Clone Sequence Records
BS05005.3prime Sequence
938 bp (808 high quality bases) assembled on 2005-12-02
> BS05005.3prime
ATGGTCTAGAAAGCTTCTAGCACATATTCTGCAGCACATTCAGTATGTAG
GCTCCAATGTCCTCGTCCTGGTTGGTCCACGATATCAAAATGTTCTTCTG
CTTGGGATCCTTCTCGTCCTCCTCCACCTTCACCTCAACGGATTCGATGG
CTATGGAGCCGTTCTCCTGCATCGTCACCGTCCAGCCGGCTAGCTTTTCT
TCGAGCAGAGTCTTCAGTCTTTCGCTTGTGCGAATGACCGGTCCGGAGTC
GTCCATTTTGACCTTGGATGTAAATCGCATAACATGTCGATTAATTCCGA
TTTCCTTCAGGGCATCGGTTAGGTTTTGCAGCATTATTCGATTGTCCTTC
ATTACGAGGACGCCATGGATTAGTCGCCGCCTCTTGGGATCCGGTGGCTG
GGCGTTGTAGGACCGGGCCTCTGCTTTAAGCAGGGAAACGGACGCATCTA
CTGGTATCTTCACAGGCGTAGAAATCACACAGGTTTCGCCGTTGGCCGGC
ATGTAGGTTTCCAGGTTGAATTCGTCTTTGATCTTCGAGCGCAGGAACTT
CATCTTCCCTGCTTCACCATGGACGAGCATGACGTTCTTTGGCTCACAGT
TCTGAATTAGCTGCATAATGCCTTTGGCATCTGCATGGGCCGAGAAGCTC
ATGTACTCCACGGCCATTTTGACCTCGACCACCTGGCGGTTCTCGAACTC
CACCTTCTTGGCGCCACCGAGAATCTTGTTGCCCACGGTTCCCTGCACAC
AGTAGCCGGGCATAATCACCATGTTGTTCTCATTCGGCGCCCACTTCTTG
AAGATCTGCAGGGAAAGACCTGCGTGCAGCATGCCTGGCGTGGCGAACAC
TACCATCGCGCCAGGATTGTCGATGTANGCCTTGTCAAAGGGCTTGATGT
GCTTGAAGTCGAACATGTTGCGGTGAACGAAGGTCTTG
BS05005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1972-PA | 1794 | CG1972-RA | 873..1794 | 938..17 | 4591 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 2043 | CG1972-RA | 1006..1927 | 938..17 | 4599 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29746791..29747397 | 623..17 | 3035 | 100 | Minus |
| 3R | 32079331 | 3R | 29746421..29746738 | 938..621 | 1579 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:20:16 has no hits.
BS05005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:14 Download gff for
BS05005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-PA | 873..1794 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:01 Download gff for
BS05005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-PA | 873..1794 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:24:36 Download gff for
BS05005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 1006..1929 | 13..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:07 Download gff for
BS05005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 1006..1929 | 13..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:07 Download gff for
BS05005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29746421..29746737 | 622..938 | 99 | -> | Minus |
| 3R | 29746793..29747399 | 13..621 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:24:36 Download gff for
BS05005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25572143..25572459 | 622..938 | 99 | -> | Minus |
| arm_3R | 25572515..25573121 | 13..621 | 99 | | Minus |
BS05005.5prime Sequence
888 bp (833 high quality bases) assembled on 2005-12-02
> BS05005.5prime
GAAGTTATCAGTCGACATGCCGGACATCAAGATAACGCCCTTGGGCGCCG
GCCAGGATGTGGGCCGCAGCTGTCTGCTGCTCTCGATGGGCGGGAAGAAC
ATAATGCTCGACTGCGGGATGCATATGGGCTACAACGACGAGCGCCGCTT
CCCGGACTTCTCCTACATAGTGCCGGAGGGTCCGATCACCAGCCACATTG
ACTGTGTGATCATCTCGCACTTCCACCTGGATCACTGCGGGGCCTTGCCC
TACATGTCAGAGATTGTGGGCTACACGGGGCCCATCTACATGACGCATCC
GACCAAGGCCATAGCACCCATCCTCCTGGAGGACATGCGGAAGGTGGCCG
TAGAGCGGAAAGGCGAGTCGAACTTCTTTACCACCCAGATGATCAAGGAC
TGCATGAAGAAGGTGATTCCCGTCACACTTCACCAGAGTATGATGGTGGA
CACGGACCTTGAGATCAAAGCCTACTATGCAGGCCATGTCCTGGGCGCCG
CCATGTTCTGGATCAAGGTGGGCTCCCAGAGCGTTGTCTACACGGGGGAC
TACAACATGACTCCAGACAGGCATCTGGGAGCCGCCTGGATAGACAAGTG
CCGGCCGGACTTGCTGATCTCCGAGAGCACCTACGCCACTACCATTAGGG
ACTCGAAGCGGTGTCGCGAGAGGGACTTCCTCAAGAAAGTTCACGAGTGC
GTGGCTAAGGGCGGCAAGGTTTTAATCCCTGTTTTTGCCCTGGGTCGCGC
CCAGGAGCTGTGCATCCTGCTGGAGACGTACTGGGAGCGCATGAACCTCA
AGTACCCCATATACTTTGCTCTGGGTCTTACCGAGAAGGCCAATACCTAC
TACAAAATGTTCATCACCTGGACGAACCAGAAGATCCG
BS05005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1972-PA | 1794 | CG1972-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 2043 | CG1972-RA | 134..1005 | 17..888 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29745762..29746420 | 230..888 | 3295 | 100 | Plus |
| 3R | 32079331 | 3R | 29745470..29745683 | 17..230 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:13:10 has no hits.
BS05005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:15 Download gff for
BS05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:03 Download gff for
BS05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:31 Download gff for
BS05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 129..1005 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:04 Download gff for
BS05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 129..1005 | 9..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:04 Download gff for
BS05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29745465..29745683 | 9..230 | 98 | -> | Plus |
| 3R | 29745763..29746420 | 231..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:31 Download gff for
BS05005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25571187..25571405 | 9..230 | 98 | -> | Plus |
| arm_3R | 25571485..25572142 | 231..888 | 100 | | Plus |
BS05005.complete Sequence
1826 bp assembled on 2008-01-02
GenBank Submission: FJ635031
> BS05005.complete
GAAGTTATCAGTCGACATGCCGGACATCAAGATAACGCCCTTGGGCGCCG
GCCAGGATGTGGGCCGCAGCTGTCTGCTGCTCTCGATGGGCGGGAAGAAC
ATAATGCTCGACTGCGGGATGCATATGGGCTACAACGACGAGCGCCGCTT
CCCGGACTTCTCCTACATAGTGCCGGAGGGTCCGATCACCAGCCACATTG
ACTGTGTGATCATCTCGCACTTCCACCTGGATCACTGCGGGGCCTTGCCC
TACATGTCAGAGATTGTGGGCTACACGGGGCCCATCTACATGACGCATCC
GACCAAGGCCATAGCACCCATCCTCCTGGAGGACATGCGGAAGGTGGCCG
TAGAGCGGAAAGGCGAGTCGAACTTCTTTACCACCCAGATGATCAAGGAC
TGCATGAAGAAGGTGATTCCCGTCACACTTCACCAGAGTATGATGGTGGA
CACGGACCTTGAGATCAAAGCCTACTATGCAGGCCATGTCCTGGGCGCCG
CCATGTTCTGGATCAAGGTGGGCTCCCAGAGCGTTGTCTACACGGGGGAC
TACAACATGACTCCAGACAGGCATCTGGGAGCCGCCTGGATAGACAAGTG
CCGGCCGGACTTGCTGATCTCCGAGAGCACCTACGCCACTACCATTAGGG
ACTCGAAGCGGTGTCGCGAGAGGGACTTCCTCAAGAAAGTTCACGAGTGC
GTGGCTAAGGGCGGCAAGGTTTTAATCCCTGTTTTTGCCCTGGGTCGCGC
CCAGGAGCTGTGCATCCTGCTGGAGACGTACTGGGAGCGCATGAACCTCA
AGTACCCCATATACTTTGCTCTGGGTCTTACCGAGAAGGCCAATACCTAC
TACAAAATGTTCATCACCTGGACGAACCAGAAGATCCGCAAGACCTTCGT
TCACCGCAACATGTTCGACTTCAAGCACATCAAGCCCTTTGACAAGGCCT
ACATCGACAATCCTGGCGCGATGGTAGTGTTCGCCACGCCAGGCATGCTG
CACGCAGGTCTTTCCCTGCAGATCTTCAAGAAGTGGGCGCCGAATGAGAA
CAACATGGTGATTATGCCCGGCTACTGTGTGCAGGGAACCGTGGGCAACA
AGATTCTCGGTGGCGCCAAGAAGGTGGAGTTCGAGAACCGCCAGGTGGTC
GAGGTCAAAATGGCCGTGGAGTACATGAGCTTCTCGGCCCATGCAGATGC
CAAAGGCATTATGCAGCTAATTCAGAACTGTGAGCCAAAGAACGTCATGC
TCGTCCATGGTGAAGCAGGGAAGATGAAGTTCCTGCGCTCGAAGATCAAA
GACGAATTCAACCTGGAAACCTACATGCCGGCCAACGGCGAAACCTGTGT
GATTTCTACGCCTGTGAAGATACCAGTAGATGCGTCCGTTTCCCTGCTTA
AAGCAGAGGCCCGGTCCTACAACGCCCAGCCACCGGATCCCAAGAGGCGG
CGACTAATCCATGGCGTCCTCGTAATGAAGGACAATCGAATAATGCTGCA
AAACCTAACCGATGCCCTGAAGGAAATCGGAATTAATCGACATGTTATGC
GATTTACATCCAAGGTCAAAATGGACGACTCCGGACCGGTCATTCGCACA
AGCGAAAGACTGAAGACTCTGCTCGAAGAAAAGCTAGCCGGCTGGACGGT
GACGATGCAGGAGAACGGCTCCATAGCCATCGAATCCGTTGAGGTGAAGG
TGGAGGAGGACGAGAAGGATCCCAAGCAGAAGAACATTTTGATATCGTGG
ACCAACCAGGACGAGGACATTGGAGCCTACATACTGAATGTGCTGCAGAA
TATGTGCTAGAAGCTTTCTAGACCAT
BS05005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 1794 | CG1972-PA | 1..1794 | 17..1810 | 8970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-RA | 2043 | CG1972-RA | 134..1927 | 17..1810 | 8970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29745762..29746738 | 230..1206 | 4885 | 100 | Plus |
| 3R | 32079331 | 3R | 29746791..29747397 | 1204..1810 | 3035 | 100 | Plus |
| 3R | 32079331 | 3R | 29745470..29745683 | 17..230 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:42:53 has no hits.
BS05005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:21 Download gff for
BS05005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-RA | 1..1794 | 17..1810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:57 Download gff for
BS05005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-RA | 117..1910 | 17..1810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:03 Download gff for
BS05005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 134..1927 | 17..1810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:22 Download gff for
BS05005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1972-RA | 112..1912 | 9..1814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:51 Download gff for
BS05005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS11-RA | 134..1927 | 17..1810 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:51 Download gff for
BS05005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29745470..29745683 | 17..230 | 100 | -> | Plus |
| 3R | 29745763..29746737 | 231..1205 | 100 | -> | Plus |
| 3R | 29746793..29747397 | 1206..1810 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:03 Download gff for
BS05005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25571192..25571405 | 17..230 | 100 | -> | Plus |
| arm_3R | 25571485..25572459 | 231..1205 | 100 | -> | Plus |
| arm_3R | 25572515..25573119 | 1206..1810 | 100 | | Plus |
BS05005.pep Sequence
Translation from 16 to 1809
> BS05005.pep
MPDIKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSY
IVPEGPITSHIDCVIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIA
PILLEDMRKVAVERKGESNFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEI
KAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLL
ISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRAQELCI
LLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMF
DFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM
PGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQ
LIQNCEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGETCVISTPV
KIPVDASVSLLKAEARSYNAQPPDPKRRRLIHGVLVMKDNRIMLQNLTDA
LKEIGINRHVMRFTSKVKMDDSGPVIRTSERLKTLLEEKLAGWTVTMQEN
GSIAIESVEVKVEEDEKDPKQKNILISWTNQDEDIGAYILNVLQNMC*
BS05005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS11-PA | 597 | CG1972-PA | 1..597 | 1..597 | 3148 | 100 | Plus |
| Cpsf73-PA | 684 | CG7698-PA | 10..456 | 1..440 | 817 | 39 | Plus |
| Cpsf100-PA | 756 | CG1957-PA | 5..392 | 4..383 | 359 | 26.5 | Plus |
