Clone Sequence Records
BS05010.3prime Sequence
889 bp (840 high quality bases) assembled on 2005-12-02
> BS05010.3prime
ATGGTCTAGAAAGCTTTTACATAATTGAGCAGATGGATCGGCCCTCGGCA
GCGACCGCGGCAACATCAGCCACCTCTACAACAGGGTCAATGTTTTCTCC
ATCGCTGGACTCCTTGTCGCCATCCTGGCCATTGACGTTCTTATCCTCGA
CATCCTTCTTGGCGGGGATTTCCTCCGCTCCGGCCTCCTGACCAACGGTC
ACGTCTTCGGCCGGTTGTTCCTCCTCCACATCAACCTCTTCTGGTACGCC
AGTCGTAGATGTGTTCAGATGTTGCTCCTCCACGCCGGAACTGTTCGGCT
CCAGACGCAGACGGGTCGGAGTACCGATTGTTGCCTTGGAGAATCTCGAG
CGCAGCAAGCTAAAGGGAGAAGCCAAATTCAGGCTGAACAAGTCGAAGCG
GGCGCGCTTTGGCGGCGACATATCCACGTCGTGGCCCAGGTCACTGGTCG
ACTGAGAGGCCGTCAGTGGTGGGGGAGTGCGTTCACGCTTGCGGCCACGG
CCAAAGAATGAAAATGAAAATGACGAGCTGTTGGGGATCTCTGATCCGAC
TGTGGCATTCATGCTTGCGTTCGTGCAGTTCGAGGTGTCCAGATCGCTGT
TCCCGCACCTGTAGGTGCCTATTTTCGAGGGCGTCAGTGAGTCGATGGGT
CGTATGCTACGCCTGCCGCTGATCTGGGCGAAAGTGCGAGCCGGAGTTCC
TGCCGGCGAGCTGGAAGTCTGGGCAGCCAGCTCTACCTCGGTGCTTTGCT
TGTTGCTACCACGGAAACTGAAGAGACTGCGTCCGGGCGTGGATGTAGCC
GTCGGCACGGCATTCAAATTGCCGTGGACGCTGCGTATGGGAGAGGCATC
CACTTGTAGCGGTTCCATATCGACATCTTCTTGTGGAGT
BS05010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5175-PA | 1713 | kuk-RA | 841..1713 | 889..17 | 4365 | 100 | Minus |
| CG5175-PB | 1713 | kuk-RB | 841..1713 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-RC | 2200 | CG5175-RC | 956..1828 | 889..17 | 4365 | 100 | Minus |
| kuk-RB | 2238 | CG5175-RB | 994..1866 | 889..17 | 4365 | 100 | Minus |
| kuk-RA | 2231 | CG5175-RA | 987..1859 | 889..17 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17083537..17084409 | 889..17 | 4365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:11:26 has no hits.
BS05010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:27 Download gff for
BS05010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-PB | 841..1713 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:15 Download gff for
BS05010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5175-PB | 841..1713 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:15 Download gff for
BS05010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 987..1859 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:42 Download gff for
BS05010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 987..1859 | 17..889 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:42 Download gff for
BS05010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17083537..17084409 | 17..889 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:15 Download gff for
BS05010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12909259..12910131 | 17..889 | 100 | | Minus |
BS05010.5prime Sequence
915 bp (808 high quality bases) assembled on 2005-12-02
> BS05010.5prime
GAAGTTATCAGTCGACATGTTAAGCAAAATGGCTAGCAACACAAGCGGCG
GGGGAGGTACCACTTCAGGCACTGGAACGGGACGTCGTCTGCCACTCTCG
CTGAGCGGCGGTTCCACCGTCACGCGCTTGCAGCAATCTTCTGGCAGCAA
CGGCCGCTCAAATAGCCCCCAAAATGGGAACAAAAAGATCACAGAGTCAT
TTTTGCCGGTAAAAAAGAGCAACCAACCGCGGACCACTTCGACTGGATCC
ACCGGATCCAGCCAGAACGGCGTAAGCAAGCCCACAAATGGCAAAGATAA
GTCACAGAATGGCAGCTCAACAGGCAAAGACCAGAAGGTAGAGAAATCTA
AAGATAAGTTGCCGGAAAAGAAGGCAAAGGAAGTGGGTGCCGAGAATAAG
GATAAGGATGGCGCTGCCGAGATGACAGATATGGAGGTTGTGGTCGAAAA
TAAGCAAAAGGAGGTGGTATCCGAAAATAAGCAAAATGAGGTGGTATCTG
AAAATAAGGAAGTGGTATCTGAAAATAAGGAGGTGGTATCCGAAAATAAG
GAGGTGGCTTCCGAAAAAAAGGTGGTGGTAGCTGAAGTTCCCTCCGACAA
AGACGACAACGGAGAGACCAAAAAAGATGATGCTACCGTTGAGAGTACTG
CTCCTGCTTCTCAAACGCCTGCGGATGCTGCGGTAATCATCGATGAAGTA
GTGTTTATTCCCGATCTCAGCACTCCTACTAAGGATCGCAAGTCTACACG
CAAGTCGGGTAGCCAGCAAAAGTCACCCATCAGCAAGGCAAGCAACGCTT
CGCCTGTCCAGAAGATAAAAACCGAAGCAGTTTCTTCATCGACATCGGGC
TCTTTGACTCCACAAGAAGATGTCGATATGGAACCGCTACCAGTGGATGC
CCTCTCCATACGCAG
BS05010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5175-PA | 1713 | kuk-RA | 1..885 | 17..901 | 4400 | 99.8 | Plus |
| CG5175-PB | 1713 | kuk-RB | 1..885 | 17..901 | 4400 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-RC | 2200 | CG5175-RC | 116..1014 | 17..915 | 4435 | 99.7 | Plus |
| kuk-RB | 2238 | CG5175-RB | 154..1052 | 17..915 | 4435 | 99.7 | Plus |
| kuk-RA | 2231 | CG5175-RA | 147..1045 | 17..915 | 4435 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17082697..17083595 | 17..915 | 4420 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:10:02 has no hits.
BS05010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:28 Download gff for
BS05010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-PB | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:16 Download gff for
BS05010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5175-PB | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:09:10 Download gff for
BS05010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 141..1045 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:54 Download gff for
BS05010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 141..1045 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:54 Download gff for
BS05010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17082691..17083595 | 9..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:09:10 Download gff for
BS05010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12908413..12909317 | 9..915 | 99 | | Plus |
BS05010.complete Sequence
1745 bp assembled on 2007-10-17
GenBank Submission: FJ635034
> BS05010.complete
GAAGTTATCAGTCGACATGTTAAGCAAAATGGCTAGCAACACAAGCGGCG
GGGGAGGTACCACTTCAGGCACTGGAACGGGACGTCGTCTGCCACTCTCG
CTGAGCGGCGGTTCCACCGTCACGCGCTTGCAGCAATCTTCTGGCAGCAA
CGGCCGCTCAAATAGCCCCCAAAATGGGAACAAAAAGATCACAGAGTCAT
TTTTGCCGGTAAAAAAGAGCAACCAACCGCGGACCACTTCGACTGGATCC
ACCGGATCCAGCCAGAACGGCGTAAGCAAGCCCACAAATGGCAAAGATAA
GTCACAGAATGGCAGCTCAACAGGCAAAGACCAGAAGGTAGAGAAATCTA
AAGATAAGTTGCCGGAAAAGAAGGCAAAGGAAGTGGGTGCCGAGAATAAG
GATAAGGATGGCGCTGCCGAGATGACAGATATGGAGGTTGTGGTCGAAAA
TAAGCAAAAGGAGGTGGTATCCGAAAATAAGCAAAATGAGGTGGTATCTG
AAAATAAGGAAGTGGTATCTGAAAATAAGGAGGTGGTATCCGAAAATAAG
GAGGTGGCTTCCGAAAAAAAGGTGGTGGTAGCTGAAGTTCCCTCCGACAA
AGACGACAACGGAGAGACCAAAAAAGATGATGCTACCGTTGAGAGTACTG
CTCCTGCTTCTCAAACGCCTGCGGATGCTGCGGTAATCATCGATGAAGTA
GTGTTTATTCCCGATCTCAGCACTCCTACTAAGGATCGCAAGTCTACACG
CAAGTCGGGTAGCCAGCAAAAGTCACCCATCAGCAAGGCAAGCAACGCTT
CGCCTGTCCAGAAGATAAAAACCGAAGCAGTTTCTTCATCGACATCGGGC
TCTTTGACTCCACAAGAAGATGTCGATATGGAACCGCTACAAGTGGATGC
CTCTCCCATACGCAGCGTCCACGGCAATTTGAATGCCGTGCCGACGGCTA
CATCCACGCCCGGACGCAGTCTCTTCAGTTTCCGTGGTAGCAACAAGCAA
AGCACCGAGGTAGAGCTGGCTGCCCAGACTTCCAGCTCGCCGGCAGGAAC
TCCGGCTCGCACTTTCGCCCAGATCAGCGGCAGGCGTAGCATACGACCCA
TCGACTCACTGACGCCCTCGAAAATAGGCACCTACAGGTGCGGGAACAGC
GATCTGGACACCTCGAACTGCACGAACGCAAGCATGAATGCCACAGTCGG
ATCAGAGATCCCCAACAGCTCGTCATTTTCATTTTCATTCTTTGGCCGTG
GCCGCAAGCGTGAACGCACTCCCCCACCACTGACGGCCTCTCAGTCGACC
AGTGACCTGGGCCACGACGTGGATATGTCGCCGCCAAAGCGCGCCCGCTT
CGACTTGTTCAGCCTGAATTTGGCTTCTCCCTTTAGCTTGCTGCGCTCGA
GATTCTCCAAGGCAACAATCGGTACTCCGACCCGTCTGCGTCTGGAGCCG
AACAGTTCCGGCGTGGAGGAGCAACATCTGAACACATCTACGACTGGCGT
ACCAGAAGAGGTTGATGTGGAGGAGGAACAACCGGCCGAAGACGTGACCG
TTGGTCAGGAGGCCGGAGCGGAGGAAATCCCCGCCAAGAAGGATGTCGAG
GATAAGAACGTCAATGGCCAGGATGGCGACAAGGAGTCCAGCGATGGAGA
AAACATTGACCCTGTTGTAGAGGTGGCTGATGTTGCCGCGGTCGCTGCCG
AGGGCCGATCCATCTGCTCAATTATGTAAAAGCTTTCTAGACCAT
BS05010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-RC | 1713 | CG5175-PC | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| kuk-RB | 1713 | CG5175-PB | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| kuk-RA | 1713 | CG5175-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-RC | 2200 | CG5175-RC | 116..1828 | 17..1729 | 8565 | 100 | Plus |
| kuk-RB | 2238 | CG5175-RB | 154..1866 | 17..1729 | 8565 | 100 | Plus |
| kuk-RA | 2231 | CG5175-RA | 147..1859 | 17..1729 | 8565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17082697..17084409 | 17..1729 | 8565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:28:22 has no hits.
BS05010.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:23 Download gff for
BS05010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RB | 1..1713 | 17..1729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:24 Download gff for
BS05010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RB | 146..1864 | 9..1729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:03 Download gff for
BS05010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 152..1857 | 22..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:24 Download gff for
BS05010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RB | 157..1862 | 22..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:24 Download gff for
BS05010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 152..1857 | 22..1727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:24 Download gff for
BS05010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17082702..17084407 | 22..1727 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:03 Download gff for
BS05010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12908424..12910129 | 22..1727 | 100 | | Plus |
BS05010.pep Sequence
Translation from 16 to 1728
> BS05010.pep
MLSKMASNTSGGGGTTSGTGTGRRLPLSLSGGSTVTRLQQSSGSNGRSNS
PQNGNKKITESFLPVKKSNQPRTTSTGSTGSSQNGVSKPTNGKDKSQNGS
STGKDQKVEKSKDKLPEKKAKEVGAENKDKDGAAEMTDMEVVVENKQKEV
VSENKQNEVVSENKEVVSENKEVVSENKEVASEKKVVVAEVPSDKDDNGE
TKKDDATVESTAPASQTPADAAVIIDEVVFIPDLSTPTKDRKSTRKSGSQ
QKSPISKASNASPVQKIKTEAVSSSTSGSLTPQEDVDMEPLQVDASPIRS
VHGNLNAVPTATSTPGRSLFSFRGSNKQSTEVELAAQTSSSPAGTPARTF
AQISGRRSIRPIDSLTPSKIGTYRCGNSDLDTSNCTNASMNATVGSEIPN
SSSFSFSFFGRGRKRERTPPPLTASQSTSDLGHDVDMSPPKRARFDLFSL
NLASPFSLLRSRFSKATIGTPTRLRLEPNSSGVEEQHLNTSTTGVPEEVD
VEEEQPAEDVTVGQEAGAEEIPAKKDVEDKNVNGQDGDKESSDGENIDPV
VEVADVAAVAAEGRSICSIM*
BS05010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-PC | 570 | CG5175-PC | 1..570 | 1..570 | 2854 | 100 | Plus |
| kuk-PB | 570 | CG5175-PB | 1..570 | 1..570 | 2854 | 100 | Plus |
| kuk-PA | 570 | CG5175-PA | 1..570 | 1..570 | 2854 | 100 | Plus |
| Muc68Ca-PA | 3135 | CG18331-PA | 773..1341 | 6..565 | 171 | 20.4 | Plus |
| Muc68Ca-PA | 3135 | CG18331-PA | 693..1261 | 6..565 | 165 | 20.4 | Plus |
