Clone BS05016 Report

Search the DGRC for BS05016

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptcm-RA
Protein status:BS05016.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05016.3prime Sequence

951 bp (899 high quality bases) assembled on 2005-12-02

> BS05016.3prime
ATGGTCTAGAAAGCTTCTACATCCGCACCTGGAACTTGCCCGCCTTGGTC
AGGTATTTGACGCCCTTGAAAGGCTTGTACTTCTCGCCGTACATGTCCAG
GCGATTTACCTTTAGCCCAGAGACGGCCAGCTGCGAGATTTGGAACTGGA
CATTCACGGATGGATTGGCATCGATGTTGGTCGTACCGGGCGTAATGGAA
ACCGATCCCCTAATATTTGGCAACTTGGAAACATCGATCCGTCCCACATC
CCAGGACAGCGTCTTGGTCACCGAATCGAAGGTATACTTTCCCTGATTCG
GCGTCAATAGGCAATTAAGCACACACCGCGGCATGGTCAGCTCCAGCTTC
ACCTTGTCAACGGTGCGACCAAGGGTGTTCCTCGGGCCAATCGTGAGGTC
CAGACGCCCCTGCTCACCCGTTTTGATCGAAAAGTTGTGCCTGATGTAGA
TGGGTATGGCCACCACGGACTGAGAGCTAATGTGATATGACATCAGGCGG
AAGTTTCCGTCGGGCGGGATAAAGGAGAGCAGGCGCTCCGCCTCCCAGCG
CTTGTAGCGCACGCAAGGATGGAAGGAAACGTCGTCGAAGAGGCGAGGAT
TCATGAAAGATAACGTCAGATCTGGCATGCCGGATAACTTAATGCAGCAG
TCGATGTGTCCCTGGATCTCGGCAAAGACCGTGGATCCGGATTTATCAAT
GATAGCGTCCACCTCCTCGATGACATCGAAGTACGCCTCGTTGTTGGTGT
ACCTCACGCCGCTTCTGCGCCAGCGAACCGCCGACAGCTGACCCGAGGGC
AAAGTAGTGCTTACATTGCTCTTGCCCGTCACCGTGTTGGGCATGGTGCG
CAGGATATTGGGCGGGCTGATCAGCTCCTTGAGGATGTTGCTCTCGGTGG
CCAGTGGGAAGCCATTATCGAGCATCTCGTCCAGCAGCTCGTAACGACCA
C

BS05016.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3035-PA 1248 cm-RA 321..1248 944..17 4540 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
cm-RB 1774 CG3035-RB 367..1303 951..16 4600 99.5 Minus
cm-RA 1469 CG3035-RA 367..1303 951..16 4600 99.5 Minus
Inx7-RB 1690 CG2977-RB 1..271 298..28 1355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7009772..7010226 201..655 2275 100 Plus
X 23542271 X 7009477..7009664 16..203 940 100 Plus
X 23542271 X 7010283..7010442 656..815 800 100 Plus
X 23542271 X 7010519..7010647 816..944 585 96.9 Plus
Blast to na_te.dros performed on 2015-02-11 23:20:36 has no hits.

BS05016.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:59:40 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:32 Download gff for BS05016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3035-PA 313..1248 17..951 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:55:42 Download gff for BS05016.3prime
Subject Subject Range Query Range Percent Splice Strand
cm-RA 367..1303 16..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:11 Download gff for BS05016.3prime
Subject Subject Range Query Range Percent Splice Strand
cm-RA 367..1303 16..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:11 Download gff for BS05016.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7009477..7009663 16..202 100 <- Plus
X 7009774..7010226 203..655 100 <- Plus
X 7010283..7010442 656..815 100 <- Plus
X 7010519..7010655 816..951 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:55:42 Download gff for BS05016.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6903510..6903696 16..202 100 <- Plus
arm_X 6903807..6904259 203..655 100 <- Plus
arm_X 6904316..6904475 656..815 100 <- Plus
arm_X 6904552..6904688 816..951 96   Plus

BS05016.5prime Sequence

885 bp (771 high quality bases) assembled on 2005-11-29

> BS05016.5prime
GAAGTTATCAGTCGACATGATACACAGTCTGTTTATTGTAAACAGCGGCG
GCGAGGTCTTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTG
TGCGAATACTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGTGCCGCC
GGTGATAGCCACGCCCCACTACTACCTGATTACAGTGCAAAGGGACACGG
TGTCTTTGGTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTTGTCATC
GAGTTCCTGCATCGCGTGGTGGACACCTTCCAGGACTATTTCGGCGACTG
CTCCGAGTCCGTGATCAAGGACAACTATGTGGTCGTTTACGAGCTGCTGG
ACGAGATGCTCGATAATGGCTTCCCACTGGCCACCGAGAGCAACATCCTC
AAGGAGCTGATCAAGCCGCCCAATATCCTGCGCACCATTGCCAACACGGT
GACGGGCAAGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAGCTGTCGG
CGGTTCGCTGGCGCAGAAGCGGCGTGAGGTACACCAACAACGAGGCGTAC
TTCGATGTCATCGAGGAGGTGGACGCTATCATTGATAAATCCGGATCCAC
GGTCTTTGCCGAGATCCAGGGACACATCGACTGCTGCATTAAGTTATCCG
GCATGCCAGATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACGAC
GTTTCCTTCCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGGAGCGCCT
GCTCTCCTTTATCCCGCCCGACGGAAACTTCCGCCTGATGTCATATCACA
TTAGCTCTCAGTCCGTGGTGGCCATACCCATCTACATCAGGCACAACTTT
TCGATCAAAACGGGTGAGCAGGGGCGTCTGGACCT

BS05016.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3035-PA 1248 cm-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
cm-RB 1774 CG3035-RB 55..923 17..885 4345 100 Plus
cm-RA 1469 CG3035-RA 55..923 17..885 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7010519..7010844 465..140 1630 100 Minus
X 23542271 X 7009967..7010226 885..626 1300 100 Minus
X 23542271 X 7010283..7010442 625..466 800 100 Minus
X 23542271 X 7010899..7010988 140..51 450 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:29:56 has no hits.

BS05016.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:59:41 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:34 Download gff for BS05016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3035-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:11 Download gff for BS05016.5prime
Subject Subject Range Query Range Percent Splice Strand
cm-RA 47..923 11..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:37 Download gff for BS05016.5prime
Subject Subject Range Query Range Percent Splice Strand
cm-RA 47..923 11..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:37 Download gff for BS05016.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7009967..7010226 626..885 100 <- Minus
X 7010283..7010442 466..625 100 <- Minus
X 7011057..7011099 11..51 93   Minus
X 7010519..7010844 140..465 100 <- Minus
X 7010900..7010987 52..139 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:11 Download gff for BS05016.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6904000..6904259 626..885 100 <- Minus
arm_X 6904316..6904475 466..625 100 <- Minus
arm_X 6904552..6904877 140..465 100 <- Minus
arm_X 6904933..6905020 52..139 100 <- Minus
arm_X 6905090..6905132 11..51 93   Minus

BS05016.complete Sequence

1280 bp (1280 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635038

> BS05016.complete
GAAGTTATCAGTCGACATGATACACAGTCTGTTTATTGTAAACAGCGGCG
GCGAGGTCTTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTG
TGCGAATACTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGTGCCGCC
GGTGATAGCCACGCCCCACTACTACCTGATTACAGTGCAAAGGGACACGG
TGTCTTTGGTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTTGTCATC
GAGTTCCTGCATCGCGTGGTGGACACCTTCCAGGACTATTTCGGCGACTG
CTCCGAGTCCGTGATCAAGGACAACTATGTGGTCGTTTACGAGCTGCTGG
ACGAGATGCTCGATAATGGCTTCCCACTGGCCACCGAGAGCAACATCCTC
AAGGAGCTGATCAAGCCGCCCAATATCCTGCGCACCATTGCCAACACGGT
GACGGGCAAGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAGCTGTCGG
CGGTTCGCTGGCGCAGAAGCGGCGTGAGGTACACCAACAACGAGGCGTAC
TTCGATGTCATCGAGGAGGTGGACGCTATCATTGATAAATCCGGATCCAC
GGTCTTTGCCGAGATCCAGGGACACATCGACTGCTGCATTAAGTTATCCG
GCATGCCAGATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACGAC
GTTTCCTTCCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGGAGCGCCT
GCTCTCCTTTATCCCGCCCGACGGAAACTTCCGCCTGATGTCATATCACA
TTAGCTCTCAGTCCGTGGTGGCCATACCCATCTACATCAGGCACAACTTT
TCGATCAAAACGGGTGAGCAGGGGCGTCTGGACCTCACGATTGGCCCGAG
GAACACCCTTGGTCGCACCGTTGACAAGGTGAAGCTGGAGCTGACCATGC
CGCGGTGTGTGCTTAATTGCCTATTGACGCCGAATCAGGGAAAGTATACC
TTCGATTCGGTGACCAAGACGCTGTCCTGGGATGTGGGACGGATCGATGT
TTCCAAGTTGCCAAATATTAGGGGATCGGTTTCCATTACGCCCGGTACGA
CCAACATCGATGCCAATCCATCCGTGAATGTCCAGTTCCAAATCTCGCAG
CTGGCCGTCTCTGGGCTAAAGGTAAATCGCCTGGACATGTACGGCGAGAA
GTACAAGCCTTTCAAGGGCGTCAAATACCTGACCAAGGCGGGCAAGTTCC
AGGTGCGGATGTAGAAGCTTTCTAGACCAT

BS05016.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
cm-RB 1248 CG3035-PB 1..1248 17..1264 6240 100 Plus
cm-RA 1248 CG3035-PA 1..1248 17..1264 6240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
cm-RB 1774 CG3035-RB 55..1303 17..1265 6245 100 Plus
cm-RA 1469 CG3035-RA 55..1303 17..1265 6245 100 Plus
Inx7-RB 1690 CG2977-RB 1..271 983..1253 1355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7009772..7010226 1080..626 2275 100 Minus
X 23542271 X 7010519..7010844 465..140 1630 100 Minus
X 23542271 X 7009477..7009664 1265..1078 940 100 Minus
X 23542271 X 7010283..7010442 625..466 800 100 Minus
X 23542271 X 7010899..7010988 140..51 450 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:53:24 has no hits.

BS05016.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:20 Download gff for BS05016.complete
Subject Subject Range Query Range Percent Splice Strand
cm-RA 1..1248 17..1264 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:44 Download gff for BS05016.complete
Subject Subject Range Query Range Percent Splice Strand
cm-RA 37..1293 11..1265 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:14 Download gff for BS05016.complete
Subject Subject Range Query Range Percent Splice Strand
cm-RA 55..1302 17..1264 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:20 Download gff for BS05016.complete
Subject Subject Range Query Range Percent Splice Strand
cm-RA 37..1293 11..1265 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:23 Download gff for BS05016.complete
Subject Subject Range Query Range Percent Splice Strand
cm-RA 55..1302 17..1264 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:23 Download gff for BS05016.complete
Subject Subject Range Query Range Percent Splice Strand
X 7010519..7010844 140..465 100 <- Minus
X 7010900..7010987 52..139 100 <- Minus
X 7011057..7011091 17..51 100   Minus
X 7009478..7009663 1079..1264 100 <- Minus
X 7009774..7010226 626..1078 100 <- Minus
X 7010283..7010442 466..625 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:14 Download gff for BS05016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6903511..6903696 1079..1264 100 <- Minus
arm_X 6903807..6904259 626..1078 100 <- Minus
arm_X 6904316..6904475 466..625 100 <- Minus
arm_X 6904552..6904877 140..465 100 <- Minus
arm_X 6904933..6905020 52..139 100 <- Minus
arm_X 6905090..6905124 17..51 100   Minus

BS05016.pep Sequence

Translation from 16 to 1263

> BS05016.pep
MIHSLFIVNSGGEVFLEKHWRSVVSRSVCEYFLDAQRAAPYDVPPVIATP
HYYLITVQRDTVSLVAACKQEVPPLFVIEFLHRVVDTFQDYFGDCSESVI
KDNYVVVYELLDEMLDNGFPLATESNILKELIKPPNILRTIANTVTGKSN
VSTTLPSGQLSAVRWRRSGVRYTNNEAYFDVIEEVDAIIDKSGSTVFAEI
QGHIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRYKRWEAERLLSFIP
PDGNFRLMSYHISSQSVVAIPIYIRHNFSIKTGEQGRLDLTIGPRNTLGR
TVDKVKLELTMPRCVLNCLLTPNQGKYTFDSVTKTLSWDVGRIDVSKLPN
IRGSVSITPGTTNIDANPSVNVQFQISQLAVSGLKVNRLDMYGEKYKPFK
GVKYLTKAGKFQVRM*

BS05016.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
cm-PB 415 CG3035-PB 1..415 1..415 2163 100 Plus
cm-PA 415 CG3035-PA 1..415 1..415 2163 100 Plus
AP-1mu-PA 426 CG9388-PA 5..424 4..414 450 27.4 Plus
AP-2mu-PC 437 CG7057-PC 1..436 1..414 416 27.3 Plus
AP-2mu-PB 437 CG7057-PB 1..436 1..414 416 27.3 Plus