Clone Sequence Records
BS05008.3prime Sequence
921 bp (813 high quality bases) assembled on 2005-12-02
> BS05008.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTGCCACCTGGCTGTCCAGAACGGGT
GTGATTGTCTTGCCTCCGAAGATCTGACCCCAGCCAATCAAACGCCAATG
GTTCTCCACACGTCTGCTGAGTGCAATCTTCTCGCCCTTCTCCGTGCACA
CAGGCGTCGTAAGAACGATCTTGGCCAAATCACCTTTGGTGGCCGAGATG
CGGCCACCAGTGCTGAGGGATCCGATATTAACCAACAGGATTTCGTTCTT
CTGCAGCTTCTCAACGCGCGCTCCCTTCTTGTCACCATCGGTACGGACGC
CGAGAAGGCGACGCAGCAGGTAATACGAGATTTCCAGCTCCTGGTAGATG
TCCGGCAGCTGGCCAACGGCGCCTAGCACCTGACCGACCAAACGATCGGC
ACGGCACAGCGTAGGATCGATCTTGGTGCCCACACCAATCAGACCGCCGG
GCACGGCGTACTGCAGCTCATTCTGTTCGGCGAAGAGCGAGACGATACGG
GAGAAGATTGGACGGCAGGTGATGTTGCCATCGCTATCCTTGGTCACAAC
GCCCGGACGCACCTCGATCTCTTGGCCTACCTTCAGCACGCCGCTCAGAA
TGGAGCCACCGGCCACACCGCCCTTAAGGTCTGCCACCTCACAGCCTGGC
TTGTTCACGTCGAAGGATCGGATGACGATCAGACGGGGCGGGGCATTGAA
GTCACGCGGCGGCACTGGTATCTTGTTCACAATGTACTCGCAGAGCACAT
CGATGTTGTACTTAAGCTGGGCCGAGATCGGAATGATCGGAGCGCCCTCA
GCTACGGTGCCCTGGACGAATTTGGTGATCTCCTCGTACTGCTCTTTCGC
CTGGCTCTCCTTGATCAGATCGATCTTGTTTTGCAAGATCAGAATCTGTT
TCAGCTTCATAATCTCAATGG
BS05008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6476-PB | 1428 | Su(var)3-9-RB | 524..1428 | 921..17 | 4525 | 100 | Minus |
CG6476-PC | 1404 | Su(var)3-9-RC | 500..1404 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 2062 | CG43665-RD | 635..1541 | 921..15 | 4535 | 100 | Minus |
eIF-2gamma-RC | 1886 | CG43665-RC | 599..1505 | 921..15 | 4535 | 100 | Minus |
eIF-2gamma-RB | 1922 | CG43665-RB | 635..1541 | 921..15 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258510..15259338 | 93..921 | 4145 | 100 | Plus |
3R | 32079331 | 3R | 15258365..15258443 | 15..93 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:21:26 has no hits.
BS05008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:22 Download gff for
BS05008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PB | 524..1428 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:09 Download gff for
BS05008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PC | 500..1404 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:24:48 Download gff for
BS05008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 635..1546 | 6..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:52 Download gff for
BS05008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 635..1546 | 6..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:52 Download gff for
BS05008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15258360..15258442 | 6..92 | 95 | <- | Plus |
3R | 15258510..15259338 | 93..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:24:48 Download gff for
BS05008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084082..11084164 | 6..92 | 95 | <- | Plus |
arm_3R | 11084232..11085060 | 93..921 | 100 | | Plus |
BS05008.5prime Sequence
878 bp (805 high quality bases) assembled on 2005-11-29
> BS05008.5prime
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTG
CCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCT
TGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACAT
GTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTT
GAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATG
AATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATT
ATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAA
GGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGG
GCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAG
TACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCC
GCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCG
ACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCC
GGTGGCTCCATTCTGAGCGGCGTGCTGA
BS05008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6476-PB | 1428 | Su(var)3-9-RB | 1..862 | 17..878 | 4310 | 100 | Plus |
CG6476-PC | 1404 | Su(var)3-9-RC | 42..838 | 82..878 | 3985 | 100 | Plus |
CG6476-PA | 1908 | Su(var)3-9-RA | 1..241 | 17..257 | 1205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 2062 | CG43665-RD | 110..973 | 15..878 | 4320 | 100 | Plus |
eIF-2gamma-RB | 1922 | CG43665-RB | 110..973 | 15..878 | 4320 | 100 | Plus |
eIF-2gamma-RC | 1886 | CG43665-RC | 141..937 | 82..878 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15259000..15259388 | 878..490 | 1930 | 99.7 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 495..257 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 259..82 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15263281..15263349 | 83..15 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:30:52 has no hits.
BS05008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:23 Download gff for
BS05008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PB | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:11 Download gff for
BS05008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PB | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:59 Download gff for
BS05008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 97..972 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:53 Download gff for
BS05008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 97..972 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:53 Download gff for
BS05008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15259001..15259383 | 495..877 | 100 | <- | Minus |
3R | 15259450..15259686 | 258..494 | 100 | <- | Minus |
3R | 15262547..15262721 | 83..257 | 100 | <- | Minus |
3R | 15263282..15263362 | 1..82 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:59 Download gff for
BS05008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084723..11085105 | 495..877 | 100 | <- | Minus |
arm_3R | 11085172..11085408 | 258..494 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 83..257 | 100 | <- | Minus |
arm_3R | 11089004..11089084 | 1..82 | 93 | | Minus |
BS05008.complete Sequence
1460 bp (1460 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635033
> BS05008.complete
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTG
CCCGCGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCT
TGCCCTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACAT
GTGAGCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTT
GAACGGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATG
AATCCTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATT
ATGAAGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAA
GGAGAGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGG
GCACCGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAG
TACAACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCC
GCCGCGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCG
ACGTGAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCC
GGTGGCTCCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGAGATCGAGGT
GCGTCCGGGCGTTGTGACCAAGGATAGCGATGGCAACATCACCTGCCGTC
CAATCTTCTCCCGTATCGTCTCGCTCTTCGCCGAACAGAATGAGCTGCAG
TACGCCGTGCCCGGCGGTCTGATTGGTGTGGGCACCAAGATCGATCCTAC
GCTGTGCCGTGCCGATCGTTTGGTCGGTCAGGTGCTAGGCGCCGTTGGCC
AGCTGCCGGACATCTACCAGGAGCTGGAAATCTCGTATTACCTGCTGCGT
CGCCTTCTCGGCGTCCGTACCGATGGTGACAAGAAGGGAGCGCGCGTTGA
GAAGCTGCAGAAGAACGAAATCCTGTTGGTTAATATCGGATCCCTCAGCA
CTGGTGGCCGCATCTCGGCCACCAAAGGTGATTTGGCCAAGATCGTTCTT
ACGACGCCTGTGTGCACGGAGAAGGGCGAGAAGATTGCACTCAGCAGACG
TGTGGAGAACCATTGGCGTTTGATTGGCTGGGGTCAGATCTTCGGAGGCA
AGACAATCACACCCGTTCTGGACAGCCAGGTGGCAAAGAAGTAGAAGCTT
TCTAGACCAT
BS05008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 1428 | CG43665-PD | 1..1428 | 17..1444 | 7140 | 100 | Plus |
eIF-2gamma-RB | 1428 | CG43665-PB | 1..1428 | 17..1444 | 7140 | 100 | Plus |
eIF-2gamma-RC | 1404 | CG43665-PC | 42..1404 | 82..1444 | 6815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 2062 | CG43665-RD | 110..1541 | 15..1446 | 7160 | 100 | Plus |
eIF-2gamma-RB | 1922 | CG43665-RB | 110..1541 | 15..1446 | 7160 | 100 | Plus |
eIF-2gamma-RC | 1886 | CG43665-RC | 141..1505 | 82..1446 | 6825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258510..15259388 | 1368..490 | 4380 | 99.9 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 495..257 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 259..82 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15258365..15258443 | 1446..1368 | 395 | 100 | Minus |
3R | 32079331 | 3R | 15263281..15263349 | 83..15 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:40:36 has no hits.
BS05008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:27 Download gff for
BS05008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RB | 1..1428 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:54 Download gff for
BS05008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RB | 113..1562 | 1..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:50 Download gff for
BS05008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 112..1539 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:27 Download gff for
BS05008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RB | 113..1562 | 1..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:32 Download gff for
BS05008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 112..1539 | 17..1444 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:32 Download gff for
BS05008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15258367..15258442 | 1369..1444 | 100 | <- | Minus |
3R | 15258510..15259383 | 495..1368 | 100 | <- | Minus |
3R | 15259450..15259686 | 258..494 | 100 | <- | Minus |
3R | 15262547..15262721 | 83..257 | 100 | <- | Minus |
3R | 15263282..15263347 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:50 Download gff for
BS05008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084089..11084164 | 1369..1444 | 100 | <- | Minus |
arm_3R | 11084232..11085105 | 495..1368 | 100 | <- | Minus |
arm_3R | 11085172..11085408 | 258..494 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 83..257 | 100 | <- | Minus |
arm_3R | 11089004..11089069 | 17..82 | 100 | | Minus |
BS05008.pep Sequence
Translation from 16 to 1443
> BS05008.pep
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPAS
FVSDASSKDDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAV
MDAALLLIAGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAK
EQYEEITKFVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFN
APPRLIVIRSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVV
TKDSDGNITCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRAD
RLVGQVLGAVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKN
EILLVNIGSLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHW
RLIGWGQIFGGKTITPVLDSQVAKK*
BS05008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-PD | 475 | CG43665-PD | 1..475 | 1..475 | 2416 | 100 | Plus |
eIF-2gamma-PB | 475 | CG43665-PB | 1..475 | 1..475 | 2416 | 100 | Plus |
eIF-2gamma-PC | 467 | CG43665-PC | 15..467 | 23..475 | 2310 | 100 | Plus |
Su(var)3-9-PA | 635 | CG43664-PA | 1..89 | 1..89 | 390 | 92.1 | Plus |
EfSec-PA | 511 | CG9841-PA | 6..230 | 42..295 | 201 | 27.8 | Plus |