Clone Sequence Records
BS05017.complete Sequence
2069 bp assembled on 2009-12-07
GenBank Submission: KX794414
> BS05017.complete
GAAGTTATCAGTCGACATGGCGATGCAGAAGTTCTTCAGCGTGCTGCTGC
CGGATGTGAAGCGGGAGCTGCGCCGCGGGATCATCGAGTGCTCCAAGCGG
GGCCTCCTGCACAGCACCAAGTGGCTGGCGGAAATGCATCACGGACTGGC
CGATGTGCACATAGACAATGAGGCGCCTGATGAGGATCGCACATTCAGCG
AGTGTCAGCTGGAGGGGATTGCGCCGGAGGAGTACAGCGACTACTTCCTG
GCCAAGAGCTACTACGACGTGAGGGAGTACGACAGGGCGGCGCATGCGGT
CAGGAACTGCGAGTCCAGTGTTCCGCGCTTCCTGCACTTCTATTCCAGCT
ACATGGCCAGGGAAAAGCGGCGACTGGACTCGACCACGGACCAGGCGAAT
CTGCACGAACCGAATCAGATGCGCGATCTCGCCGACCTGCTGGCTACGTT
GCGCATGGAATACGGCAAAAGTCGGCTCGATGGCTACGGAATATACTTAT
ACGGAGTAGTCCTGAAAGCACTGAATCTCAACCAGGCCGCCGAGCAAATG
CTGGTCCAGGCCATCAGACTGGTACCCATGCTGTGGAGCGCCTATCTGGA
GCTCTCGCCCCTCATCATGGAGAAGAAGAAACTGCTGAGCCTGCAGCTGG
GTGGTCACTGGATGCGGCACTTCTTCATGGCGCACACTTACCTGGAGCTG
TACCTCAACGACGACGGCCTGAAGATCTACGAGGACCTGCAGGCATCGGG
TTTCAGCAAGAGCATCTACTTGATTGCCCAGATGGCTCTGGTCTATCACA
ATAAGCGGGATGTGGACAAGGCGATTGAGCTGTACCAGGCGCTTCTCGAG
AGCGATCCCTACCGCCTGGACAATGTGGACACCTATTCCAATCTGCTGTT
CGTCAAGGAGATGAAAACCGAAATGGCACAGTTGGCCCACAAGGCTGTCA
GCATCAACAAGTACCGCCCGGAGACGTGTTGTGTAATAGGCAACTACTAC
AGTATCCGCTGTGATCACCAGGTGGCCATTTCCTACTTTCAACGCGCCCT
GAAACTGAATCCCAAGTATCTGGCGGCCTGGACCTTGATGGGACACGAGT
TCATGGAGCTGAAAAACACAAATGCAGCCATACAGAGCTACCGAAAGGCA
GTGGAGGTCAACAAGCGGGACTATCGCGCCTGGTATGGACTGGGCCAGGC
CTACGAGATCATTAAAATGCACTACTACAGCCTGTACTACTTTAAAATCG
CCCACCAACTGCGTCCCTACGACTCTCGAATGCTGGTTGCCTTGGGCGAG
ACCTATGAGAAGCTGGACAAGTGCGAAAATGCTGTGAAGTGCTACTGGAA
GGCCATCGATGTGGGTGACATAGAGGGCATAGCGATGTACAAACTGGCCA
ATCTGCACGAGAAGCTCGGCGACCACGAGACGGCGGTCCATTGCTACATC
ATGTACTGCGAGGATGAGCGGGCGGCCACCGATAAGCAGAGCCTCTACCA
AGGGTTCATCACGCTGGCCAATTATTACGAGAAGAAGGGCGAGTACGAAC
GAGCCGCCTATTACGCTTACAAATGCCTAGACTCAGAGGATCGCAAAATG
GAGGCAAAGGCGCTGCTGAAGACGATTGACTGGAAGCGCAATGCTGAGGG
ACAGAAGAAGGTAAAAACTTCGACGGCCGTGGCGAATGCAGATACCAGTT
CCGAGGACGAGATGGAGTGGGAGCTCCAGGATGTGCGAGTTCGAGTTCCC
ATCACATCCATAGCCACCACGACTACCTCCACGACCACCGTAGCTGCGGA
GAGCGCCTCGAGTAGCTCCCTGATCAGCTTGCGTCCGGACCGAAACCTGA
TTCAGGGCATGCGTCGATCCCAGTCGAGCAGGACTAGCTTAACCGCGCCT
GCCAGCGGCACCACCACCACGCCATCGGCAACTGCTGTCACAATGTCCAC
CGAGGAAACGCCTGGCACATCCGGTGGCCCTTCGAATCCGCCCGAGCAGG
CGCCCTCGGATGATAACAGCTCCATGGAAATATCCAGCGTATCCATCGAT
TAGAAGCTTTCTAGACCAT
BS05017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-RB | 2037 | CG2508-PB | 1..2037 | 17..2053 | 10185 | 100 | Plus |
| Cdc23-RA | 2037 | CG2508-PA | 1..2037 | 17..2053 | 10185 | 100 | Plus |
| CG31687-RB | 1056 | CG31687-PB | 1..1055 | 17..1068 | 5180 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-RB | 2184 | CG2508-RB | 77..2113 | 17..2053 | 10185 | 100 | Plus |
| Cdc23-RA | 2270 | CG2508-RA | 77..2113 | 17..2053 | 10185 | 100 | Plus |
| CG31687-RB | 3653 | CG31687-RB | 77..1131 | 17..1068 | 5180 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20459418..20460391 | 17..990 | 4870 | 100 | Plus |
| 2L | 23513712 | 2L | 20450301..20451277 | 17..990 | 4790 | 99.6 | Plus |
| 2L | 23513712 | 2L | 20460447..20461050 | 988..1591 | 3020 | 100 | Plus |
| 2L | 23513712 | 2L | 20461111..20461572 | 1592..2053 | 2310 | 100 | Plus |
| 2L | 23513712 | 2L | 20451333..20451413 | 988..1068 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib2 | 2844 | transib2 TRANSIB2 2844bp | 1337..1404 | 1056..1123 | 115 | 63.2 | Plus |
BS05017.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:31 Download gff for
BS05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc23-RA | 24..2060 | 17..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:56 Download gff for
BS05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 77..2113 | 17..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:18 Download gff for
BS05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc23-RA | 24..2060 | 17..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:32 Download gff for
BS05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 77..2113 | 17..2053 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:32 Download gff for
BS05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20459418..20460390 | 17..989 | 100 | -> | Plus |
| 2L | 20460449..20461050 | 990..1591 | 100 | -> | Plus |
| 2L | 20461111..20461572 | 1592..2053 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:56 Download gff for
BS05017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20459418..20460390 | 17..989 | 100 | -> | Plus |
| arm_2L | 20460449..20461050 | 990..1591 | 100 | -> | Plus |
| arm_2L | 20461111..20461572 | 1592..2053 | 100 | | Plus |
BS05017.3prime Sequence
928 bp (821 high quality bases) assembled on 2005-12-02
> BS05017.3prime
ATGGTCTAGAAAGCTTCTAATCGATGGATACGCTGGATATTTCCATGGAG
CTGTTATCATCCGAGGGCGCCTGCTCGGGCGGATTCGAAGGGCCACCGGA
TGTGCCAGGCGTTTCCTCGGTGGACATTGTGACAGCAGTTGCCGATGGCG
TGGTGGTGGTGCCGCTGGCAGGCGCGGTTAAGCTAGTCCTGCTCGACTGG
GATCGACGCATGCCCTGAATCAGGTTTCGGTCCGGACGCAAGCTGATCAG
GGAGCTACTCGAGGCGCTCTCCGCAGCTACGGTGGTCGTGGAGGTAGTCG
TGGTGGCTATGGATGTGATGGGAACTCGAACTCGCACATCCTGGAGCTCC
CACTCCATCTCGTCCTCGGAACTGGTATCTGCATTCGCCACGGCCGTCGA
AGTTTTTACCTTCTTCTGTCCCTCAGCATTGCGCTTCCAGTCAATCGTCT
TCAGCAGCGCCTTTGCCTCCATTTTGCGATCCTCTGAGTCTAGGCATTTG
TAAGCGTAATAGGCGGCTCGTTCGTACTCGCCCTTCTTCTCGTAATAATT
GGCCAGCGTGATGAACCCTTGGTAGAGGCTCTGCTTATCGGTGGCCGCCC
GCTCATCCTCGCAGTACATGATGTAGCAATGGACCGCCGTCTCGTGGTCG
CCGAGCTTCTCGTGCAGATTGGCCAGTTTGTACATCGCTATGCCCTCTAT
GTCACCCACATCGATGGCCTTCCAGTAGCACTTCACAGCATTTTCGCACT
TGTCCAGCTTCTCATAGGTCTCGCCCAAGGCAACCAGCATTCGAGAGTCG
TAGGGACGCAGTTGGTGGGCGATTTTAAAGTAGTACAGGCTGTAGTAGTG
CATTTTAATGATCTCGTAGGCCTGGCCCAGTCCATACCANGCGCGATAGT
CCCGCTTGTTGACCTCCACTGCCTTTCG
BS05017.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2508-PA | 2037 | cdc23-RA | 1126..2037 | 928..17 | 4541 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-RB | 2184 | CG2508-RB | 1202..2113 | 928..17 | 4549 | 99.9 | Minus |
| Cdc23-RA | 2270 | CG2508-RA | 1202..2113 | 928..17 | 4549 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20461111..20461572 | 478..17 | 2310 | 100 | Minus |
| 2L | 23513712 | 2L | 20460601..20461050 | 928..479 | 2239 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:13:14 has no hits.
BS05017.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:42 Download gff for
BS05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc23-PA | 1126..2037 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:36 Download gff for
BS05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2508-PA | 1126..2037 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:42:29 Download gff for
BS05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 1202..2113 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:13 Download gff for
BS05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 1202..2113 | 17..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:13 Download gff for
BS05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20460601..20461050 | 479..928 | 99 | -> | Minus |
| 2L | 20461111..20461572 | 17..478 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:42:29 Download gff for
BS05017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20460601..20461050 | 479..928 | 99 | -> | Minus |
| arm_2L | 20461111..20461572 | 17..478 | 100 | | Minus |
BS05017.5prime Sequence
903 bp (816 high quality bases) assembled on 2005-12-02
> BS05017.5prime
GAAGTTATCAGTCGACATGGCGATGCAGAAGTTCTTCAGCGTGCTGCTGC
CGGATGTGAAGCGGGAGCTGCGCCGCGGGATCATCGAGTGCTCCAAGCGG
GGCCTCCTGCACAGCACCAAGTGGCTGGCGGAAATGCATCACGGACTGGC
CGATGTGCACATAGACAATGAGGCGCCTGATGAGGATCGCACATTCAGCG
AGTGTCAGCTGGAGGGGATTGCGCCGGAGGAGTACAGCGACTACTTCCTG
GCCAAGAGCTACTACGACGTGAGGGAGTACGACAGGGCGGCGCATGCGGT
CAGGAACTGCGAGTCCAGTGTTCCGCGCTTCCTGCACTTCTATTCCAGCT
ACATGGCCAGGGAAAAGCGGCGACTGGACTCGACCACGGACCAGGCGAAT
CTGCACGAACCGAATCAGATGCGCGATCTCGCCGACCTGCTGGCTACGTT
GCGCATGGAATACGGCAAAAGTCGGCTCGATGGCTACGGAATATACTTAT
ACGGAGTAGTCCTGAAAGCACTGAATCTCAACCAGGCCGCCGAGCAAATG
CTGGTCCAGGCCATCAGACTGGTACCCATGCTGTGGAGCGCCTATCTGGA
GCTCTCGCCCCTCATCATGGAGAAGAAGAAACTGCTGAGCCTGCAGCTGG
GTGGTCACTGGATGCGGCACTTCTTCATGGCGCACACTTACCTGGAGCTG
TACCTCAACGACGACGGCCTGAAGATCTACGAGGACCTGCAGGCATCGGG
TTTCAGCAAGAGCATCTACTTGATTGCCCAGATGGCTCTGGTCTATCACA
ATAAGCGGGATGTGGACAAGGCGATTGAGCTGTACCAGGCGCTTCTCGAG
AGCGATCCCTACCGCCTGGACNATGTGGACACCTATTCCAATCTGCTGTT
CGT
BS05017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2508-PA | 2037 | cdc23-RA | 1..887 | 17..903 | 4416 | 99.8 | Plus |
| CG31687-PA | 2148 | CG31687-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
| CG31687-PA | 2148 | CG31687-RA | 843..890 | 856..903 | 221 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-RB | 2184 | CG2508-RB | 77..963 | 17..903 | 4424 | 99.9 | Plus |
| Cdc23-RA | 2270 | CG2508-RA | 77..963 | 17..903 | 4424 | 99.9 | Plus |
| CG31687-RB | 3653 | CG31687-RB | 77..966 | 17..903 | 4369 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20459418..20460304 | 17..903 | 4424 | 99.9 | Plus |
| 2L | 23513712 | 2L | 20450301..20451190 | 17..903 | 4344 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:40:07 has no hits.
BS05017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:43 Download gff for
BS05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc23-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:38 Download gff for
BS05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2508-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:40:31 Download gff for
BS05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 77..963 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:08 Download gff for
BS05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc23-RA | 77..963 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:08 Download gff for
BS05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20459418..20460304 | 17..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:40:31 Download gff for
BS05017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20459418..20460304 | 17..903 | 99 | | Plus |
BS05017.pep Sequence
Translation from 16 to 2052
> BS05017.pep
MAMQKFFSVLLPDVKRELRRGIIECSKRGLLHSTKWLAEMHHGLADVHID
NEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYDVREYDRAAHAVRNCES
SVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQMRDLADLLATLRMEYG
KSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLWSAYLELSPLI
MEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYEDLQASGFSKSI
YLIAQMALVYHNKRDVDKAIELYQALLESDPYRLDNVDTYSNLLFVKEMK
TEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISYFQRALKLNPK
YLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAYEIIK
MHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAVKCYWKAIDVG
DIEGIAMYKLANLHEKLGDHETAVHCYIMYCEDERAATDKQSLYQGFITL
ANYYEKKGEYERAAYYAYKCLDSEDRKMEAKALLKTIDWKRNAEGQKKVK
TSTAVANADTSSEDEMEWELQDVRVRVPITSIATTTTSTTTVAAESASSS
SLISLRPDRNLIQGMRRSQSSRTSLTAPASGTTTTPSATAVTMSTEETPG
TSGGPSNPPEQAPSDDNSSMEISSVSID*
BS05017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc23-PB | 678 | CG2508-PB | 1..678 | 1..678 | 3528 | 100 | Plus |
| Cdc23-PA | 678 | CG2508-PA | 1..678 | 1..678 | 3528 | 100 | Plus |
| CG31687-PB | 351 | CG31687-PB | 1..351 | 1..350 | 1809 | 99.4 | Plus |
| CG31687-PC | 351 | CG31687-PC | 1..351 | 1..350 | 1809 | 99.4 | Plus |
| Cdc27-PB | 900 | CG8610-PB | 576..801 | 249..474 | 282 | 25.9 | Plus |
