Clone BS05024 Report

Search the DGRC for BS05024

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptDek-RB
Protein status:BS05024.pep: full length peptide match
Sequenced Size:2042

Clone Sequence Records

BS05024.3prime Sequence

902 bp (742 high quality bases) assembled on 2005-12-02

> BS05024.3prime
ATGGTCTAGAAAGCTTTTATGTCGCAATTAACGCTTTCACTGTCGCCTTG
ATGAAGTCTTTCTTGTCTGTTAGGTCAAAGTCTGGATATTTTGCATAAAC
TTGTTTGCACACGGTTTTCATCGTAATCTCCTCAAGATTGGCTTTATCCA
GAATCTCTTTGACATATCCGCGTATTTGTTCATCCGTTGGGAATGCCTGT
TTGCCCTTTTTGGTTAGTGGCTCATCCTCGTCGGATTCATCTTTGTCATC
GACATCATCATCTTCCTCGGACGATTCCTTCTTTGATTTTTTCGATCGAC
TATCGGCCTTTCCAGCTGGTTTTGACTTGTTGTTAGCTTTGCTATTTTTC
GCAGGCGTAATGGGCTTCTTGCTCTTTTTGGGACGTTCCTCTTCGCTTTG
ATCGCTGGCAAAATCGGAGACATCCTCCTCCTCTTCATCCTCGGATACCT
CCTCATCTTCGCTATCTGAATCTTTACGCTTGCGGGAAGCTGCACCTCGT
CCTCTACCCCTTCGTCCAGCTGACGCAGGAGCTGCCGGTCGTCCACGTTT
ACCCACGGAACCACGTTTACGTTTTGGGACATCACTATCGGCATCGGAAA
CTTCCGATTCCTCTTCTTCCTCGGAATCAGAGTTTCTTCTGCGACTTTTG
CGCGCAGGACGACCGCGTCCACCGCGGCTTGGGACTTTGCGACCTGCTGC
ACCAGCACCACCACCACGACCACCGTCAGAGTCGGAATTGGCAGAAGGAT
TGTAATCTGAGCCCGACTCGGAGTCATCATTTCGTCTCCTTTTGGGAAAC
TGCACTTTCTGCTCGCTATCGTCAGAGCTGGAGAAATCTACATAGGCGGA
CATTTTCTTTCCTGCCGTCGCGCGCCTTGGACGTCCGGTGGAATTGCGTG
CA

BS05024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5935-PB 2010 Dek-RB 1229..2010 798..17 3910 100 Minus
CG5935-PA 1992 Dek-RA 1211..1992 798..17 3910 100 Minus
CG5935-PC 2004 Dek-RC 1223..2004 798..17 3910 100 Minus
CG5935-PD 1839 Dek-RD 1211..1825 798..184 3075 100 Minus
CG5935-PB 2010 Dek-RB 1125..1223 902..804 495 100 Minus
CG5935-PA 1992 Dek-RA 1107..1205 902..804 495 100 Minus
CG5935-PC 2004 Dek-RC 1119..1217 902..804 495 100 Minus
CG5935-PD 1839 Dek-RD 1107..1205 902..804 495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-RE 3947 CG5935-RE 1188..2075 902..15 4395 99.8 Minus
Dek-RC 2579 CG5935-RC 1200..2087 902..15 4395 99.8 Minus
Dek-RA 2567 CG5935-RA 1188..2075 902..15 4395 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16859061..16859250 580..391 950 100 Minus
2R 25286936 2R 16858827..16859002 754..579 880 100 Minus
2R 25286936 2R 16859632..16859789 185..28 775 99.4 Minus
2R 25286936 2R 16859452..16859575 307..184 620 100 Minus
2R 25286936 2R 16858664..16858764 855..755 430 95 Minus
2R 25286936 2R 16859313..16859397 391..307 425 100 Minus
2R 25286936 2R 16858555..16858601 902..856 235 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:15:54 has no hits.

BS05024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:51 Download gff for BS05024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5935-PA 1108..1992 17..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:47 Download gff for BS05024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5935-PC 1120..2004 17..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:51 Download gff for BS05024.3prime
Subject Subject Range Query Range Percent Splice Strand
Dek-RA 1189..2075 15..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:02 Download gff for BS05024.3prime
Subject Subject Range Query Range Percent Splice Strand
Dek-RA 1189..2075 15..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:02 Download gff for BS05024.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16859453..16859574 185..306 100 -> Minus
2R 16859633..16859785 32..184 100 -> Minus
2R 16859850..16859866 15..31 100   Minus
2R 16858556..16858601 856..901 100 -> Minus
2R 16858664..16858764 755..855 98 -> Minus
2R 16858827..16859000 581..754 100 -> Minus
2R 16859061..16859249 392..580 100 -> Minus
2R 16859313..16859397 307..391 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:51 Download gff for BS05024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12746566..12746754 392..580 100 -> Minus
arm_2R 12746818..12746902 307..391 100 -> Minus
arm_2R 12746958..12747079 185..306 100 -> Minus
arm_2R 12747138..12747290 32..184 100 -> Minus
arm_2R 12747355..12747371 15..31 100   Minus
arm_2R 12746061..12746106 856..901 100 -> Minus
arm_2R 12746169..12746269 755..855 98 -> Minus
arm_2R 12746332..12746505 581..754 100 -> Minus

BS05024.5prime Sequence

836 bp (761 high quality bases) assembled on 2005-12-02

> BS05024.5prime
GAAGTTATCAGTCGACATGCCATCGCCGCACGAAAAGGATGCTAACAAAG
CGGCAGAAACGGCAGCCAAAGAAAATGCCGCCGATAAGGTAAGCGATGTG
GAAAATGCATCGGTTACTGCGGGGGTGGCGAAAGCCGTGGGGGCACAGCC
GGAAAGGGGCTCCAAAGATGCAGCCGAATCCCCCGCCGCTGTCGACGCCT
CTGCCTCTGCCGCCACTGATGACGTCGCTGATAAAAAAGCCAAAGGAGAC
TCAACGGCTGTTTCAAATACCGAATCGGATGCAGCTGCAGCGGACAAAAA
GGAGAAATCCCCCTCGCCGGTAATAAAGAAGTCCAACAATAAGGATGCTA
AAAAGGAGGACAACTCCGAAAAGGACGAGGAGAACTCGGAAGACGGCGAT
GAGCCAGAAGATGAGGCTGATGAGAAAGCTAGCGATGAAGAGAGCGAGAA
GAAGAAACCGAAATTAGATGCAGAGGACAAGATAAAGGATGCCACTGATG
AGTCCAAGCCAAAATCGGGAGCCGATAAGCCCAAGAAACCTGAGCCCAAG
GCCAAGAATGGCAAGGTGGCTAAGGAGGAGGACGACGACGAAGAGGACGA
GGATGATGAGGATGCCGAAGATGACGATGGAGACGAGAACGATGGCCTGG
ACAAGAACAACGAGGTGGCCGAGGATGATGAGAATGTCGTCGCTCTCGCC
GAGATTGATCGCATTAATGAGAATATCAACAAGACTCGTGTAGATGGTCT
GCAAACATTGCATGGCATCTGCTTTGGCGCCCAAGGCAAGAACAATGTGG
TCAAGAAGAACTTGCGATCCTTTGCCGGTTTCGAGT

BS05024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5935-PB 2010 Dek-RB 1..820 17..836 4050 99.7 Plus
CG5935-PC 2004 Dek-RC 11..814 33..836 3970 99.7 Plus
CG5935-PA 1992 Dek-RA 3..802 37..836 3950 99.7 Plus
CG5935-PD 1839 Dek-RD 3..802 37..836 3950 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-RB 2559 CG5935-RB 143..963 16..836 4075 99.8 Plus
Dek-RC 2579 CG5935-RC 92..895 33..836 3990 99.8 Plus
Dek-RE 3947 CG5935-RE 84..883 37..836 3970 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16857631..16858112 283..764 2410 100 Plus
2R 25286936 2R 16856784..16857052 16..284 1345 100 Plus
2R 25286936 2R 16858181..16858250 767..836 350 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:55:15 has no hits.

BS05024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:52 Download gff for BS05024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5935-PB 1..820 17..836 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:49 Download gff for BS05024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5935-PB 1..820 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:43:07 Download gff for BS05024.5prime
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 135..963 6..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:21 Download gff for BS05024.5prime
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 135..963 6..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:21 Download gff for BS05024.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16856776..16857052 6..284 98 -> Plus
2R 16857633..16858114 285..766 99 -> Plus
2R 16858181..16858250 767..836 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:43:07 Download gff for BS05024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12744281..12744557 6..284 98 -> Plus
arm_2R 12745138..12745619 285..766 99 -> Plus
arm_2R 12745686..12745755 767..836 100   Plus

BS05024.complete Sequence

2042 bp assembled on 2008-08-15

GenBank Submission: KX796961

> BS05024.complete
GAAGTTATCAGTCGACATGCCATCGCCGCACGAAAAGGATGCTAACAAAG
CGGCAGAAACGGCAGCCAAAGAAAATGCCGCCGATAAGGTAAGCGATGTG
GAAAATGCATCGGTTACTGCGGGGGTGGCGAAAGCCGTGGGGGCACAGCC
GGAAAGGGGCTCCAAAGATGCAGCCGAATCCCCCGCCGCTGTCGACGCCT
CTGCCTCTGCCGCCACTGATGACGTCGCTGATAAAAAAGCCAAAGGAGAC
TCAACGGCTGTTTCAAATACCGAATCGGATGCAGCTGCAGCGGACAAAAA
GGAGAAATCCCCCTCGCCGGTAATAAAGAAGTCCAACAATAAGGATGCTA
AAAAGGAGGACAACTCCGAAAAGGACGAGGAGAACTCGGAAGACGGCGAT
GAGCCAGAAGATGAGGCTGATGAGAAAGCTAGCGATGAAGAGAGCGAGAA
GAAGAAACCGAAATTAGATGCAGAGGACAAGATAAAGGATGCCACTGATG
AGTCCAAGCCAAAATCGGGAGCCGATAAGCCCAAGAAACCTGAGCCCAAG
GCCAAGAATGGCAAGGTGGCTAAGGAGGAGGACGACGACGAAGAGGACGA
GGATGATGAGGATGCCGAAGATGACGATGGAGACGAGAACGATGGCCTGG
ACAAGAACAACGAGGTGGCCGAGGATGATGAGAATGTCGTCGCTCTCGCC
GAGATTGATCGCATTAATGAGAATATCAACAAGACTCGTGTAGATGGTCT
GCAAACATTGCATGCAATCTGCTTTGGCGCCCAAGGCAAGAACAATGTGG
TCAAGAAGAACTTGCGATCCTTTGCCGGTTTCGAGTTTGCCAAGGATTCA
GCGGAGTACAACAAAAAGCTGGAGGCCATCAAAAAGGTGGATAATAAGGG
CCTGCGCAGCATCTGCGAGATCCTTACCCTCGATCGCAAGGGCAGCAAGA
ACGAGACTGTCCTTCGAGTGCTCAAATTCCTAATGGAACCGGACGAGTCG
CTTTGCTTGGAGCAGGGTGATGAGGAGGAGGAGGAAGATGCCGAGGACGA
GGATCTGGATGAAGATGAGGAGGACCCGCCCAGTGAAGAGGACAAGAAGC
GCAAGAGCGGAAAGTCTAGCGGCGGCGCTGGCAGAGGCTCTGCACGCAAT
TCCACCGGACGTCCAAGGCGCGCGACGGCAGGAAAGAAAATGTCCGCCTA
TGTAGATTTCTCCAGCTCTGACGATAGCGAGCAGAAAGTTGCAGTTCCCA
AAAGGAGACGAAATGATGACTCCGAGTCGGGCTCAGATTACAATCCTTCT
GCCAATTCCGACTCTGACGGTGGTCGTGGTGGTGGTGCTGGTGCAGCAGG
TCGCAAAGTCCCAAGCCGCGGTGGACGCGGTCGTCCTGCGCGCAAAAGTC
GCAGAAGAAACTCTGATTCCGAGGAAGAAGAGGAATCGGAAGTTTCCGAT
GCCGATAGTGATGTCCCAAAACGTAAACGTGGTTCCGTGGGTAAACGTGG
ACGACCGGCAGCTCCTGCGTCAGCTGGACGAAGGGGTAGAGGACGAGGTG
CAGCTTCCCGCAAGCGTAAAGATTCAGATAGCGAAGATGAGGAGGTATCC
GAGGATGAAGAGGAGGAGGATGTCTCCGATTTTGCCAGCGATCAAAGCGA
AGAGGAACGTCCCAAAAAGAGCAAGAAGCCCATTACGCCTGCGAAAAATA
GCAAAGCTAACAACAAGTCAAAACCAGCTGGAAAGGCCGATAGTCGATCG
AAAAAATCAAAGAAGGAATCGTCCGAGGAAGATGATGATGTCGATGACAA
AGATGAATCCGACGAGGATGAGCCACTAACCAAAAAGGGCAAACAGGCAT
TCCCAACGGATGAACAAATACGCGGATATGTCAAAGAGATTCTGGATAAA
GCCAATCTTGAGGAGATTACGATGAAAACCGTGTGCAAACAAGTTTATGC
AAAATATCCAGACTTTGACCTAACAGACAAGAAAGACTTCATCAAGGCGA
CAGTGAAAGCGTTAATTGCGACATAAAAGCTTTCTAGACCAT

BS05024.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-RB 2010 CG5935-PB 1..2010 17..2026 10050 100 Plus
Dek-RC 2004 CG5935-PC 11..2004 33..2026 9970 100 Plus
Dek-RE 1992 CG5935-PE 3..1992 37..2026 9950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-RB 2559 CG5935-RB 143..2155 16..2028 10065 100 Plus
Dek-RC 2579 CG5935-RC 92..2087 33..2028 9980 100 Plus
Dek-RE 3947 CG5935-RE 84..2075 37..2028 9960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16857631..16858114 283..766 2420 100 Plus
2R 25286936 2R 16858181..16858601 767..1187 2105 100 Plus
2R 25286936 2R 16856784..16857052 16..284 1345 100 Plus
2R 25286936 2R 16859061..16859250 1463..1652 950 100 Plus
2R 25286936 2R 16858827..16859002 1289..1464 880 100 Plus
2R 25286936 2R 16859632..16859789 1858..2015 775 99.4 Plus
2R 25286936 2R 16859452..16859575 1736..1859 620 100 Plus
2R 25286936 2R 16858664..16858764 1188..1288 505 100 Plus
2R 25286936 2R 16859313..16859397 1652..1736 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:34:46 has no hits.

BS05024.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:27:06 Download gff for BS05024.complete
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 153..2173 6..2028 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:24 Download gff for BS05024.complete
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 144..2151 17..2024 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:19 Download gff for BS05024.complete
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 162..2169 17..2024 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:18 Download gff for BS05024.complete
Subject Subject Range Query Range Percent Splice Strand
Dek-RB 144..2151 17..2024 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:18 Download gff for BS05024.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16859633..16859785 1859..2011 100 -> Plus
2R 16856785..16857052 17..284 100 -> Plus
2R 16857633..16858114 285..766 100 -> Plus
2R 16858181..16858601 767..1187 100 -> Plus
2R 16858664..16858764 1188..1288 100 -> Plus
2R 16858827..16859000 1289..1462 100 -> Plus
2R 16859061..16859249 1463..1651 100 -> Plus
2R 16859313..16859397 1652..1736 100 -> Plus
2R 16859453..16859574 1737..1858 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:24 Download gff for BS05024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12744290..12744557 17..284 100 -> Plus
arm_2R 12745138..12745619 285..766 100 -> Plus
arm_2R 12745686..12746106 767..1187 100 -> Plus
arm_2R 12746169..12746269 1188..1288 100 -> Plus
arm_2R 12746332..12746505 1289..1462 100 -> Plus
arm_2R 12746566..12746754 1463..1651 100 -> Plus
arm_2R 12746818..12746902 1652..1736 100 -> Plus
arm_2R 12746958..12747079 1737..1858 100 -> Plus
arm_2R 12747138..12747290 1859..2011 100 -> Plus

BS05024.pep Sequence

Translation from 16 to 2025

> BS05024.pep
MPSPHEKDANKAAETAAKENAADKVSDVENASVTAGVAKAVGAQPERGSK
DAAESPAAVDASASAATDDVADKKAKGDSTAVSNTESDAAAADKKEKSPS
PVIKKSNNKDAKKEDNSEKDEENSEDGDEPEDEADEKASDEESEKKKPKL
DAEDKIKDATDESKPKSGADKPKKPEPKAKNGKVAKEEDDDEEDEDDEDA
EDDDGDENDGLDKNNEVAEDDENVVALAEIDRINENINKTRVDGLQTLHA
ICFGAQGKNNVVKKNLRSFAGFEFAKDSAEYNKKLEAIKKVDNKGLRSIC
EILTLDRKGSKNETVLRVLKFLMEPDESLCLEQGDEEEEEDAEDEDLDED
EEDPPSEEDKKRKSGKSSGGAGRGSARNSTGRPRRATAGKKMSAYVDFSS
SDDSEQKVAVPKRRRNDDSESGSDYNPSANSDSDGGRGGGAGAAGRKVPS
RGGRGRPARKSRRRNSDSEEEEESEVSDADSDVPKRKRGSVGKRGRPAAP
ASAGRRGRGRGAASRKRKDSDSEDEEVSEDEEEEDVSDFASDQSEEERPK
KSKKPITPAKNSKANNKSKPAGKADSRSKKSKKESSEEDDDVDDKDESDE
DEPLTKKGKQAFPTDEQIRGYVKEILDKANLEEITMKTVCKQVYAKYPDF
DLTDKKDFIKATVKALIAT*

BS05024.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dek-PB 669 CG5935-PB 1..669 1..669 3401 100 Plus
Dek-PC 667 CG5935-PC 4..667 6..669 3366 99.8 Plus
Dek-PE 663 CG5935-PE 2..663 8..669 3360 100 Plus
Dek-PA 663 CG5935-PA 2..663 8..669 3360 100 Plus
Dek-PD 612 CG5935-PD 2..608 8..614 3081 100 Plus