Clone Sequence Records
BS05016.3prime Sequence
951 bp (899 high quality bases) assembled on 2005-12-02
> BS05016.3prime
ATGGTCTAGAAAGCTTCTACATCCGCACCTGGAACTTGCCCGCCTTGGTC
AGGTATTTGACGCCCTTGAAAGGCTTGTACTTCTCGCCGTACATGTCCAG
GCGATTTACCTTTAGCCCAGAGACGGCCAGCTGCGAGATTTGGAACTGGA
CATTCACGGATGGATTGGCATCGATGTTGGTCGTACCGGGCGTAATGGAA
ACCGATCCCCTAATATTTGGCAACTTGGAAACATCGATCCGTCCCACATC
CCAGGACAGCGTCTTGGTCACCGAATCGAAGGTATACTTTCCCTGATTCG
GCGTCAATAGGCAATTAAGCACACACCGCGGCATGGTCAGCTCCAGCTTC
ACCTTGTCAACGGTGCGACCAAGGGTGTTCCTCGGGCCAATCGTGAGGTC
CAGACGCCCCTGCTCACCCGTTTTGATCGAAAAGTTGTGCCTGATGTAGA
TGGGTATGGCCACCACGGACTGAGAGCTAATGTGATATGACATCAGGCGG
AAGTTTCCGTCGGGCGGGATAAAGGAGAGCAGGCGCTCCGCCTCCCAGCG
CTTGTAGCGCACGCAAGGATGGAAGGAAACGTCGTCGAAGAGGCGAGGAT
TCATGAAAGATAACGTCAGATCTGGCATGCCGGATAACTTAATGCAGCAG
TCGATGTGTCCCTGGATCTCGGCAAAGACCGTGGATCCGGATTTATCAAT
GATAGCGTCCACCTCCTCGATGACATCGAAGTACGCCTCGTTGTTGGTGT
ACCTCACGCCGCTTCTGCGCCAGCGAACCGCCGACAGCTGACCCGAGGGC
AAAGTAGTGCTTACATTGCTCTTGCCCGTCACCGTGTTGGGCATGGTGCG
CAGGATATTGGGCGGGCTGATCAGCTCCTTGAGGATGTTGCTCTCGGTGG
CCAGTGGGAAGCCATTATCGAGCATCTCGTCCAGCAGCTCGTAACGACCA
C
BS05016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3035-PA | 1248 | cm-RA | 321..1248 | 944..17 | 4540 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cm-RB | 1774 | CG3035-RB | 367..1303 | 951..16 | 4600 | 99.5 | Minus |
cm-RA | 1469 | CG3035-RA | 367..1303 | 951..16 | 4600 | 99.5 | Minus |
Inx7-RB | 1690 | CG2977-RB | 1..271 | 298..28 | 1355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7009772..7010226 | 201..655 | 2275 | 100 | Plus |
X | 23542271 | X | 7009477..7009664 | 16..203 | 940 | 100 | Plus |
X | 23542271 | X | 7010283..7010442 | 656..815 | 800 | 100 | Plus |
X | 23542271 | X | 7010519..7010647 | 816..944 | 585 | 96.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:20:36 has no hits.
BS05016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:59:40 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:32 Download gff for
BS05016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3035-PA | 313..1248 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:55:42 Download gff for
BS05016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 367..1303 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:11 Download gff for
BS05016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 367..1303 | 16..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:11 Download gff for
BS05016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7009477..7009663 | 16..202 | 100 | <- | Plus |
X | 7009774..7010226 | 203..655 | 100 | <- | Plus |
X | 7010283..7010442 | 656..815 | 100 | <- | Plus |
X | 7010519..7010655 | 816..951 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:55:42 Download gff for
BS05016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6903510..6903696 | 16..202 | 100 | <- | Plus |
arm_X | 6903807..6904259 | 203..655 | 100 | <- | Plus |
arm_X | 6904316..6904475 | 656..815 | 100 | <- | Plus |
arm_X | 6904552..6904688 | 816..951 | 96 | | Plus |
BS05016.5prime Sequence
885 bp (771 high quality bases) assembled on 2005-11-29
> BS05016.5prime
GAAGTTATCAGTCGACATGATACACAGTCTGTTTATTGTAAACAGCGGCG
GCGAGGTCTTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTG
TGCGAATACTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGTGCCGCC
GGTGATAGCCACGCCCCACTACTACCTGATTACAGTGCAAAGGGACACGG
TGTCTTTGGTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTTGTCATC
GAGTTCCTGCATCGCGTGGTGGACACCTTCCAGGACTATTTCGGCGACTG
CTCCGAGTCCGTGATCAAGGACAACTATGTGGTCGTTTACGAGCTGCTGG
ACGAGATGCTCGATAATGGCTTCCCACTGGCCACCGAGAGCAACATCCTC
AAGGAGCTGATCAAGCCGCCCAATATCCTGCGCACCATTGCCAACACGGT
GACGGGCAAGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAGCTGTCGG
CGGTTCGCTGGCGCAGAAGCGGCGTGAGGTACACCAACAACGAGGCGTAC
TTCGATGTCATCGAGGAGGTGGACGCTATCATTGATAAATCCGGATCCAC
GGTCTTTGCCGAGATCCAGGGACACATCGACTGCTGCATTAAGTTATCCG
GCATGCCAGATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACGAC
GTTTCCTTCCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGGAGCGCCT
GCTCTCCTTTATCCCGCCCGACGGAAACTTCCGCCTGATGTCATATCACA
TTAGCTCTCAGTCCGTGGTGGCCATACCCATCTACATCAGGCACAACTTT
TCGATCAAAACGGGTGAGCAGGGGCGTCTGGACCT
BS05016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3035-PA | 1248 | cm-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cm-RB | 1774 | CG3035-RB | 55..923 | 17..885 | 4345 | 100 | Plus |
cm-RA | 1469 | CG3035-RA | 55..923 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7010519..7010844 | 465..140 | 1630 | 100 | Minus |
X | 23542271 | X | 7009967..7010226 | 885..626 | 1300 | 100 | Minus |
X | 23542271 | X | 7010283..7010442 | 625..466 | 800 | 100 | Minus |
X | 23542271 | X | 7010899..7010988 | 140..51 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:29:56 has no hits.
BS05016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:59:41 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:34 Download gff for
BS05016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3035-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:11 Download gff for
BS05016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 47..923 | 11..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:37 Download gff for
BS05016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 47..923 | 11..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:37 Download gff for
BS05016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7009967..7010226 | 626..885 | 100 | <- | Minus |
X | 7010283..7010442 | 466..625 | 100 | <- | Minus |
X | 7011057..7011099 | 11..51 | 93 | | Minus |
X | 7010519..7010844 | 140..465 | 100 | <- | Minus |
X | 7010900..7010987 | 52..139 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:11 Download gff for
BS05016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6904000..6904259 | 626..885 | 100 | <- | Minus |
arm_X | 6904316..6904475 | 466..625 | 100 | <- | Minus |
arm_X | 6904552..6904877 | 140..465 | 100 | <- | Minus |
arm_X | 6904933..6905020 | 52..139 | 100 | <- | Minus |
arm_X | 6905090..6905132 | 11..51 | 93 | | Minus |
BS05016.complete Sequence
1280 bp (1280 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635038
> BS05016.complete
GAAGTTATCAGTCGACATGATACACAGTCTGTTTATTGTAAACAGCGGCG
GCGAGGTCTTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTG
TGCGAATACTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGTGCCGCC
GGTGATAGCCACGCCCCACTACTACCTGATTACAGTGCAAAGGGACACGG
TGTCTTTGGTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTTGTCATC
GAGTTCCTGCATCGCGTGGTGGACACCTTCCAGGACTATTTCGGCGACTG
CTCCGAGTCCGTGATCAAGGACAACTATGTGGTCGTTTACGAGCTGCTGG
ACGAGATGCTCGATAATGGCTTCCCACTGGCCACCGAGAGCAACATCCTC
AAGGAGCTGATCAAGCCGCCCAATATCCTGCGCACCATTGCCAACACGGT
GACGGGCAAGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAGCTGTCGG
CGGTTCGCTGGCGCAGAAGCGGCGTGAGGTACACCAACAACGAGGCGTAC
TTCGATGTCATCGAGGAGGTGGACGCTATCATTGATAAATCCGGATCCAC
GGTCTTTGCCGAGATCCAGGGACACATCGACTGCTGCATTAAGTTATCCG
GCATGCCAGATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACGAC
GTTTCCTTCCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGGAGCGCCT
GCTCTCCTTTATCCCGCCCGACGGAAACTTCCGCCTGATGTCATATCACA
TTAGCTCTCAGTCCGTGGTGGCCATACCCATCTACATCAGGCACAACTTT
TCGATCAAAACGGGTGAGCAGGGGCGTCTGGACCTCACGATTGGCCCGAG
GAACACCCTTGGTCGCACCGTTGACAAGGTGAAGCTGGAGCTGACCATGC
CGCGGTGTGTGCTTAATTGCCTATTGACGCCGAATCAGGGAAAGTATACC
TTCGATTCGGTGACCAAGACGCTGTCCTGGGATGTGGGACGGATCGATGT
TTCCAAGTTGCCAAATATTAGGGGATCGGTTTCCATTACGCCCGGTACGA
CCAACATCGATGCCAATCCATCCGTGAATGTCCAGTTCCAAATCTCGCAG
CTGGCCGTCTCTGGGCTAAAGGTAAATCGCCTGGACATGTACGGCGAGAA
GTACAAGCCTTTCAAGGGCGTCAAATACCTGACCAAGGCGGGCAAGTTCC
AGGTGCGGATGTAGAAGCTTTCTAGACCAT
BS05016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cm-RB | 1248 | CG3035-PB | 1..1248 | 17..1264 | 6240 | 100 | Plus |
cm-RA | 1248 | CG3035-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cm-RB | 1774 | CG3035-RB | 55..1303 | 17..1265 | 6245 | 100 | Plus |
cm-RA | 1469 | CG3035-RA | 55..1303 | 17..1265 | 6245 | 100 | Plus |
Inx7-RB | 1690 | CG2977-RB | 1..271 | 983..1253 | 1355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7009772..7010226 | 1080..626 | 2275 | 100 | Minus |
X | 23542271 | X | 7010519..7010844 | 465..140 | 1630 | 100 | Minus |
X | 23542271 | X | 7009477..7009664 | 1265..1078 | 940 | 100 | Minus |
X | 23542271 | X | 7010283..7010442 | 625..466 | 800 | 100 | Minus |
X | 23542271 | X | 7010899..7010988 | 140..51 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:53:24 has no hits.
BS05016.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:20 Download gff for
BS05016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 1..1248 | 17..1264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:44 Download gff for
BS05016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 37..1293 | 11..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:14 Download gff for
BS05016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 55..1302 | 17..1264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:20 Download gff for
BS05016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 37..1293 | 11..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:23 Download gff for
BS05016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cm-RA | 55..1302 | 17..1264 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:23 Download gff for
BS05016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7010519..7010844 | 140..465 | 100 | <- | Minus |
X | 7010900..7010987 | 52..139 | 100 | <- | Minus |
X | 7011057..7011091 | 17..51 | 100 | | Minus |
X | 7009478..7009663 | 1079..1264 | 100 | <- | Minus |
X | 7009774..7010226 | 626..1078 | 100 | <- | Minus |
X | 7010283..7010442 | 466..625 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:14 Download gff for
BS05016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6903511..6903696 | 1079..1264 | 100 | <- | Minus |
arm_X | 6903807..6904259 | 626..1078 | 100 | <- | Minus |
arm_X | 6904316..6904475 | 466..625 | 100 | <- | Minus |
arm_X | 6904552..6904877 | 140..465 | 100 | <- | Minus |
arm_X | 6904933..6905020 | 52..139 | 100 | <- | Minus |
arm_X | 6905090..6905124 | 17..51 | 100 | | Minus |
BS05016.pep Sequence
Translation from 16 to 1263
> BS05016.pep
MIHSLFIVNSGGEVFLEKHWRSVVSRSVCEYFLDAQRAAPYDVPPVIATP
HYYLITVQRDTVSLVAACKQEVPPLFVIEFLHRVVDTFQDYFGDCSESVI
KDNYVVVYELLDEMLDNGFPLATESNILKELIKPPNILRTIANTVTGKSN
VSTTLPSGQLSAVRWRRSGVRYTNNEAYFDVIEEVDAIIDKSGSTVFAEI
QGHIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRYKRWEAERLLSFIP
PDGNFRLMSYHISSQSVVAIPIYIRHNFSIKTGEQGRLDLTIGPRNTLGR
TVDKVKLELTMPRCVLNCLLTPNQGKYTFDSVTKTLSWDVGRIDVSKLPN
IRGSVSITPGTTNIDANPSVNVQFQISQLAVSGLKVNRLDMYGEKYKPFK
GVKYLTKAGKFQVRM*
BS05016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cm-PB | 415 | CG3035-PB | 1..415 | 1..415 | 2163 | 100 | Plus |
cm-PA | 415 | CG3035-PA | 1..415 | 1..415 | 2163 | 100 | Plus |
AP-1mu-PA | 426 | CG9388-PA | 5..424 | 4..414 | 450 | 27.4 | Plus |
AP-2mu-PC | 437 | CG7057-PC | 1..436 | 1..414 | 416 | 27.3 | Plus |
AP-2mu-PB | 437 | CG7057-PB | 1..436 | 1..414 | 416 | 27.3 | Plus |