Clone BS05008 Report

Search the DGRC for BS05008

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:8
Vector:pDNR-Dual
Associated Gene/TranscripteIF-2gamma-RB
Protein status:BS05008.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05008.3prime Sequence

921 bp (813 high quality bases) assembled on 2005-12-02

> BS05008.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTGCCACCTGGCTGTCCAGAACGGGT
GTGATTGTCTTGCCTCCGAAGATCTGACCCCAGCCAATCAAACGCCAATG
GTTCTCCACACGTCTGCTGAGTGCAATCTTCTCGCCCTTCTCCGTGCACA
CAGGCGTCGTAAGAACGATCTTGGCCAAATCACCTTTGGTGGCCGAGATG
CGGCCACCAGTGCTGAGGGATCCGATATTAACCAACAGGATTTCGTTCTT
CTGCAGCTTCTCAACGCGCGCTCCCTTCTTGTCACCATCGGTACGGACGC
CGAGAAGGCGACGCAGCAGGTAATACGAGATTTCCAGCTCCTGGTAGATG
TCCGGCAGCTGGCCAACGGCGCCTAGCACCTGACCGACCAAACGATCGGC
ACGGCACAGCGTAGGATCGATCTTGGTGCCCACACCAATCAGACCGCCGG
GCACGGCGTACTGCAGCTCATTCTGTTCGGCGAAGAGCGAGACGATACGG
GAGAAGATTGGACGGCAGGTGATGTTGCCATCGCTATCCTTGGTCACAAC
GCCCGGACGCACCTCGATCTCTTGGCCTACCTTCAGCACGCCGCTCAGAA
TGGAGCCACCGGCCACACCGCCCTTAAGGTCTGCCACCTCACAGCCTGGC
TTGTTCACGTCGAAGGATCGGATGACGATCAGACGGGGCGGGGCATTGAA
GTCACGCGGCGGCACTGGTATCTTGTTCACAATGTACTCGCAGAGCACAT
CGATGTTGTACTTAAGCTGGGCCGAGATCGGAATGATCGGAGCGCCCTCA
GCTACGGTGCCCTGGACGAATTTGGTGATCTCCTCGTACTGCTCTTTCGC
CTGGCTCTCCTTGATCAGATCGATCTTGTTTTGCAAGATCAGAATCTGTT
TCAGCTTCATAATCTCAATGG

BS05008.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6476-PB 1428 Su(var)3-9-RB 524..1428 921..17 4525 100 Minus
CG6476-PC 1404 Su(var)3-9-RC 500..1404 921..17 4525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 2062 CG43665-RD 635..1541 921..15 4535 100 Minus
eIF-2gamma-RC 1886 CG43665-RC 599..1505 921..15 4535 100 Minus
eIF-2gamma-RB 1922 CG43665-RB 635..1541 921..15 4535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259338 93..921 4145 100 Plus
3R 32079331 3R 15258365..15258443 15..93 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:21:26 has no hits.

BS05008.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:22 Download gff for BS05008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PB 524..1428 17..921 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:09 Download gff for BS05008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PC 500..1404 17..921 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:24:48 Download gff for BS05008.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 635..1546 6..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:52 Download gff for BS05008.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 635..1546 6..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:52 Download gff for BS05008.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15258360..15258442 6..92 95 <- Plus
3R 15258510..15259338 93..921 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:24:48 Download gff for BS05008.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084082..11084164 6..92 95 <- Plus
arm_3R 11084232..11085060 93..921 100   Plus

BS05008.5prime Sequence

878 bp (805 high quality bases) assembled on 2005-11-29

> BS05008.5prime
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTG
CCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCT
TGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACAT
GTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTT
GAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATG
AATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATT
ATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAA
GGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGG
GCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAG
TACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCC
GCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCG
ACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCC
GGTGGCTCCATTCTGAGCGGCGTGCTGA

BS05008.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6476-PB 1428 Su(var)3-9-RB 1..862 17..878 4310 100 Plus
CG6476-PC 1404 Su(var)3-9-RC 42..838 82..878 3985 100 Plus
CG6476-PA 1908 Su(var)3-9-RA 1..241 17..257 1205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 2062 CG43665-RD 110..973 15..878 4320 100 Plus
eIF-2gamma-RB 1922 CG43665-RB 110..973 15..878 4320 100 Plus
eIF-2gamma-RC 1886 CG43665-RC 141..937 82..878 3985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15259000..15259388 878..490 1930 99.7 Minus
3R 32079331 3R 15259449..15259687 495..257 1195 100 Minus
3R 32079331 3R 15262545..15262722 259..82 890 100 Minus
3R 32079331 3R 15263281..15263349 83..15 345 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:30:52 has no hits.

BS05008.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:23 Download gff for BS05008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PB 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:11 Download gff for BS05008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PB 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:59 Download gff for BS05008.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 97..972 1..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:53 Download gff for BS05008.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 97..972 1..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:53 Download gff for BS05008.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15259001..15259383 495..877 100 <- Minus
3R 15259450..15259686 258..494 100 <- Minus
3R 15262547..15262721 83..257 100 <- Minus
3R 15263282..15263362 1..82 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:59 Download gff for BS05008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084723..11085105 495..877 100 <- Minus
arm_3R 11085172..11085408 258..494 100 <- Minus
arm_3R 11088269..11088443 83..257 100 <- Minus
arm_3R 11089004..11089084 1..82 93   Minus

BS05008.complete Sequence

1460 bp (1460 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635033

> BS05008.complete
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTG
CCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCT
TGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACAT
GTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTT
GAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATG
AATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATT
ATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAA
GGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGG
GCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAG
TACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCC
GCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCG
ACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCC
GGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGAGATCGAGGT
GCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCAACATCACCTGCCGTC
CAATCTTCTCCCGTATCGTCTCGCTCTTCGCCGAACAGAATGAGCTGCAG
TACGCCGTGCCCGGCGGTCTGATTGGTGTGGGCACCAAGATCGATCCTAC
GCTGTGCCGTGCCGATCGTTTGGTCGGTCAGGTGCTAGGCGCCGTTGGCC
AGCTGCCGGACATCTACCAGGAGCTGGAAATCTCGTATTACCTGCTGCGT
CGCCTTCTCGGCGTCCGTACCGATGGTGACAAGAAGGGAGCGCGCGTTGA
GAAGCTGCAGAAGAACGAAATCCTGTTGGTTAATATCGGATCCCTCAGCA
CTGGTGGCCGCATCTCGGCCACCAAAGGTGATTTGGCCAAGATCGTTCTT
ACGACGCCTGTGTGCACGGAGAAGGGCGAGAAGATTGCACTCAGCAGACG
TGTGGAGAACCATTGGCGTTTGATTGGCTGGGGTCAGATCTTCGGAGGCA
AGACAATCACACCCGTTCTGGACAGCCAGGTGGCAAAGAAGTAGAAGCTT
TCTAGACCAT

BS05008.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 1428 CG43665-PD 1..1428 17..1444 7140 100 Plus
eIF-2gamma-RB 1428 CG43665-PB 1..1428 17..1444 7140 100 Plus
eIF-2gamma-RC 1404 CG43665-PC 42..1404 82..1444 6815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 2062 CG43665-RD 110..1541 15..1446 7160 100 Plus
eIF-2gamma-RB 1922 CG43665-RB 110..1541 15..1446 7160 100 Plus
eIF-2gamma-RC 1886 CG43665-RC 141..1505 82..1446 6825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259388 1368..490 4380 99.9 Minus
3R 32079331 3R 15259449..15259687 495..257 1195 100 Minus
3R 32079331 3R 15262545..15262722 259..82 890 100 Minus
3R 32079331 3R 15258365..15258443 1446..1368 395 100 Minus
3R 32079331 3R 15263281..15263349 83..15 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:40:36 has no hits.

BS05008.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:27 Download gff for BS05008.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 1..1428 17..1444 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:54 Download gff for BS05008.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 113..1562 1..1455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:50 Download gff for BS05008.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 112..1539 17..1444 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:27 Download gff for BS05008.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RB 113..1562 1..1455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:32 Download gff for BS05008.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 112..1539 17..1444 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:32 Download gff for BS05008.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15258367..15258442 1369..1444 100 <- Minus
3R 15258510..15259383 495..1368 100 <- Minus
3R 15259450..15259686 258..494 100 <- Minus
3R 15262547..15262721 83..257 100 <- Minus
3R 15263282..15263347 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:50 Download gff for BS05008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084089..11084164 1369..1444 100 <- Minus
arm_3R 11084232..11085105 495..1368 100 <- Minus
arm_3R 11085172..11085408 258..494 100 <- Minus
arm_3R 11088269..11088443 83..257 100 <- Minus
arm_3R 11089004..11089069 17..82 100   Minus

BS05008.pep Sequence

Translation from 16 to 1443

> BS05008.pep
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPAS
FVSDASSKDDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAV
MDAALLLIAGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAK
EQYEEITKFVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFN
APPRLIVIRSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVV
TKDSDGNITCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRAD
RLVGQVLGAVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKN
EILLVNIGSLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHW
RLIGWGQIFGGKTITPVLDSQVAKK*

BS05008.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-PD 475 CG43665-PD 1..475 1..475 2416 100 Plus
eIF-2gamma-PB 475 CG43665-PB 1..475 1..475 2416 100 Plus
eIF-2gamma-PC 467 CG43665-PC 15..467 23..475 2310 100 Plus
Su(var)3-9-PA 635 CG43664-PA 1..89 1..89 390 92.1 Plus
EfSec-PA 511 CG9841-PA 6..230 42..295 201 27.8 Plus