Clone BS05023 Report

Search the DGRC for BS05023

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptRad9-RA
Protein status:BS05023.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05023.3prime Sequence

931 bp (894 high quality bases) assembled on 2005-12-02

> BS05023.3prime
ATGGTCTAGAAAGCTTTCAAAGCAGCTCGTAACCACTGATCAAATGCTCA
TCAAGTCGCAACATAGTCTTCAGTCGGCTCACACATCCCTGCAGCAGGCC
CAGAAGAACGCCCAGGACCTTGTTAGGGCGCTCAGGTGACTGGGGTATAG
TTTCGTCCTCGTCGGAGGAGCTTTTCGCAGGTTTAGGTTGTTGAGAGTCG
TCTGTGTTGATAAAGCAAACCTCCGTGCTGTTCGGCGGCTCTGGAGCAGG
TGCCATGCTGGCCTCCAAAGCGGCATCCGCGGCTGCCAGCATGAGAGCCT
CTTGTTCCGCCTCATCTTCAATCAGAACCACAGTGTCCACCTCGGCTAGG
ATGCGAGGGTGCTGAACAGATGGCGCCTCCGAGTCCCGGAACTGAAACAG
TGGATTATCTAGGCTCGATTCTAATTGGGTCTCCTCAACTCGCCGTTTTG
GCTGCACTGCAGCCGGTTCCGAAGAGCTGCCTTTGCGTTTGTTGGTCACA
TTCGGCTTCGAAACGCTGCTCTTTCGCTTTGCGGCCGCCGCTCGTACATC
CTCATCCTGCACTGTCAGATCCTTTTGACAATAATCTTCCGAGAAGCTTA
TATCATCGGGGGATAGCGTGGACATGATCAGCAAGCATTCAATCTCGCCA
TGCTTCTTAATTTTGAGCAGGAAAGGCATGCCCGCTTCGTCGAACTCCAG
GGTCAGCGAAGCATTTAAGCACTCGGCGAAGAGGAGAAATGCTCGGAATT
CCTTAATGCAGAATGTAATGACCGTCTCCTTCGTTACCTGGTACTGCTCA
AATTCACTGGGCTTAAGTTTCAGCTGCGTGCGCATGAACTTATCATTAAC
TCGGGCTCCTTCTATGTAGTTTTTGGCCACCACACTGCCCGAGTTTGCCC
TCAAAGTAAGTTCCTCCTCTGAGGAGTTAAG

BS05023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3945-PA 1371 Rad9-RA 458..1371 930..17 4520 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RA 1779 CG3945-RA 527..1440 930..17 4540 99.8 Minus
Rad9-RB 1440 CG3945-RB 527..1340 930..117 4040 99.8 Minus
Blos3-RA 564 CG34255-RA 346..449 17..120 520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18870996..18871809 117..930 4040 99.8 Plus
3L 28110227 3L 18870679..18870782 17..120 520 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:19:46 has no hits.

BS05023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:48 Download gff for BS05023.3prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-PA 456..1371 17..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:45 Download gff for BS05023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3945-PA 456..1371 17..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:24:30 Download gff for BS05023.3prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 525..1447 9..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:56 Download gff for BS05023.3prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 525..1447 9..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:56 Download gff for BS05023.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18870675..18870780 13..118 97 <- Plus
3L 18870998..18871809 119..931 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:24:30 Download gff for BS05023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18863775..18863880 13..118 97 <- Plus
arm_3L 18864098..18864909 119..931 99   Plus

BS05023.5prime Sequence

826 bp (825 high quality bases) assembled on 2005-11-29

> BS05023.5prime
GAAGTTATCAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAG
TCATCGCCAAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTC
ATCGAGATCGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCA
ATCCGCAGTGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATG
ACATGCCGCCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGT
TTGGCCGTGTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTT
GCTGGACAACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGA
CCACAAAGGAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACA
AACATTAACACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCT
GTTGACGGATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTT
TGGAGGCAAACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCC
CGAGTTAATGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGA
ATTTGAGCAGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTA
AGGAATTCCGAGCATTTCTCCTCTTCGCCGAGTGCTTAAATGCTTCGCTG
ACCCTGGAGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAA
GCATGGCGAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATG
ATATAAGCTTCTCGGAAGATTATTGT

BS05023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3945-PA 1371 Rad9-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RB 1440 CG3945-RB 70..879 17..826 4050 100 Plus
Rad9-RA 1779 CG3945-RA 70..879 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18871457..18871853 826..430 1985 100 Minus
3L 28110227 3L 18872166..18872396 279..49 1155 100 Minus
3L 28110227 3L 18871962..18872115 429..276 770 100 Minus
Blast to na_te.dros performed 2015-02-11 15:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1776..1817 368..408 108 76.2 Plus

BS05023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:49 Download gff for BS05023.5prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:46 Download gff for BS05023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3945-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:00:00 Download gff for BS05023.5prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 70..879 17..826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:44 Download gff for BS05023.5prime
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 70..879 17..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:44 Download gff for BS05023.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18872168..18872394 51..277 100 <- Minus
3L 18872451..18872484 17..50 100   Minus
3L 18871457..18871853 430..826 100 <- Minus
3L 18871962..18872113 278..429 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:00:00 Download gff for BS05023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18864557..18864953 430..826 100 <- Minus
arm_3L 18865062..18865213 278..429 100 <- Minus
arm_3L 18865268..18865494 51..277 100 <- Minus
arm_3L 18865551..18865584 17..50 100   Minus

BS05023.complete Sequence

1403 bp (1403 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635039

> BS05023.complete
GAAGTTATCAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAG
TCATCGCCAAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTC
ATCGAGATCGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCA
ATCCGCAGTGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATG
ACATGCCGCCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGT
TTGGCCGTGTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTT
GCTGGACAACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGA
CCACAAAGGAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACA
AACATTAACACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCT
GTTGACGGATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTT
TGGAGGCAAACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCC
CGAGTTAATGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGA
ATTTGAGCAGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTA
AGGAATTCCGAGCATTTCTCCTCTTCGCCGAGTGCTTAAATGCTTCGCTG
ACCCTGGAGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAA
GCATGGCGAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATG
ATATAAGCTTCTCGGAAGATTATTGTCAAAAGGATCTGACAGTGCAGGAT
GAGGATGTACGAGCGGCGGCCGCAAAGCGAAAGAGCAGCGTTTCGAAGCC
GAATGTGACCAACAAACGCAAAGGCAGCTCTTCGGAACCGGCTGCAGTGC
AGCCAAAACGGCGAGTTGAGGAGACCCAATTAGAATCGAGCCTAGATAAT
CCACTGTTTCAGTTCCGGGACTCGGAGGCGCCATCTGTTCAGCACCCTCG
CATCCTAGCCGAGGTGGACACTGTGGTTCTGATTGAAGATGAGGCGGAAC
AAGAGGCTCTCATGCTGGCAGCCGCGGATGCCGCTTTGGAGGCCAGCATG
GCACCTGCTCCAGAGCCGCCGAACAGCACGGAGGTTTGCTTTATCAACAC
AGACGACTCTCAACAACCTAAACCTGCGAAAAGCTCCTCCGACGAGGACG
AAACTATACCCCAGTCACCTGAGCGCCCTAACAAGGTCCTGGGCGTTCTT
CTGGGCCTGCTGCAGGGATGTGTGAGCCGACTGAAGACTATGTTGCGACT
TGATGAGCATTTGATCAGTGGTTACGAGCTGCTTTGAAAGCTTTCTAGAC
CAT

BS05023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RA 1371 CG3945-PA 1..1371 17..1387 6855 100 Plus
Rad9-RB 1371 CG3945-PB 1..1271 17..1287 6355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-RA 1779 CG3945-RA 70..1440 17..1387 6855 100 Plus
Rad9-RB 1440 CG3945-RB 70..1340 17..1287 6355 100 Plus
Blos3-RA 564 CG34255-RA 346..449 1387..1284 520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18870996..18871853 1287..430 4290 100 Minus
3L 28110227 3L 18872166..18872396 279..49 1155 100 Minus
3L 28110227 3L 18871962..18872115 429..276 770 100 Minus
3L 28110227 3L 18870679..18870782 1387..1284 520 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:34:08 has no hits.

BS05023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:22 Download gff for BS05023.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 1..1371 17..1387 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:47 Download gff for BS05023.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 60..1437 17..1395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:19 Download gff for BS05023.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 70..1439 17..1386 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:22 Download gff for BS05023.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 60..1437 17..1395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:36 Download gff for BS05023.complete
Subject Subject Range Query Range Percent Splice Strand
Rad9-RA 70..1439 17..1386 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:36 Download gff for BS05023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18870680..18870780 1286..1386 100 <- Minus
3L 18870998..18871853 430..1285 100 <- Minus
3L 18871962..18872113 278..429 100 <- Minus
3L 18872168..18872394 51..277 100 <- Minus
3L 18872451..18872484 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:19 Download gff for BS05023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18863780..18863880 1286..1386 100 <- Minus
arm_3L 18864098..18864953 430..1285 100 <- Minus
arm_3L 18865062..18865213 278..429 100 <- Minus
arm_3L 18865268..18865494 51..277 100 <- Minus
arm_3L 18865551..18865584 17..50 100   Minus

BS05023.pep Sequence

Translation from 16 to 1386

> BS05023.pep
MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGS
ISFKRSMFEVYDMPPHSDFYCKISMKGCLAVFRNMNEVEYCELNLLDNQT
NLQVNLRCKLETTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDIS
NNFNSSEEELTLEANSGSVVAKNYIEGARVNDKFMRTQLKLKPSEFEQYQ
VTKETVITFCIKEFRAFLLFAECLNASLTLEFDEAGMPFLLKIKKHGEIE
CLLIMSTLSPDDISFSEDYCQKDLTVQDEDVRAAAAKRKSSVSKPNVTNK
RKGSSSEPAAVQPKRRVEETQLESSLDNPLFQFRDSEAPSVQHPRILAEV
DTVVLIEDEAEQEALMLAAADAALEASMAPAPEPPNSTEVCFINTDDSQQ
PKPAKSSSDEDETIPQSPERPNKVLGVLLGLLQGCVSRLKTMLRLDEHLI
SGYELL*

BS05023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rad9-PA 456 CG3945-PA 1..456 1..456 2304 100 Plus
Rad9-PB 456 CG3945-PB 1..424 1..424 2146 100 Plus