Clone BS05012 Report

Search the DGRC for BS05012

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptLarp7-RA
Protein status:BS05012.pep: full length peptide match
Sequenced Size:1820

Clone Sequence Records

BS05012.3prime Sequence

892 bp (889 high quality bases) assembled on 2005-12-02

> BS05012.3prime
ATGGTCTAGAAAGCTTTCAGTCCATGGCGGCCGCCTGCACTTCATCATCG
CCATCATCAAACTTAATGTGCTTGCCCAGCATTTTGCCCACTTTCTCGCG
ACCGCGTTTTTGCTGCACGCGCACCTTTTTCGAGAGTTTCGCCTCGCGAT
CCTGCTCGATTTTTCGCCAATAGAGCGTCTCCTGCTGGCCAGAGAGCACT
TTCAGCTGCCTCTCGGAGCAGTTGACCTGGCGTAGCAGTTCCTCGGCTGC
GGCAGGCGTGCCCAAACGTAGTAGGGCCACTTGGTCGCCCTCCTTAATAT
CCACATATTTAATATCCGGATATTGGCGCATTTCAGCCTTAAATTCTTTA
ACATTGGTGCATGGTTTTAGCAGGGAGCACTCCACAATCAGCCCGGGCTC
GTATTTAAAGAGCGGCGTGCGTTCCTGCGAAGGTTCTTCGGATTTGGTGG
ATTCCACGCCGCCGGCGCCGTAGAAATTCATGTTCATCTTGTGCACCGCC
TTGCGACGCTTGGCTGGCACAGGCGCTGCTTCTACGGCACCTTCACCGCC
ATCGCTAGGGACCTCGCCTCCGGTTTCCTCCTCTTTAACTGCCTCGGGCA
GCTGTGAAGGTTTCGGATGGTTTGGATGACTGGTCTGCTGGTGGTGAGGG
TGCTGCTGATTTTGTGGGTGATTTTCTCGCCACAGCTTGCTCTTTGCCTC
ACTGACGATGCGACGCTGTAGATTCAAGTACTTATTGCGCATACTGCTCC
AACTAGTCTTGGGTAGCACCTTGAGCTCCAGGGCACTGGGCTCAATGTTT
GGCTTGTCCACGATCGCCTTCTTCTTGCGCTTGCGACGGCGCTTTTTGGC
AGCTTCATCGCCATCGGTTGCCTCTGTTTTGTCCTCCTGCTC

BS05012.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12058-PA 1788 mxc-RA 913..1788 892..17 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
Larp7-RA 2049 CG42569-RA 972..1847 892..17 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9244848..9245723 892..17 4380 100 Minus
Blast to na_te.dros performed on 2015-02-06 13:15:29 has no hits.

BS05012.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:31 Download gff for BS05012.3prime
Subject Subject Range Query Range Percent Splice Strand
mxc-PA 913..1788 17..892 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:20 Download gff for BS05012.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12058-PA 913..1788 17..892 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:50:58 Download gff for BS05012.3prime
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 972..1856 9..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:58:06 Download gff for BS05012.3prime
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 972..1856 9..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:58:06 Download gff for BS05012.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9244848..9245732 9..892 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:50:58 Download gff for BS05012.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9138881..9139765 9..892 99   Minus

BS05012.5prime Sequence

872 bp (785 high quality bases) assembled on 2005-12-02

> BS05012.5prime
GAAGTTATCAGTCGACATGGCTGCCAAGAGTATCGAGAAGGAGAAGGGCG
AGGGTCAGGAGCCCGCGACATCAGCGGAGAAACCCGATCCAGCCGCACCC
ACTGAACCAGCTGAGGAAAATTCCAAAGAACCGGCGCCGGAAGACGCATC
GCCGGATAAAAAGGATGGTGGACGCAAAAGGAAGAGGCATTTGTTCAATT
CGATTCGCGGTCAAATGGAATTCTACTTCGGTGACGCCAACTTGAGCAAG
GATCGCTTCCTTCGGCGCTACGTAGAGCAGGATCCATATGTACCATTGGA
AATCTTTCTCACTTTCAATAAGATAAAGACGCTCACCCAGGATGTGCAGC
AGATAGCCAAGGCACTAAGCAACTCCCAGCTTCTGGAGCTGGATGAGACC
GAACTAAAGGTCAAGCGACGTACCAAGCTACCAGATCAGCGCGATGTCAA
CGACAAAACCTTGTATGTAGAGGCCCTGCCTGCAAATGCCACTCACGATT
GGCTGAAGGAGGTATTCAGCCGCTACGGACCGGTGGCCTACGTGTCCCTG
CCCCACTATCCGGGCACTAAGAAGATCAAGGAATTTGCCTTTATCGAGTT
CGAAAAGAGCGGGTCCTTGGAGAAAGCTGTGAAGGCTTTTGCCCAGATAC
AGGGCGTTTTGTCCGTAGAAACCGATCCCAGTGATCTGGCCAGTGTGCGC
TCCTTTCAGCAGCAGCAGCAGATACAACAGAAAGCGGAGCAGCCGCAGTC
AGAGGCTGAACAGGTTGAGTTGCCAAAGCGAAATCTAAAAAGGGAGGCCA
CCGACAAGGATCGCGAGGAGATACACGAGGTGAAACGGGTTTAGTGGGAG
GAGGGCCAGCCTAGCGAGACCT

BS05012.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12058-PA 1788 mxc-RA 1..856 17..872 4230 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Larp7-RA 2049 CG42569-RA 60..915 17..872 4250 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9244207..9244791 288..872 2895 99.7 Plus
X 23542271 X 9243876..9244146 17..287 1355 100 Plus
Blast to na_te.dros performed 2015-02-12 11:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2498..2541 706..749 130 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6823 707..754 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6790 707..763 113 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6811 707..763 113 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2390 707..748 111 73.8 Plus

BS05012.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:32 Download gff for BS05012.5prime
Subject Subject Range Query Range Percent Splice Strand
mxc-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:21 Download gff for BS05012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12058-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:29 Download gff for BS05012.5prime
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 54..915 9..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:01 Download gff for BS05012.5prime
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 54..915 9..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:01 Download gff for BS05012.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9243870..9244146 9..287 98 -> Plus
X 9244207..9244791 288..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:29 Download gff for BS05012.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9137903..9138179 9..287 98 -> Plus
arm_X 9138240..9138824 288..872 99   Plus

BS05012.complete Sequence

1820 bp assembled on 2008-08-14

GenBank Submission: FJ635036

> BS05012.complete
GAAGTTATCAGTCGACATGGCTGCCAAGAGTATCGAGAAGGAGAAGGGCG
AGGGTCAGGAGCCCGCGACATCAGCGGAGAAACCCGATCCAGCCGCACCC
ACTGAACCAGCTGAGGAAAATTCCAAAGAACCGGCGCCGGAAGACGCATC
GCCGGATAAAAAGGATGGTGGACGCAAAAGGAAGAGGCATTTGTTCAATT
CGATTCGCGGTCAAATGGAATTCTACTTCGGTGACGCCAACTTGAGCAAG
GATCGCTTCCTTCGGCGCTACGTAGAGCAGGATCCATATGTACCATTGGA
AATCTTTCTCACTTTCAATAAGATAAAGACGCTCACCCAGGATGTGCAGC
AGATAGCCAAGGCACTAAGCAACTCCCAGCTTCTGGAGCTGGATGAGACC
GAACTAAAGGTCAAGCGACGTACCAAGCTACCAGATCAGCGCGATGTCAA
CGACAAAACCTTGTATGTAGAGGCCCTGCCTGCAAATGCCACTCACGATT
GGCTGAAGGAGGTATTCAGCCGCTACGGACCGGTGGCCTACGTGTCCCTG
CCCCACTATCCGGGCACTAAGAAGATCAAGGAATTTGCCTTTATCGAGTT
CGAAAAGAGCGGGTCCTTGGAGAAAGCTGTGAAGGCTTTTGCCCAGATAC
AGGGCGTTTTGTCCGTAGAAACCGATCCCAGTGATCTGGCCAGTGTGCGC
TCCTTTCAGCAGCAGCAGCAGATACAACAGAAAGCGGAGCAGCCGCAGTC
AGAGGCTGAACAGGTTGAGTTGCCAAAGCGAAATCTAAAAAGGGAGGCCA
CCGACAAGGATCGCGAGGAGATACACGAGGTGAAACGGGTTAAGTTGGAG
GAGGGCCAGCCTAGCGAGACCTCTACAGCTGGGGAAACAGCGAGTGAAAC
GGATGCAGAGGGCACAGCCGAAGCCTCCGAGCAGGAGGACAAAACAGAGG
CAACCGATGGCGATGAAGCTGCCAAAAAGCGCCGTCGCAAGCGCAAGAAG
AAGGCGATCGTGGACAAGCCAAACATTGAGCCCAGTGCCCTGGAGCTCAA
GGTGCTACCCAAGACTAGTTGGAGCAGTATGCGCAATAAGTACTTGAATC
TACAGCGTCGCATCGTCAGTGAGGCAAAGAGCAAGCTGTGGCGAGAAAAT
CACCCACAAAATCAGCAGCACCCTCACCACCAGCAGACCAGTCATCCAAA
CCATCCGAAACCTTCACAGCTGCCCGAGGCAGTTAAAGAGGAGGAAACCG
GAGGCGAGGTCCCTAGCGATGGCGGTGAAGGTGCCGTAGAAGCAGCGCCT
GTGCCAGCCAAGCGTCGCAAGGCGGTGCACAAGATGAACATGAATTTCTA
CGGCGCCGGCGGCGTGGAATCCACCAAATCCGAAGAACCTTCGCAGGAAC
GCACGCCGCTCTTTAAATACGAGCCCGGGCTGATTGTGGAGTGCTCCCTG
CTAAAACCATGCACCAATGTTAAAGAATTTAAGGCTGAAATGCGCCAATA
TCCGGATATTAAATATGTGGATATTAAGGAGGGCGACCAAGTGGCCCTAC
TACGTTTGGGCACGCCTGCCGCAGCCGAGGAACTGCTACGCCAGGTCAAC
TGCTCCGAGAGGCAGCTGAAAGTGCTCTCTGGCCAGCAGGAGACGCTCTA
TTGGCGAAAAATCGAGCAGGATCGCGAGGCGAAACTCTCGAAAAAGGTGC
GCGTGCAGCAAAAACGCGGTCGCGAGAAAGTGGGCAAAATGCTGGGCAAG
CACATTAAGTTTGATGATGGCGATGATGAAGTGCAGGCGGCCGCCATGGA
CTGAAAGCTTTCTAGACCAT

BS05012.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Larp7-RA 1788 CG42569-PA 1..1788 17..1804 8940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Larp7-RA 2049 CG42569-RA 60..1847 17..1804 8940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9244207..9245723 288..1804 7585 100 Plus
X 23542271 X 9243876..9244146 17..287 1355 100 Plus
Blast to na_te.dros performed 2014-11-27 13:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2498..2541 706..749 130 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6823 707..754 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6790 707..763 113 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6811 707..763 113 70.7 Plus

BS05012.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:39 Download gff for BS05012.complete
Subject Subject Range Query Range Percent Splice Strand
mxc-RA 46..1848 9..1812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:44 Download gff for BS05012.complete
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 60..1846 17..1803 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:38 Download gff for BS05012.complete
Subject Subject Range Query Range Percent Splice Strand
mxc-RA 52..1838 17..1803 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:27 Download gff for BS05012.complete
Subject Subject Range Query Range Percent Splice Strand
Larp7-RA 60..1846 17..1803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:27 Download gff for BS05012.complete
Subject Subject Range Query Range Percent Splice Strand
X 9243876..9244146 17..287 100 -> Plus
X 9244207..9245722 288..1803 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:44 Download gff for BS05012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9137909..9138179 17..287 100 -> Plus
arm_X 9138240..9139755 288..1803 100   Plus

BS05012.pep Sequence

Translation from 16 to 1803

> BS05012.pep
MAAKSIEKEKGEGQEPATSAEKPDPAAPTEPAEENSKEPAPEDASPDKKD
GGRKRKRHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQDPYVPLEIFLTF
NKIKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKLPDQRDVNDKTLY
VEALPANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGS
LEKAVKAFAQIQGVLSVETDPSDLASVRSFQQQQQIQQKAEQPQSEAEQV
ELPKRNLKREATDKDREEIHEVKRVKLEEGQPSETSTAGETASETDAEGT
AEASEQEDKTEATDGDEAAKKRRRKRKKKAIVDKPNIEPSALELKVLPKT
SWSSMRNKYLNLQRRIVSEAKSKLWRENHPQNQQHPHHQQTSHPNHPKPS
QLPEAVKEEETGGEVPSDGGEGAVEAAPVPAKRRKAVHKMNMNFYGAGGV
ESTKSEEPSQERTPLFKYEPGLIVECSLLKPCTNVKEFKAEMRQYPDIKY
VDIKEGDQVALLRLGTPAAAEELLRQVNCSERQLKVLSGQQETLYWRKIE
QDREAKLSKKVRVQQKRGREKVGKMLGKHIKFDDGDDEVQAAAMD*

BS05012.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Larp7-PA 595 CG42569-PA 1..595 1..595 3059 100 Plus
La-PA 390 CG10922-PA 2..350 17..334 240 25.1 Plus