Clone BS05011 Report

Search the DGRC for BS05011

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG4089-RA
Protein status:BS05011.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05011.3prime Sequence

951 bp (872 high quality bases) assembled on 2005-12-02

> BS05011.3prime
ATGGTCTAGAAAGCTTCTAATTGCACCAGACAGCATCAAATTGGCATTTG
TTGTGGAACCAGCGGGTCATCCATGCGTTTTTCTTTGACATGTTTGCAGT
TTCCGCCATAACATCGAATCTCATTGGATCGCGAATGGGCTTAGGGAAAA
TGCGCTTCATGTCCACGCGATGCAGATGCTCCTGATGAGCCTGTTGCAGC
ATCTTGTACTCCGAGCCACTGAGGCATTGCAGGCAAAGATCGCACTCCTC
CTTGTTGCAGGACTTGTCGCAATCGTGTGCAGCGCATTTATTCAAGTCGG
TGGACAGGTTTTTATCGGTTGTGATCATCTCGCTGCTTTCGCCGAGCAAT
GCGCCACTTGTTGATGTAAGTGGCCTTATGCCAACCAAATTAAACACGCT
GTATAGAACTTGCTCGTACAACAGCGAGTTGGGCTTGAAATGGGCAGAAG
AAAGATTGGGAGACATGTTGGCCTCCATGAGAAAAACTTTCAGATCCTCG
TCAATAAACAAATCGAATCGCATCAGATCGAAAAAGTTGTGAGTCCTGTA
GGATCGCAGTATGTTAACGATGTCCTTCTCCTTGGCCGCAATCGTGGTGC
GTACTATGTGCTCCACTTGAGGCCAAATCTGGGCGGGATCCTTGCCCTGA
TCTCGGACATAGGCTTCAAAAACGGTGCGCATGCTGCCGCCAAAGCGATT
GTAGTACTTGCGCAGCGAAGGAACCTCCCAGGTGGGTAAATAGTCATCCC
CCACAATGTACTTGTCCACATTCTCGGCATCGAAGGGATGGTATTTCACC
GGGCAATACCGGAACAGAACGTCGCCCGTGTAGATGTAGACTCGCAAAGG
ATTAACCGAGGTAATGACTACATAGACGCCGATGTCGAACTTGTGGCCAT
CCACCAGATAGGGTCGCTGCACGAATTCCTGGACAAAGGAATCGTTCCAT
C

BS05011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-PA 1551 CG4089-RA 621..1551 947..17 4630 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 2022 CG4089-RA 710..1645 951..16 4650 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10816064..10816668 951..347 2995 99.7 Minus
3R 32079331 3R 10816724..10816937 347..134 1070 100 Minus
3R 32079331 3R 10816996..10817113 133..16 590 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:13:53 has no hits.

BS05011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:29 Download gff for BS05011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-PA 617..1551 17..951 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:18 Download gff for BS05011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-PA 617..1551 17..951 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:42:33 Download gff for BS05011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 710..1645 16..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:27 Download gff for BS05011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 710..1645 16..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:27 Download gff for BS05011.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10816064..10816667 348..951 99 -> Minus
3R 10816724..10816937 134..347 100 -> Minus
3R 10816996..10817113 16..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:42:33 Download gff for BS05011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6642718..6642835 16..133 100   Minus
arm_3R 6641786..6642389 348..951 99 -> Minus
arm_3R 6642446..6642659 134..347 100 -> Minus

BS05011.5prime Sequence

866 bp (794 high quality bases) assembled on 2005-12-02

> BS05011.5prime
GAAGTTATCAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATC
AAAAGGAGGTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCA
TCGAACAGCATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGT
GGCCACGGCCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCC
CCTGGAAGTTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACA
TATGCGATCTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGT
CAATGTGCTGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCT
GGAATCTCTTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTC
AAGAATCTCGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTA
CCTAACTAACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGC
GTGCCTTTCGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGG
GAGAATCCCCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACAT
TAAGGTGCGCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTG
TCCAGGAATTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGAC
ATCGGCGTCTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACAT
CTACACGGGCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCT
TCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGGATGACTATTTACC
CACCTTGGGAGGTTCC

BS05011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-PA 1551 CG4089-RA 1..820 17..836 4100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 2022 CG4089-RA 94..941 17..866 4200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10815502..10816295 71..866 3880 99.7 Plus
3R 32079331 3R 10815381..10815434 17..70 270 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:58:12 has no hits.

BS05011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:30 Download gff for BS05011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-PA 1..848 17..866 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:19 Download gff for BS05011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-PA 1..848 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:25:04 Download gff for BS05011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 89..941 11..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:56:28 Download gff for BS05011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 89..941 11..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:56:28 Download gff for BS05011.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10815502..10816295 71..866 99   Plus
3R 10815376..10815434 11..70 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:25:04 Download gff for BS05011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6641098..6641156 11..70 96 -> Plus
arm_3R 6641224..6642017 71..866 99   Plus

BS05011.complete Sequence

1583 bp (1583 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635035

> BS05011.complete
GAAGTTATCAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATC
AAAAGGAGGTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCA
TCGAACAGCATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGT
GGCCACGGCCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCC
CCTGGAAGTTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACA
TATGCGATCTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGT
CAATGTGCTGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCT
GGAATCTCTTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTC
AAGAATCTCGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTA
CCTAACTAACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGC
GTGCCTTTCGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGG
GAGAATCCCCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACAT
TAAGGTGCGCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTG
TCCAGGAATTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGAC
ATCGGCGTCTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACAT
CTACACGGGCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCT
TCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGATGACTATTTACCC
ACCTGGGAGGTTCCTTCGCTGCGCAAGTACTACAATCGCTTTGGCGGCAG
CATGCGCACCGTTTTTGAAGCCTATGTCCGAGATCAGGGCAAGGATCCCG
CCCAGATTTGGCCTCAAGTGGAGCACATAGTACGCACCACGATTGCGGCC
AAGGAGAAGGACATCGTTAACATACTGCGATCCTACAGGACTCACAACTT
TTTCGATCTGATGCGATTCGATTTGTTTATTGACGAGGATCTGAAAGTTT
TTCTCATGGAGGCCAACATGTCTCCCAATCTTTCTTCTGCCCATTTCAAG
CCCAACTCGCTGTTGTACGAGCAAGTTCTATACAGCGTGTTTAATTTGGT
TGGCATAAGGCCACTTACATCAACAAGTGGCGCATTGCTCGGCGAAAGCA
GCGAGATGATCACAACCGATAAAAACCTGTCCACCGACTTGAATAAATGC
GCTGCACACGATTGCGACAAGTCCTGCAACAAGGAGGAGTGCGATCTTTG
CCTGCAATGCCTCAGTGGCTCGGAGTACAAGATGCTGCAACAGGCTCATC
AGGAGCATCTGCATCGCGTGGACATGAAGCGCATTTTCCCTAAGCCCATT
CGCGATCCAATGAGATTCGATGTTATGGCGGAAACTGCAAACATGTCAAA
GAAAAACGCATGGATGACCCGCTGGTTCCACAACAAATGCCAATTTGATG
CTGTCTGGTGCAATTAGAAGCTTTCTAGACCAT

BS05011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 1551 CG4089-PA 1..1551 17..1567 7755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-RA 2022 CG4089-RA 94..1645 17..1568 7760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10815502..10816668 71..1237 5835 100 Plus
3R 32079331 3R 10816724..10816937 1237..1450 1070 100 Plus
3R 32079331 3R 10816996..10817113 1451..1568 590 100 Plus
3R 32079331 3R 10815381..10815434 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:42:04 has no hits.

BS05011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:28 Download gff for BS05011.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 1..1551 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:55 Download gff for BS05011.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 86..1642 11..1568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:56 Download gff for BS05011.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 94..1644 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:28 Download gff for BS05011.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 86..1642 11..1568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:18 Download gff for BS05011.complete
Subject Subject Range Query Range Percent Splice Strand
CG4089-RA 94..1644 17..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:18 Download gff for BS05011.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10816724..10816937 1237..1450 100 -> Plus
3R 10816996..10817112 1451..1567 100   Plus
3R 10815381..10815434 17..70 100 -> Plus
3R 10815502..10816667 71..1236 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:56 Download gff for BS05011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6641103..6641156 17..70 100 -> Plus
arm_3R 6641224..6642389 71..1236 100 -> Plus
arm_3R 6642446..6642659 1237..1450 100 -> Plus
arm_3R 6642718..6642834 1451..1567 100   Plus

BS05011.pep Sequence

Translation from 16 to 1566

> BS05011.pep
MDASVVENAPNQKEVDGKMATTEESEKPSNSIGLLPIMIFLAATVATAVV
VEVLPHASRVFPWKLADSSADQLQPPPTYAIFGRSPTEEHLVHVVNVLHK
FGYKRVGVNDSWNLLWAHDYPFLSFANLKNLGQHQVVNHYPGCGYLTNKV
DLCTTQLPFLPRAFRLPAEREEFLDYARENPQALFVQKHNEHRHIKVRAP
ADIAFGSNDSFVQEFVQRPYLVDGHKFDIGVYVVITSVNPLRVYIYTGDV
LFRYCPVKYHPFDAENVDKYIVGDDYLPTWEVPSLRKYYNRFGGSMRTVF
EAYVRDQGKDPAQIWPQVEHIVRTTIAAKEKDIVNILRSYRTHNFFDLMR
FDLFIDEDLKVFLMEANMSPNLSSAHFKPNSLLYEQVLYSVFNLVGIRPL
TSTSGALLGESSEMITTDKNLSTDLNKCAAHDCDKSCNKEECDLCLQCLS
GSEYKMLQQAHQEHLHRVDMKRIFPKPIRDPMRFDVMAETANMSKKNAWM
TRWFHNKCQFDAVWCN*

BS05011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4089-PA 516 CG4089-PA 1..516 1..516 2770 100 Plus
CG5987-PA 720 CG5987-PA 166..452 102..371 265 27.1 Plus
CG16716-PC 867 CG16716-PC 143..440 94..374 256 25.2 Plus
CG16833-PM 827 CG16833-PM 339..634 97..374 230 26.1 Plus
CG16833-PK 827 CG16833-PK 339..634 97..374 230 26.1 Plus