Clone BS05007 Report

Search the DGRC for BS05007

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptmTerf5-RA
Protein status:BS05007.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05007.3prime Sequence

917 bp (814 high quality bases) assembled on 2005-12-02

> BS05007.3prime
ATGGTCTAGAAAGCTTCTACAAGCGCTCCATAATCATTTTCTCTGCAGGC
TTTACGCCGTACTTGTAGACCTTATTGAGACTTTCCGGAAAGTCGGGCAG
TAGATTGTTGAAGTTCTCCACGTGATGTGTATGCTGCTCCGTCCAGATGC
CGTCGCCCGTGAAGTGGAACTCCGATTCGATTAGGTAGAGAATGAGAGTC
AGAATTTCGTTGTTGCTTAACGAATCGAAATTCGCCACTGGCAACTGCAG
ATCTTCTTGCGCATCGGGTGATTGCAAAAGGAGCATTTTTTCTTCAATAC
GTTTGATGGGATAAAGCAGCAAGTGTATGTTCGCAAATATCTCATTAAGT
TTAAACTTTTTGCTGCGTAAGTACTCCAGACACTGCTTCACGTGCAGCAA
TGGTATATGGCACCAGTTGGGATGGCGAGAGAGAAGATTGCGCAGCACTT
GCACGTCCTTCCCCAAAACATTACTCAAGTAGACGACTATATCGCGGCCT
TTAGTACGATCTGAGCCATCTCTGGCAAATTTAGCGAACGCCTCGGACCC
ACAAGAAAGGATGTGCAAGGAGGCGCACCGAACCCGCAGTTGATTGAGAT
AATCCAGACGCAGTCGCGCCTTGTTCTGGTAGTGGACCAGTCTCAGGATT
CGCGGATTGGTACCCAAGACTTGAAACTCCTCGATCTCCTGCAGATCCCT
TAGTCGCTCCAGAACCGTATCCGGTCCAAGGGTGAGCACTTCCAGGCAGC
GGAGAACGGCATCCTCACTGATGCCGAAAGCGTGGACGTGCTGCAGTGTT
TGCTTCAAGCTATCGCAGGTGGACATCAAAATCTTGGGTCTGCGAAAGCC
GATTTCTCGTATGTCCTGCGAGTCAATGGTAGGCACCTCTCGCAGGATGC
GCCGCACGTTATCTGCT

BS05007.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7175-PA 1683 CG7175-RA 783..1683 917..17 4505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-RA 1999 CG7175-RA 1035..1935 917..17 4505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18222210..18222596 531..917 1935 100 Plus
2R 25286936 2R 3524935..3525408 449..917 1915 94.1 Plus
2R 25286936 2R 3524594..3524938 17..363 1535 96.8 Plus
3R 32079331 3R 18221586..18221874 17..305 1445 100 Plus
3R 32079331 3R 18221934..18222158 306..530 1125 100 Plus
Blast to na_te.dros performed on 2015-01-30 15:38:18 has no hits.

BS05007.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:19 Download gff for BS05007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7175-PA 783..1683 17..917 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:07 Download gff for BS05007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7175-PA 783..1683 17..917 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:15:52 Download gff for BS05007.3prime
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 1035..1939 13..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:09 Download gff for BS05007.3prime
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 1035..1939 13..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:09 Download gff for BS05007.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18221582..18221874 13..305 99 <- Plus
3R 18221934..18222158 306..530 100 <- Plus
3R 18222210..18222596 531..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:15:52 Download gff for BS05007.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14047304..14047596 13..305 99 <- Plus
arm_3R 14047656..14047880 306..530 100 <- Plus
arm_3R 14047932..14048318 531..917 100   Plus

BS05007.5prime Sequence

907 bp (845 high quality bases) assembled on 2005-11-29

> BS05007.5prime
GAAGTTATCAGTCGACATGCTGCGCAACGGCCAGAATCAAGCGCAATTGC
TGGCCCGGAGCCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGG
GTCAGCAGTAAGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGAC
AGTCGAGATTCCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAA
CTCTGGGTAGTTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCA
GAGCTCAAGACGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTT
GAAATCACTGGACTATAGTGTGGACGACATCATAGCGAAACCCATGATCA
TCTATTATGGCGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAG
TGCGGCTTCCACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGT
GGTCAACAAGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCG
ATGTGAAGGTGGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTG
CCGGTGGATTTACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTT
GAGACAATCCCTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACG
ACAACGATCTACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAG
AGTTTTCGAGCAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAA
TTTTTCCGCCGAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCGGAAG
CAGATAACGTGCGGCGCATCCTGCGAGAGGTGCCTACCATTGACTCGCAN
GACATACGAGAAATCGGCTTTCGCAGACCCAAGATTTTGATGTCCACCTG
CGATAGC

BS05007.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7175-PA 1683 CG7175-RA 1..891 17..907 4436 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-RA 1999 CG7175-RA 253..1143 17..907 4444 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18222488..18223189 907..206 3499 99.9 Minus
2R 25286936 2R 3525316..3526041 891..140 2929 93.2 Minus
3R 32079331 3R 18223238..18223430 209..17 965 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:47:01 has no hits.

BS05007.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:20 Download gff for BS05007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7175-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:08 Download gff for BS05007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7175-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:30 Download gff for BS05007.5prime
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 253..1143 17..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:23:03 Download gff for BS05007.5prime
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 253..1143 17..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:23:03 Download gff for BS05007.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18222488..18223188 207..907 99 <- Minus
3R 18223241..18223430 17..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:30 Download gff for BS05007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14048210..14048910 207..907 99 <- Minus
arm_3R 14048963..14049152 17..206 100   Minus

BS05007.complete Sequence

1715 bp (1715 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635032

> BS05007.complete
GAAGTTATCAGTCGACATGCTGCGCAACGGCCAGAATCAAGCGCAATTGC
TGGCCCGGAGCCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGG
GTCAGCAGTAAGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGAC
AGTCGAGATTCCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAA
CTCTGGGTAGTTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCA
GAGCTCAAGACGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTT
GAAATCACTGGACTATAGTGTGGACGACATCATAGCGAAACCCATGATCA
TCTATTATGGCGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAG
TGCGGCTTCCACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGT
GGTCAACAAGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCG
ATGTGAAGGTGGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTG
CCGGTGGATTTACGGGAGCTGGAGAGTGAGACCCTCACACTGAAGAGCTT
GAGACAATCCCTGATCAACGCTTACCTGCGTGAACGTCTCCAGATGGACG
ACAACGATCTACAGAAGCTGTGGCGCGTTTACACGCGCATCCGCCACAAG
AGTTTTCGAGCAGTGCAGGACACCATTGAACTGCTGACCAAAGAGTTTAA
TTTTTCCGCCGAGCGGCTAAGGAAGAACAGTTTTCTGCTCTATTCGGAAG
CAGATAACGTGCGGCGCATCCTGCGAGAGGTGCCTACCATTGACTCGCAG
GACATACGAGAAATCGGCTTTCGCAGACCCAAGATTTTGATGTCCACCTG
CGATAGCTTGAAGCAAACACTGCAGCACGTCCACGCTTTCGGCATCAGTG
AGGATGCCGTTCTCCGCTGCCTGGAAGTGCTCACCCTTGGACCGGATACG
GTTCTGGAGCGACTAAGGGATCTGCAGGAGATCGAGGAGTTTCAAGTCTT
GGGTACCAATCCGCGAATCCTGAGACTGGTCCACTACCAGAACAAGGCGC
GACTGCGTCTGGATTATCTCAATCAACTGCGGGTTCGGTGCGCCTCCTTG
CACATCCTTTCTTGTGGGTCCGAGGCGTTCGCTAAATTTGCCAGAGATGG
CTCAGATCGTACTAAAGGCCGCGATATAGTCGTCTACTTGAGTAATGTTT
TGGGGAAGGACGTGCAAGTGCTGCGCAATCTTCTCTCTCGCCATCCCAAC
TGGTGCCATATACCATTGCTGCACGTGAAGCAGTGTCTGGAGTACTTACG
CAGCAAAAAGTTTAAACTTAATGAGATATTTGCGAACATACACTTGCTGC
TTTATCCCATCAAACGTATTGAAGAAAAAATGCTCCTTTTGCAATCACCC
GATGCGCAAGAAGATCTGCAGTTGCCAGTGGCGAATTTCGATTCGTTAAG
CAACAACGAAATTCTGACTCTCATTCTCTACCTAATCGAATCGGAGTTCC
ACTTCACGGGCGACGGCATCTGGACGGAGCAGCATACACATCACGTGGAG
AACTTCAACAATCTACTGCCCGACTTTCCGGAAAGTCTCAATAAGGTCTA
CAAGTACGGCGTAAAGCCTGCAGAGAAAATGATTATGGAGCGCTTGTAGA
AGCTTTCTAGACCAT

BS05007.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-RA 1683 CG7175-PA 1..1683 17..1699 8415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-RA 1999 CG7175-RA 253..1935 17..1699 8415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18222210..18223189 1185..206 4900 100 Minus
2R 25286936 2R 3524935..3526041 1267..140 4450 93.5 Minus
2R 25286936 2R 3524594..3524938 1699..1353 1535 96.8 Minus
3R 32079331 3R 18221586..18221874 1699..1411 1445 100 Minus
3R 32079331 3R 18221934..18222158 1410..1186 1125 100 Minus
3R 32079331 3R 18223238..18223430 209..17 965 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:03:31 has no hits.

BS05007.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:26 Download gff for BS05007.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 1..1683 17..1699 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:52 Download gff for BS05007.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 252..1938 17..1703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:43 Download gff for BS05007.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 253..1935 17..1699 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:26 Download gff for BS05007.complete
Subject Subject Range Query Range Percent Splice Strand
CG7175-RA 252..1938 17..1703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:55 Download gff for BS05007.complete
Subject Subject Range Query Range Percent Splice Strand
mTerf5-RA 253..1935 17..1699 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:55 Download gff for BS05007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18221586..18221874 1411..1699 100 <- Minus
3R 18221934..18222158 1186..1410 100 <- Minus
3R 18223241..18223430 17..206 100   Minus
3R 18222210..18223188 207..1185 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:43 Download gff for BS05007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14048963..14049152 17..206 100   Minus
arm_3R 14047308..14047596 1411..1699 100 <- Minus
arm_3R 14047656..14047880 1186..1410 100 <- Minus
arm_3R 14047932..14048910 207..1185 100 <- Minus

BS05007.pep Sequence

Translation from 16 to 1698

> BS05007.pep
MLRNGQNQAQLLARSLGQLARGMASSKRVSSKKEDLKPKLPKPPTVEIPM
EEPLNASYLSKTLGSSYRSWAAALEKHPELKTLKRKDLLSSYDTLKSLDY
SVDDIIAKPMIIYYGATTLANRHSVLQECGFHNVTVQTLAKYVTVVNKPI
EVLKAHNYIPFDVKVAERLAGYFKDIKLPVDLRELESETLTLKSLRQSLI
NAYLRERLQMDDNDLQKLWRVYTRIRHKSFRAVQDTIELLTKEFNFSAER
LRKNSFLLYSEADNVRRILREVPTIDSQDIREIGFRRPKILMSTCDSLKQ
TLQHVHAFGISEDAVLRCLEVLTLGPDTVLERLRDLQEIEEFQVLGTNPR
ILRLVHYQNKARLRLDYLNQLRVRCASLHILSCGSEAFAKFARDGSDRTK
GRDIVVYLSNVLGKDVQVLRNLLSRHPNWCHIPLLHVKQCLEYLRSKKFK
LNEIFANIHLLLYPIKRIEEKMLLLQSPDAQEDLQLPVANFDSLSNNEIL
TLILYLIESEFHFTGDGIWTEQHTHHVENFNNLLPDFPESLNKVYKYGVK
PAEKMIMERL*

BS05007.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
mTerf5-PA 560 CG7175-PA 1..560 1..560 2865 100 Plus