Clone Sequence Records
BS05023.3prime Sequence
931 bp (894 high quality bases) assembled on 2005-12-02
> BS05023.3prime
ATGGTCTAGAAAGCTTTCAAAGCAGCTCGTAACCACTGATCAAATGCTCA
TCAAGTCGCAACATAGTCTTCAGTCGGCTCACACATCCCTGCAGCAGGCC
CAGAAGAACGCCCAGGACCTTGTTAGGGCGCTCAGGTGACTGGGGTATAG
TTTCGTCCTCGTCGGAGGAGCTTTTCGCAGGTTTAGGTTGTTGAGAGTCG
TCTGTGTTGATAAAGCAAACCTCCGTGCTGTTCGGCGGCTCTGGAGCAGG
TGCCATGCTGGCCTCCAAAGCGGCATCCGCGGCTGCCAGCATGAGAGCCT
CTTGTTCCGCCTCATCTTCAATCAGAACCACAGTGTCCACCTCGGCTAGG
ATGCGAGGGTGCTGAACAGATGGCGCCTCCGAGTCCCGGAACTGAAACAG
TGGATTATCTAGGCTCGATTCTAATTGGGTCTCCTCAACTCGCCGTTTTG
GCTGCACTGCAGCCGGTTCCGAAGAGCTGCCTTTGCGTTTGTTGGTCACA
TTCGGCTTCGAAACGCTGCTCTTTCGCTTTGCGGCCGCCGCTCGTACATC
CTCATCCTGCACTGTCAGATCCTTTTGACAATAATCTTCCGAGAAGCTTA
TATCATCGGGGGATAGCGTGGACATGATCAGCAAGCATTCAATCTCGCCA
TGCTTCTTAATTTTGAGCAGGAAAGGCATGCCCGCTTCGTCGAACTCCAG
GGTCAGCGAAGCATTTAAGCACTCGGCGAAGAGGAGAAATGCTCGGAATT
CCTTAATGCAGAATGTAATGACCGTCTCCTTCGTTACCTGGTACTGCTCA
AATTCACTGGGCTTAAGTTTCAGCTGCGTGCGCATGAACTTATCATTAAC
TCGGGCTCCTTCTATGTAGTTTTTGGCCACCACACTGCCCGAGTTTGCCC
TCAAAGTAAGTTCCTCCTCTGAGGAGTTAAG
BS05023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3945-PA | 1371 | Rad9-RA | 458..1371 | 930..17 | 4520 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-RA | 1779 | CG3945-RA | 527..1440 | 930..17 | 4540 | 99.8 | Minus |
Rad9-RB | 1440 | CG3945-RB | 527..1340 | 930..117 | 4040 | 99.8 | Minus |
Blos3-RA | 564 | CG34255-RA | 346..449 | 17..120 | 520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18870996..18871809 | 117..930 | 4040 | 99.8 | Plus |
3L | 28110227 | 3L | 18870679..18870782 | 17..120 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:19:46 has no hits.
BS05023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:48 Download gff for
BS05023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-PA | 456..1371 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:45 Download gff for
BS05023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3945-PA | 456..1371 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:24:30 Download gff for
BS05023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 525..1447 | 9..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:56 Download gff for
BS05023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 525..1447 | 9..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:56 Download gff for
BS05023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18870675..18870780 | 13..118 | 97 | <- | Plus |
3L | 18870998..18871809 | 119..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:24:30 Download gff for
BS05023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18863775..18863880 | 13..118 | 97 | <- | Plus |
arm_3L | 18864098..18864909 | 119..931 | 99 | | Plus |
BS05023.5prime Sequence
826 bp (825 high quality bases) assembled on 2005-11-29
> BS05023.5prime
GAAGTTATCAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAG
TCATCGCCAAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTC
ATCGAGATCGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCA
ATCCGCAGTGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATG
ACATGCCGCCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGT
TTGGCCGTGTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTT
GCTGGACAACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGA
CCACAAAGGAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACA
AACATTAACACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCT
GTTGACGGATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTT
TGGAGGCAAACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCC
CGAGTTAATGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGA
ATTTGAGCAGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTA
AGGAATTCCGAGCATTTCTCCTCTTCGCCGAGTGCTTAAATGCTTCGCTG
ACCCTGGAGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAA
GCATGGCGAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATG
ATATAAGCTTCTCGGAAGATTATTGT
BS05023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3945-PA | 1371 | Rad9-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-RB | 1440 | CG3945-RB | 70..879 | 17..826 | 4050 | 100 | Plus |
Rad9-RA | 1779 | CG3945-RA | 70..879 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18871457..18871853 | 826..430 | 1985 | 100 | Minus |
3L | 28110227 | 3L | 18872166..18872396 | 279..49 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 18871962..18872115 | 429..276 | 770 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1776..1817 | 368..408 | 108 | 76.2 | Plus |
BS05023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:49 Download gff for
BS05023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:46 Download gff for
BS05023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3945-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:00:00 Download gff for
BS05023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 70..879 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:44 Download gff for
BS05023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 70..879 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:44 Download gff for
BS05023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18872168..18872394 | 51..277 | 100 | <- | Minus |
3L | 18872451..18872484 | 17..50 | 100 | | Minus |
3L | 18871457..18871853 | 430..826 | 100 | <- | Minus |
3L | 18871962..18872113 | 278..429 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:00:00 Download gff for
BS05023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18864557..18864953 | 430..826 | 100 | <- | Minus |
arm_3L | 18865062..18865213 | 278..429 | 100 | <- | Minus |
arm_3L | 18865268..18865494 | 51..277 | 100 | <- | Minus |
arm_3L | 18865551..18865584 | 17..50 | 100 | | Minus |
BS05023.complete Sequence
1403 bp (1403 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635039
> BS05023.complete
GAAGTTATCAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAG
TCATCGCCAAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTC
ATCGAGATCGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCA
ATCCGCAGTGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATG
ACATGCCGCCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGT
TTGGCCGTGTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTT
GCTGGACAACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGA
CCACAAAGGAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACA
AACATTAACACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCT
GTTGACGGATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTT
TGGAGGCAAACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCC
CGAGTTAATGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGA
ATTTGAGCAGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTA
AGGAATTCCGAGCATTTCTCCTCTTCGCCGAGTGCTTAAATGCTTCGCTG
ACCCTGGAGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAA
GCATGGCGAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATG
ATATAAGCTTCTCGGAAGATTATTGTCAAAAGGATCTGACAGTGCAGGAT
GAGGATGTACGAGCGGCGGCCGCAAAGCGAAAGAGCAGCGTTTCGAAGCC
GAATGTGACCAACAAACGCAAAGGCAGCTCTTCGGAACCGGCTGCAGTGC
AGCCAAAACGGCGAGTTGAGGAGACCCAATTAGAATCGAGCCTAGATAAT
CCACTGTTTCAGTTCCGGGACTCGGAGGCGCCATCTGTTCAGCACCCTCG
CATCCTAGCCGAGGTGGACACTGTGGTTCTGATTGAAGATGAGGCGGAAC
AAGAGGCTCTCATGCTGGCAGCCGCGGATGCCGCTTTGGAGGCCAGCATG
GCACCTGCTCCAGAGCCGCCGAACAGCACGGAGGTTTGCTTTATCAACAC
AGACGACTCTCAACAACCTAAACCTGCGAAAAGCTCCTCCGACGAGGACG
AAACTATACCCCAGTCACCTGAGCGCCCTAACAAGGTCCTGGGCGTTCTT
CTGGGCCTGCTGCAGGGATGTGTGAGCCGACTGAAGACTATGTTGCGACT
TGATGAGCATTTGATCAGTGGTTACGAGCTGCTTTGAAAGCTTTCTAGAC
CAT
BS05023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-RA | 1371 | CG3945-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Rad9-RB | 1371 | CG3945-PB | 1..1271 | 17..1287 | 6355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-RA | 1779 | CG3945-RA | 70..1440 | 17..1387 | 6855 | 100 | Plus |
Rad9-RB | 1440 | CG3945-RB | 70..1340 | 17..1287 | 6355 | 100 | Plus |
Blos3-RA | 564 | CG34255-RA | 346..449 | 1387..1284 | 520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18870996..18871853 | 1287..430 | 4290 | 100 | Minus |
3L | 28110227 | 3L | 18872166..18872396 | 279..49 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 18871962..18872115 | 429..276 | 770 | 100 | Minus |
3L | 28110227 | 3L | 18870679..18870782 | 1387..1284 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:34:08 has no hits.
BS05023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:22 Download gff for
BS05023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 1..1371 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:47 Download gff for
BS05023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 60..1437 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:19 Download gff for
BS05023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 70..1439 | 17..1386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:22 Download gff for
BS05023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 60..1437 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:36 Download gff for
BS05023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad9-RA | 70..1439 | 17..1386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:36 Download gff for
BS05023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18870680..18870780 | 1286..1386 | 100 | <- | Minus |
3L | 18870998..18871853 | 430..1285 | 100 | <- | Minus |
3L | 18871962..18872113 | 278..429 | 100 | <- | Minus |
3L | 18872168..18872394 | 51..277 | 100 | <- | Minus |
3L | 18872451..18872484 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:19 Download gff for
BS05023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18863780..18863880 | 1286..1386 | 100 | <- | Minus |
arm_3L | 18864098..18864953 | 430..1285 | 100 | <- | Minus |
arm_3L | 18865062..18865213 | 278..429 | 100 | <- | Minus |
arm_3L | 18865268..18865494 | 51..277 | 100 | <- | Minus |
arm_3L | 18865551..18865584 | 17..50 | 100 | | Minus |
BS05023.pep Sequence
Translation from 16 to 1386
> BS05023.pep
MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGS
ISFKRSMFEVYDMPPHSDFYCKISMKGCLAVFRNMNEVEYCELNLLDNQT
NLQVNLRCKLETTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDIS
NNFNSSEEELTLEANSGSVVAKNYIEGARVNDKFMRTQLKLKPSEFEQYQ
VTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMPFLLKIKKHGEIE
CLLIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKRKSSVSKPNVTNK
RKGSSSEPAAVQPKRRVEETQLESSLDNPLFQFRDSEAPSVQHPRILAEV
DTVVLIEDEAEQEALMLAAADAALEASMAPAPEPPNSTEVCFINTDDSQQ
PKPAKSSSDEDETIPQSPERPNKVLGVLLGLLQGCVSRLKTMLRLDEHLI
SGYELL*
BS05023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad9-PA | 456 | CG3945-PA | 1..456 | 1..456 | 2304 | 100 | Plus |
Rad9-PB | 456 | CG3945-PB | 1..424 | 1..424 | 2146 | 100 | Plus |