Clone Sequence Records
BS05012.3prime Sequence
892 bp (889 high quality bases) assembled on 2005-12-02
> BS05012.3prime
ATGGTCTAGAAAGCTTTCAGTCCATGGCGGCCGCCTGCACTTCATCATCG
CCATCATCAAACTTAATGTGCTTGCCCAGCATTTTGCCCACTTTCTCGCG
ACCGCGTTTTTGCTGCACGCGCACCTTTTTCGAGAGTTTCGCCTCGCGAT
CCTGCTCGATTTTTCGCCAATAGAGCGTCTCCTGCTGGCCAGAGAGCACT
TTCAGCTGCCTCTCGGAGCAGTTGACCTGGCGTAGCAGTTCCTCGGCTGC
GGCAGGCGTGCCCAAACGTAGTAGGGCCACTTGGTCGCCCTCCTTAATAT
CCACATATTTAATATCCGGATATTGGCGCATTTCAGCCTTAAATTCTTTA
ACATTGGTGCATGGTTTTAGCAGGGAGCACTCCACAATCAGCCCGGGCTC
GTATTTAAAGAGCGGCGTGCGTTCCTGCGAAGGTTCTTCGGATTTGGTGG
ATTCCACGCCGCCGGCGCCGTAGAAATTCATGTTCATCTTGTGCACCGCC
TTGCGACGCTTGGCTGGCACAGGCGCTGCTTCTACGGCACCTTCACCGCC
ATCGCTAGGGACCTCGCCTCCGGTTTCCTCCTCTTTAACTGCCTCGGGCA
GCTGTGAAGGTTTCGGATGGTTTGGATGACTGGTCTGCTGGTGGTGAGGG
TGCTGCTGATTTTGTGGGTGATTTTCTCGCCACAGCTTGCTCTTTGCCTC
ACTGACGATGCGACGCTGTAGATTCAAGTACTTATTGCGCATACTGCTCC
AACTAGTCTTGGGTAGCACCTTGAGCTCCAGGGCACTGGGCTCAATGTTT
GGCTTGTCCACGATCGCCTTCTTCTTGCGCTTGCGACGGCGCTTTTTGGC
AGCTTCATCGCCATCGGTTGCCTCTGTTTTGTCCTCCTGCTC
BS05012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12058-PA | 1788 | mxc-RA | 913..1788 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Larp7-RA | 2049 | CG42569-RA | 972..1847 | 892..17 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9244848..9245723 | 892..17 | 4380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:15:29 has no hits.
BS05012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:31 Download gff for
BS05012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mxc-PA | 913..1788 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:20 Download gff for
BS05012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12058-PA | 913..1788 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:50:58 Download gff for
BS05012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Larp7-RA | 972..1856 | 9..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:58:06 Download gff for
BS05012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Larp7-RA | 972..1856 | 9..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:58:06 Download gff for
BS05012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9244848..9245732 | 9..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:50:58 Download gff for
BS05012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9138881..9139765 | 9..892 | 99 | | Minus |
BS05012.5prime Sequence
872 bp (785 high quality bases) assembled on 2005-12-02
> BS05012.5prime
GAAGTTATCAGTCGACATGGCTGCCAAGAGTATCGAGAAGGAGAAGGGCG
AGGGTCAGGAGCCCGCGACATCAGCGGAGAAACCCGATCCAGCCGCACCC
ACTGAACCAGCTGAGGAAAATTCCAAAGAACCGGCGCCGGAAGACGCATC
GCCGGATAAAAAGGATGGTGGACGCAAAAGGAAGAGGCATTTGTTCAATT
CGATTCGCGGTCAAATGGAATTCTACTTCGGTGACGCCAACTTGAGCAAG
GATCGCTTCCTTCGGCGCTACGTAGAGCAGGATCCATATGTACCATTGGA
AATCTTTCTCACTTTCAATAAGATAAAGACGCTCACCCAGGATGTGCAGC
AGATAGCCAAGGCACTAAGCAACTCCCAGCTTCTGGAGCTGGATGAGACC
GAACTAAAGGTCAAGCGACGTACCAAGCTACCAGATCAGCGCGATGTCAA
CGACAAAACCTTGTATGTAGAGGCCCTGCCTGCAAATGCCACTCACGATT
GGCTGAAGGAGGTATTCAGCCGCTACGGACCGGTGGCCTACGTGTCCCTG
CCCCACTATCCGGGCACTAAGAAGATCAAGGAATTTGCCTTTATCGAGTT
CGAAAAGAGCGGGTCCTTGGAGAAAGCTGTGAAGGCTTTTGCCCAGATAC
AGGGCGTTTTGTCCGTAGAAACCGATCCCAGTGATCTGGCCAGTGTGCGC
TCCTTTCAGCAGCAGCAGCAGATACAACAGAAAGCGGAGCAGCCGCAGTC
AGAGGCTGAACAGGTTGAGTTGCCAAAGCGAAATCTAAAAAGGGAGGCCA
CCGACAAGGATCGCGAGGAGATACACGAGGTGAAACGGGTTTAGTGGGAG
GAGGGCCAGCCTAGCGAGACCT
BS05012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12058-PA | 1788 | mxc-RA | 1..856 | 17..872 | 4230 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Larp7-RA | 2049 | CG42569-RA | 60..915 | 17..872 | 4250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9244207..9244791 | 288..872 | 2895 | 99.7 | Plus |
X | 23542271 | X | 9243876..9244146 | 17..287 | 1355 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2498..2541 | 706..749 | 130 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6823 | 707..754 | 123 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6790 | 707..763 | 113 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6811 | 707..763 | 113 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2390 | 707..748 | 111 | 73.8 | Plus |
BS05012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:32 Download gff for
BS05012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mxc-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:21 Download gff for
BS05012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12058-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:29 Download gff for
BS05012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Larp7-RA | 54..915 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:01 Download gff for
BS05012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Larp7-RA | 54..915 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:01 Download gff for
BS05012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9243870..9244146 | 9..287 | 98 | -> | Plus |
X | 9244207..9244791 | 288..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:29 Download gff for
BS05012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9137903..9138179 | 9..287 | 98 | -> | Plus |
arm_X | 9138240..9138824 | 288..872 | 99 | | Plus |
BS05012.complete Sequence
1820 bp assembled on 2008-08-14
GenBank Submission: FJ635036
> BS05012.complete
GAAGTTATCAGTCGACATGGCTGCCAAGAGTATCGAGAAGGAGAAGGGCG
AGGGTCAGGAGCCCGCGACATCAGCGGAGAAACCCGATCCAGCCGCACCC
ACTGAACCAGCTGAGGAAAATTCCAAAGAACCGGCGCCGGAAGACGCATC
GCCGGATAAAAAGGATGGTGGACGCAAAAGGAAGAGGCATTTGTTCAATT
CGATTCGCGGTCAAATGGAATTCTACTTCGGTGACGCCAACTTGAGCAAG
GATCGCTTCCTTCGGCGCTACGTAGAGCAGGATCCATATGTACCATTGGA
AATCTTTCTCACTTTCAATAAGATAAAGACGCTCACCCAGGATGTGCAGC
AGATAGCCAAGGCACTAAGCAACTCCCAGCTTCTGGAGCTGGATGAGACC
GAACTAAAGGTCAAGCGACGTACCAAGCTACCAGATCAGCGCGATGTCAA
CGACAAAACCTTGTATGTAGAGGCCCTGCCTGCAAATGCCACTCACGATT
GGCTGAAGGAGGTATTCAGCCGCTACGGACCGGTGGCCTACGTGTCCCTG
CCCCACTATCCGGGCACTAAGAAGATCAAGGAATTTGCCTTTATCGAGTT
CGAAAAGAGCGGGTCCTTGGAGAAAGCTGTGAAGGCTTTTGCCCAGATAC
AGGGCGTTTTGTCCGTAGAAACCGATCCCAGTGATCTGGCCAGTGTGCGC
TCCTTTCAGCAGCAGCAGCAGATACAACAGAAAGCGGAGCAGCCGCAGTC
AGAGGCTGAACAGGTTGAGTTGCCAAAGCGAAATCTAAAAAGGGAGGCCA
CCGACAAGGATCGCGAGGAGATACACGAGGTGAAACGGGTTAAGTTGGAG
GAGGGCCAGCCTAGCGAGACCTCTACAGCTGGGGAAACAGCGAGTGAAAC
GGATGCAGAGGGCACAGCCGAAGCCTCCGAGCAGGAGGACAAAACAGAGG
CAACCGATGGCGATGAAGCTGCCAAAAAGCGCCGTCGCAAGCGCAAGAAG
AAGGCGATCGTGGACAAGCCAAACATTGAGCCCAGTGCCCTGGAGCTCAA
GGTGCTACCCAAGACTAGTTGGAGCAGTATGCGCAATAAGTACTTGAATC
TACAGCGTCGCATCGTCAGTGAGGCAAAGAGCAAGCTGTGGCGAGAAAAT
CACCCACAAAATCAGCAGCACCCTCACCACCAGCAGACCAGTCATCCAAA
CCATCCGAAACCTTCACAGCTGCCCGAGGCAGTTAAAGAGGAGGAAACCG
GAGGCGAGGTCCCTAGCGATGGCGGTGAAGGTGCCGTAGAAGCAGCGCCT
GTGCCAGCCAAGCGTCGCAAGGCGGTGCACAAGATGAACATGAATTTCTA
CGGCGCCGGCGGCGTGGAATCCACCAAATCCGAAGAACCTTCGCAGGAAC
GCACGCCGCTCTTTAAATACGAGCCCGGGCTGATTGTGGAGTGCTCCCTG
CTAAAACCATGCACCAATGTTAAAGAATTTAAGGCTGAAATGCGCCAATA
TCCGGATATTAAATATGTGGATATTAAGGAGGGCGACCAAGTGGCCCTAC
TACGTTTGGGCACGCCTGCCGCAGCCGAGGAACTGCTACGCCAGGTCAAC
TGCTCCGAGAGGCAGCTGAAAGTGCTCTCTGGCCAGCAGGAGACGCTCTA
TTGGCGAAAAATCGAGCAGGATCGCGAGGCGAAACTCTCGAAAAAGGTGC
GCGTGCAGCAAAAACGCGGTCGCGAGAAAGTGGGCAAAATGCTGGGCAAG
CACATTAAGTTTGATGATGGCGATGATGAAGTGCAGGCGGCCGCCATGGA
CTGAAAGCTTTCTAGACCAT
BS05012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Larp7-RA | 1788 | CG42569-PA | 1..1788 | 17..1804 | 8940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Larp7-RA | 2049 | CG42569-RA | 60..1847 | 17..1804 | 8940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9244207..9245723 | 288..1804 | 7585 | 100 | Plus |
X | 23542271 | X | 9243876..9244146 | 17..287 | 1355 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2498..2541 | 706..749 | 130 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6823 | 707..754 | 123 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6790 | 707..763 | 113 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6811 | 707..763 | 113 | 70.7 | Plus |
BS05012.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:39 Download gff for
BS05012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mxc-RA | 46..1848 | 9..1812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:44 Download gff for
BS05012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Larp7-RA | 60..1846 | 17..1803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:38 Download gff for
BS05012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mxc-RA | 52..1838 | 17..1803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:27 Download gff for
BS05012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Larp7-RA | 60..1846 | 17..1803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:27 Download gff for
BS05012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9243876..9244146 | 17..287 | 100 | -> | Plus |
X | 9244207..9245722 | 288..1803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:44 Download gff for
BS05012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9137909..9138179 | 17..287 | 100 | -> | Plus |
arm_X | 9138240..9139755 | 288..1803 | 100 | | Plus |
BS05012.pep Sequence
Translation from 16 to 1803
> BS05012.pep
MAAKSIEKEKGEGQEPATSAEKPDPAAPTEPAEENSKEPAPEDASPDKKD
GGRKRKRHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQDPYVPLEIFLTF
NKIKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKLPDQRDVNDKTLY
VEALPANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGS
LEKAVKAFAQIQGVLSVETDPSDLASVRSFQQQQQIQQKAEQPQSEAEQV
ELPKRNLKREATDKDREEIHEVKRVKLEEGQPSETSTAGETASETDAEGT
AEASEQEDKTEATDGDEAAKKRRRKRKKKAIVDKPNIEPSALELKVLPKT
SWSSMRNKYLNLQRRIVSEAKSKLWRENHPQNQQHPHHQQTSHPNHPKPS
QLPEAVKEEETGGEVPSDGGEGAVEAAPVPAKRRKAVHKMNMNFYGAGGV
ESTKSEEPSQERTPLFKYEPGLIVECSLLKPCTNVKEFKAEMRQYPDIKY
VDIKEGDQVALLRLGTPAAAEELLRQVNCSERQLKVLSGQQETLYWRKIE
QDREAKLSKKVRVQQKRGREKVGKMLGKHIKFDDGDDEVQAAAMD*
BS05012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Larp7-PA | 595 | CG42569-PA | 1..595 | 1..595 | 3059 | 100 | Plus |
La-PA | 390 | CG10922-PA | 2..350 | 17..334 | 240 | 25.1 | Plus |