Clone Sequence Records
BS05011.3prime Sequence
951 bp (872 high quality bases) assembled on 2005-12-02
> BS05011.3prime
ATGGTCTAGAAAGCTTCTAATTGCACCAGACAGCATCAAATTGGCATTTG
TTGTGGAACCAGCGGGTCATCCATGCGTTTTTCTTTGACATGTTTGCAGT
TTCCGCCATAACATCGAATCTCATTGGATCGCGAATGGGCTTAGGGAAAA
TGCGCTTCATGTCCACGCGATGCAGATGCTCCTGATGAGCCTGTTGCAGC
ATCTTGTACTCCGAGCCACTGAGGCATTGCAGGCAAAGATCGCACTCCTC
CTTGTTGCAGGACTTGTCGCAATCGTGTGCAGCGCATTTATTCAAGTCGG
TGGACAGGTTTTTATCGGTTGTGATCATCTCGCTGCTTTCGCCGAGCAAT
GCGCCACTTGTTGATGTAAGTGGCCTTATGCCAACCAAATTAAACACGCT
GTATAGAACTTGCTCGTACAACAGCGAGTTGGGCTTGAAATGGGCAGAAG
AAAGATTGGGAGACATGTTGGCCTCCATGAGAAAAACTTTCAGATCCTCG
TCAATAAACAAATCGAATCGCATCAGATCGAAAAAGTTGTGAGTCCTGTA
GGATCGCAGTATGTTAACGATGTCCTTCTCCTTGGCCGCAATCGTGGTGC
GTACTATGTGCTCCACTTGAGGCCAAATCTGGGCGGGATCCTTGCCCTGA
TCTCGGACATAGGCTTCAAAAACGGTGCGCATGCTGCCGCCAAAGCGATT
GTAGTACTTGCGCAGCGAAGGAACCTCCCAGGTGGGTAAATAGTCATCCC
CCACAATGTACTTGTCCACATTCTCGGCATCGAAGGGATGGTATTTCACC
GGGCAATACCGGAACAGAACGTCGCCCGTGTAGATGTAGACTCGCAAAGG
ATTAACCGAGGTAATGACTACATAGACGCCGATGTCGAACTTGTGGCCAT
CCACCAGATAGGGTCGCTGCACGAATTCCTGGACAAAGGAATCGTTCCAT
C
BS05011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-PA | 1551 | CG4089-RA | 621..1551 | 947..17 | 4630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-RA | 2022 | CG4089-RA | 710..1645 | 951..16 | 4650 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10816064..10816668 | 951..347 | 2995 | 99.7 | Minus |
3R | 32079331 | 3R | 10816724..10816937 | 347..134 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 10816996..10817113 | 133..16 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:13:53 has no hits.
BS05011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:29 Download gff for
BS05011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-PA | 617..1551 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:18 Download gff for
BS05011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-PA | 617..1551 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:42:33 Download gff for
BS05011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 710..1645 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:27 Download gff for
BS05011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 710..1645 | 16..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:27 Download gff for
BS05011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10816064..10816667 | 348..951 | 99 | -> | Minus |
3R | 10816724..10816937 | 134..347 | 100 | -> | Minus |
3R | 10816996..10817113 | 16..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:42:33 Download gff for
BS05011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6642718..6642835 | 16..133 | 100 | | Minus |
arm_3R | 6641786..6642389 | 348..951 | 99 | -> | Minus |
arm_3R | 6642446..6642659 | 134..347 | 100 | -> | Minus |
BS05011.5prime Sequence
866 bp (794 high quality bases) assembled on 2005-12-02
> BS05011.5prime
GAAGTTATCAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATC
AAAAGGAGGTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCA
TCGAACAGCATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGT
GGCCACGGCCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCC
CCTGGAAGTTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACA
TATGCGATCTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGT
CAATGTGCTGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCT
GGAATCTCTTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTC
AAGAATCTCGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTA
CCTAACTAACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGC
GTGCCTTTCGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGG
GAGAATCCCCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACAT
TAAGGTGCGCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTG
TCCAGGAATTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGAC
ATCGGCGTCTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACAT
CTACACGGGCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCT
TCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGGATGACTATTTACC
CACCTTGGGAGGTTCC
BS05011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-PA | 1551 | CG4089-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-RA | 2022 | CG4089-RA | 94..941 | 17..866 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10815502..10816295 | 71..866 | 3880 | 99.7 | Plus |
3R | 32079331 | 3R | 10815381..10815434 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:58:12 has no hits.
BS05011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:30 Download gff for
BS05011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-PA | 1..848 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:19 Download gff for
BS05011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-PA | 1..848 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:25:04 Download gff for
BS05011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 89..941 | 11..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:56:28 Download gff for
BS05011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 89..941 | 11..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:56:28 Download gff for
BS05011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10815502..10816295 | 71..866 | 99 | | Plus |
3R | 10815376..10815434 | 11..70 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:25:04 Download gff for
BS05011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6641098..6641156 | 11..70 | 96 | -> | Plus |
arm_3R | 6641224..6642017 | 71..866 | 99 | | Plus |
BS05011.complete Sequence
1583 bp (1583 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635035
> BS05011.complete
GAAGTTATCAGTCGACATGGATGCCAGTGTAGTGGAGAATGCTCCTAATC
AAAAGGAGGTAGATGGCAAAATGGCTACAACGGAGGAGTCCGAAAAGCCA
TCGAACAGCATTGGACTGCTGCCCATTATGATATTTCTGGCGGCGACAGT
GGCCACGGCCGTGGTGGTGGAGGTGCTGCCCCATGCCAGCAGAGTCTTCC
CCTGGAAGTTAGCAGATTCTTCAGCGGATCAGCTGCAGCCACCGCCCACA
TATGCGATCTTTGGTCGCAGTCCCACGGAGGAGCACCTGGTGCATGTGGT
CAATGTGCTGCACAAGTTTGGCTATAAAAGAGTGGGAGTTAACGATAGCT
GGAATCTCTTGTGGGCCCACGACTATCCATTTCTTTCGTTCGCCAATCTC
AAGAATCTCGGACAGCATCAGGTGGTGAACCATTACCCAGGCTGCGGTTA
CCTAACTAACAAGGTGGACCTATGCACCACCCAGTTGCCCTTTCTACCGC
GTGCCTTTCGATTGCCAGCGGAACGGGAGGAGTTCCTGGACTACGCCAGG
GAGAATCCCCAGGCACTGTTCGTCCAGAAGCACAACGAGCATCGGCACAT
TAAGGTGCGCGCTCCCGCTGACATTGCCTTCGGATCGAACGACTCCTTTG
TCCAGGAATTCGTGCAGCGACCCTATCTGGTGGATGGCCACAAGTTCGAC
ATCGGCGTCTATGTAGTCATTACCTCGGTTAATCCTTTGCGAGTCTACAT
CTACACGGGCGACGTTCTGTTCCGGTATTGCCCGGTGAAATACCATCCCT
TCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGATGACTATTTACCC
ACCTGGGAGGTTCCTTCGCTGCGCAAGTACTACAATCGCTTTGGCGGCAG
CATGCGCACCGTTTTTGAAGCCTATGTCCGAGATCAGGGCAAGGATCCCG
CCCAGATTTGGCCTCAAGTGGAGCACATAGTACGCACCACGATTGCGGCC
AAGGAGAAGGACATCGTTAACATACTGCGATCCTACAGGACTCACAACTT
TTTCGATCTGATGCGATTCGATTTGTTTATTGACGAGGATCTGAAAGTTT
TTCTCATGGAGGCCAACATGTCTCCCAATCTTTCTTCTGCCCATTTCAAG
CCCAACTCGCTGTTGTACGAGCAAGTTCTATACAGCGTGTTTAATTTGGT
TGGCATAAGGCCACTTACATCAACAAGTGGCGCATTGCTCGGCGAAAGCA
GCGAGATGATCACAACCGATAAAAACCTGTCCACCGACTTGAATAAATGC
GCTGCACACGATTGCGACAAGTCCTGCAACAAGGAGGAGTGCGATCTTTG
CCTGCAATGCCTCAGTGGCTCGGAGTACAAGATGCTGCAACAGGCTCATC
AGGAGCATCTGCATCGCGTGGACATGAAGCGCATTTTCCCTAAGCCCATT
CGCGATCCAATGAGATTCGATGTTATGGCGGAAACTGCAAACATGTCAAA
GAAAAACGCATGGATGACCCGCTGGTTCCACAACAAATGCCAATTTGATG
CTGTCTGGTGCAATTAGAAGCTTTCTAGACCAT
BS05011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-RA | 1551 | CG4089-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-RA | 2022 | CG4089-RA | 94..1645 | 17..1568 | 7760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10815502..10816668 | 71..1237 | 5835 | 100 | Plus |
3R | 32079331 | 3R | 10816724..10816937 | 1237..1450 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 10816996..10817113 | 1451..1568 | 590 | 100 | Plus |
3R | 32079331 | 3R | 10815381..10815434 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:42:04 has no hits.
BS05011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:28 Download gff for
BS05011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 1..1551 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:55 Download gff for
BS05011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 86..1642 | 11..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:56 Download gff for
BS05011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 94..1644 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:28 Download gff for
BS05011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 86..1642 | 11..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:18 Download gff for
BS05011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4089-RA | 94..1644 | 17..1567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:18 Download gff for
BS05011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10816724..10816937 | 1237..1450 | 100 | -> | Plus |
3R | 10816996..10817112 | 1451..1567 | 100 | | Plus |
3R | 10815381..10815434 | 17..70 | 100 | -> | Plus |
3R | 10815502..10816667 | 71..1236 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:56 Download gff for
BS05011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6641103..6641156 | 17..70 | 100 | -> | Plus |
arm_3R | 6641224..6642389 | 71..1236 | 100 | -> | Plus |
arm_3R | 6642446..6642659 | 1237..1450 | 100 | -> | Plus |
arm_3R | 6642718..6642834 | 1451..1567 | 100 | | Plus |
BS05011.pep Sequence
Translation from 16 to 1566
> BS05011.pep
MDASVVENAPNQKEVDGKMATTEESEKPSNSIGLLPIMIFLAATVATAVV
VEVLPHASRVFPWKLADSSADQLQPPPTYAIFGRSPTEEHLVHVVNVLHK
FGYKRVGVNDSWNLLWAHDYPFLSFANLKNLGQHQVVNHYPGCGYLTNKV
DLCTTQLPFLPRAFRLPAEREEFLDYARENPQALFVQKHNEHRHIKVRAP
ADIAFGSNDSFVQEFVQRPYLVDGHKFDIGVYVVITSVNPLRVYIYTGDV
LFRYCPVKYHPFDAENVDKYIVGDDYLPTWEVPSLRKYYNRFGGSMRTVF
EAYVRDQGKDPAQIWPQVEHIVRTTIAAKEKDIVNILRSYRTHNFFDLMR
FDLFIDEDLKVFLMEANMSPNLSSAHFKPNSLLYEQVLYSVFNLVGIRPL
TSTSGALLGESSEMITTDKNLSTDLNKCAAHDCDKSCNKEECDLCLQCLS
GSEYKMLQQAHQEHLHRVDMKRIFPKPIRDPMRFDVMAETANMSKKNAWM
TRWFHNKCQFDAVWCN*
BS05011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4089-PA | 516 | CG4089-PA | 1..516 | 1..516 | 2770 | 100 | Plus |
CG5987-PA | 720 | CG5987-PA | 166..452 | 102..371 | 265 | 27.1 | Plus |
CG16716-PC | 867 | CG16716-PC | 143..440 | 94..374 | 256 | 25.2 | Plus |
CG16833-PM | 827 | CG16833-PM | 339..634 | 97..374 | 230 | 26.1 | Plus |
CG16833-PK | 827 | CG16833-PK | 339..634 | 97..374 | 230 | 26.1 | Plus |