCTGCTCCGA
CGACGATGAGAGCCAGAGTCCCAGCCGCACAACGGAGCGCCAGAACCTGG
AGTTCGCCAAAAAGCTAGGCTACAGCGAACAGTCCATCCATTCGGCGCTG
ACGCGCCTCGGCTCGGAAGCCAAGCAGAACGAGCTGCTGGCGGAGCTGAT
CAAGCTGACGGCCGATGCACCGCGGCCCGCCCACATAGGCGGAGGCGGCA
GTCCATCCAGCATGACCAGCACTCTGTCCTCCCCGACCGGCGGTAGCAAC
AGCTCTGGCTTGAGACACATCGTAATCGATGGCAGTAATGTCGCCCTTTC
TCACGGCAACAATCTAGTATTCTCTTGCCGCGGCATTCGCATCTGTGTGG
ACTGGTTCCGGCAGCGTGGCCATCGCGACATCACCGCTTTCGTGCCCAAC
TGGCGCAAGGAGATGGCGAACAACAACATAGCCGACCAGGAGCTGCTCTA
CGAGCTGGAGCACGAAAGATACCTGGTGTTCACGCCATCGCGACATCTGG
ATGGCAAGCGTGTGTCCTGCTACGATGATCGCTTCATACTCAAGCTGGCA
GTGGAAACTGACGGCATTGTAGTCTCCAACGACAACTACAGGGATCTGAT
CCTGGAGAGTAACGAGTTTAGGCGCGTGGTGCAGGAGCGCCTGTTGATGT
ACTCTTTTGTAAATGACATCTTCATGCCACCCGACGATCCGCTGGGCAGA
TCGGGTCCAAATCTGGACCTCTTCCTGTGCTCGCAGACGCAGCAGAAAAT
GGCGGATGCGCAGCAGTTGTGTCCGTACGGCAAGAAGTGCACCTACGGCC
AGAAGTGCAAGTTCCGGCATCACAATCAGGCGCCACTGCTGCAGCGCCTC
CCGCTGCAGGCCTCCCACAGCGCGCCCCTGCACACGAACGGTGGCCAACA
GTTGGTCAGTCCGGGTGGCAATAATAACAATGTTAAGATCAACTCACTGA
TTAGCCGGGAGCCGCTGGGGCGCACCAAGTCAAATACCATCGAGCAGGTA
TGTCAGGGCTTCTCCGCTCAAATGGATCTTTCAGAGGGTGCCGTGGAATC
CAGCCAGCCCAATCGCCACAAGAAGCTGCAGCGCCAACAACCGCCGCCCG
CCTACCGCCTGCTGGTGCCCACCTACAGTGCTCCCCTCCAGCAACAACAA
CACCAGGCACAGCAGCAGCATCAACAGTCCAACTCCAGCACCAACTATCA
CCACCAGTATCTGACGCGCACGCCATCCGCCCCGGTCACGGATCAGGGAC
TGGGTCTGCCACTGCCCGCTCACAACTTCGCCCATCTGTCTGCCTCCGAT
TCGCGCATCAACGAGGAGCTGCACGCCTCGCAGCAGCTTCCGCGGGAGGA
GCAGCGCCGATTGCTGCGCTATCACCTGGGCAGCCTTTTCCCACCGCACC
AGGTGCATGCCGTACTGCAGCTCTATCCGGAGGAGACCGACGCCAAGACC
ATATGCGCGGCTATTCTTAATTTATTTCCGCATAATTAGAAGCTTTCTAG
ACCAT

BS05004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 1623 CG10889-PA 1..1623 17..1639 8115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-RA 2176 CG10889-RA 139..1761 17..1639 8115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20034296..20035918 1639..17 8115 100 Minus
Blast to na_te.dros performed 2014-11-28 00:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1591 1287..1365 180 73.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6857 1224..1361 175 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2466 1205..1367 171 60 Plus
roo 9092 roo DM_ROO 9092bp 1073..1163 1289..1380 169 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2406 1289..1361 166 73 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6933 1205..1401 166 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2551 1201..1358 165 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2251..2394 1221..1361 162 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6917 1205..1361 162 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6805 1289..1363 160 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6838 1289..1363 160 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6946 1217..1347 158 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6794 1285..1361 152 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6819 1289..1356 152 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6817 1289..1363 151 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1606 1270..1360 148 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2502 1201..1380 148 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2511 1289..1367 146 70.9 Plus
roo 9092 roo DM_ROO 9092bp 1115..1152 1289..1326 145 86.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6851 1289..1367 144 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2538 1201..1367 139 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6836..6900 1289..1356 134 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2613..2689 1286..1365 123 67.1 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 522..599 1283..1360 120 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1630 1286..1360 119 63.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6059..6097 1285..1323 114 76.9 Plus

BS05004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:24 Download gff for BS05004.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 1..1623 17..1639 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:51 Download gff for BS05004.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 130..1763 8..1644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:43 Download gff for BS05004.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 138..1760 17..1639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:24 Download gff for BS05004.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 130..1763 8..1644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:20 Download gff for BS05004.complete
Subject Subject Range Query Range Percent Splice Strand
CG10889-RA 139..1761 17..1639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:20 Download gff for BS05004.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20034296..20035918 17..1639 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:43 Download gff for BS05004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15860018..15861640 17..1639 100   Minus

BS05004.pep Sequence

Translation from 16 to 1638

> BS05004.pep
MRIKMDCEVQEQHKQQQQQQQVHQQQQKHGSSNKLPVRKQESCSDDDESQ
SPSRTTERQNLEFAKKLGYSEQSIHSALTRLGSEAKQNELLAELIKLTAD
APRPAHIGGGGSPSSMTSTLSSPTGGSNSSGLRHIVIDGSNVALSHGNNL
VFSCRGIRICVDWFRQRGHRDITAFVPNWRKEMANNNIADQELLYELEHE
RYLVFTPSRHLDGKRVSCYDDRFILKLAVETDGIVVSNDNYRDLILESNE
FRRVVQERLLMYSFVNDIFMPPDDPLGRSGPNLDLFLCSQTQQKMADAQQ
LCPYGKKCTYGQKCKFRHHNQAPLLQRLPLQASHSAPLHTNGGQQLVSPG
GNNNNVKINSLISREPLGRTKSNTIEQVCQGFSAQMDLSEGAVESSQPNR
HKKLQRQQPPPAYRLLVPTYSAPLQQQQHQAQQQHQQSNSSTNYHHQYLT
RTPSAPVTDQGLGLPLPAHNFAHLSASDSRINEELHASQQLPREEQRRLL
RYHLGSLFPPHQVHAVLQLYPEETDAKTICAAILNLFPHN*

BS05004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10889-PA 540 CG10889-PA 1..540 1..540 2846 100 Plus
CG42360-PA 496 CG42360-PA 343..494 133..287 371 49.7 Plus