Clone BS05027 Report

Search the DGRC for BS05027

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:27
Vector:pDNR-Dual
Associated Gene/Transcriptisopeptidase-T-3-RA
Protein status:BS05027.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05027.3prime Sequence

773 bp (772 high quality bases) assembled on 2005-09-08

> BS05027.3prime
TCCCATTAAAAGGNGNGNNAAANGAATGGTNTAGAAAGNTTTNACCCTTG
GATGGTATAGAAGTGATTGATGNNAAGNATATGGTTGTGNTNATGGTAGT
TTTGAAGGATATGTGTGATGATTGAGGTTGTGTNGTTGTNGNNATGNNAT
ANGTGTATGGGATGTTTGTTTTNNAGGATGNNNAGAAATGNNAAAAAAGT
NTTTGGATTGNTTAGGGTNATNTGGANTTGTGGNATTTNTAGGATNANTT
TTAGGATGGGNGAATNGGGTGTNAAGNNTTNANGNAGTTNAATAAAGATA
GAGGATTGATTGTNGGANAAGNATTGGGANGNGGAANGTTTGTTGTTGTT
AGTTTTNTTNAGTGGNGNGAGNANTGGNGTATGGTNGAAGNAAATTTNTG
TAAGNGATTNGANAATGTNATNGGTGGGAGGGGAATNANGGTGGNTGTAG
ATTNGTANAATNTNAATNAAGGGAGNAGTGTTTTGAATGGTTTAATTATT
GGTGAGAATNGTGGAGGGTGAGATGGAAGATAGANTGTGNTGNATATTNA
TGNNNGGNGGTTNNTGTGGATTTTNNTNGTTTTGGTTNTGTATTAGNNAN
TTNATNGTGGTNGAGTAAATGGNATTGTGTGNTTTTAAGGGAAATGGGGA
TAGATTNNGNTTGAAGNNNATGTNNANGAGGNATTGNAGNGTATNTGNTT
GGTGATTTTGGAGATTGATNAAATGTTGNTTTAGAATAGTTATTAGGGGT
GGAGNATAAGGGGNAGTTTNTAT

BS05027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11025-PA 1674 isopeptidase-T-3-RA 1164..1291 552..425 249 85.1 Minus
CG11025-PB 1308 isopeptidase-T-3-RB 798..925 552..425 249 85.1 Minus
CG11025-PA 1674 isopeptidase-T-3-RA 1577..1623 139..93 141 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RC 2491 CG11025-RC 1103..1810 762..55 1403 75.8 Minus
isopeptidase-T-3-RB 1778 CG11025-RB 692..1399 762..55 1403 75.8 Minus
isopeptidase-T-3-RA 2479 CG11025-RA 1091..1798 762..55 1403 75.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19671974..19672241 762..495 645 78.7 Minus
2R 25286936 2R 19672295..19672595 493..193 497 73.4 Minus
2R 25286936 2R 19672712..19672796 139..55 239 83.5 Minus
Blast to na_te.dros performed on 2015-02-12 18:57:05 has no hits.

BS05027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 13:26:55 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-31 04:23:47 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 20:25:56 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-12 20:25:56 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-31 04:23:47 has no hits.

BS05027.5prime Sequence

823 bp (713 high quality bases) assembled on 2005-12-02

> BS05027.5prime
GAAGTTATCAGTCGACATGATACCCTGGATGCGGGAGAAGTTCAACGAGA
AACGGGCCAAGTGGTTGGCGCGTAGCAAGCGCAGCGGTGGTTCTCCGGCT
GACGAAAGCCCTCGGAGCAGCAGTCATAGCCACAGCCAGCGGACAGACGC
CAGCGATGCGGAGAGCCTGAGCGGATCCTCGTTGAATGTCCACACGGCGG
AATCTGAAACGCAGACGGATGGCGGGATATCCGCTTCCAATTCGCGGCCC
CTTGTGGGCGGGGGCAGTTGCGTCCTAAGGACTCCATCGCCCGCTCGCCG
ACGTCGCATTCACCTTGAGCTACAGCTGCAGCGACGAGAGGAACGTGCTG
AGCATCAGAAGGTGGTGCCACAGGACTCGCCCACGCCCACTCACCAACAG
CAGGCTAATGCGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTACTTC
TGGCGAGGCAGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGG
TAATCTGCCCCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAATAAG
CGCCTAAACGAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACGATCC
CGACTCCATCCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCGCGAT
ACCGTCTCTATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGGCGAC
ACGCTGGCCCAGCTAANAGTTCGCAACAATGAGACTTTCATACTCTCCCC
ACGACCCAATACTCTGCCGCAGACTGTTTCACGGATACGTGAAGTTCCTG
GCCCAAATGAGCAGCTGGTGGAG

BS05027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11025-PA 1674 isopeptidase-T-3-RA 1..807 17..823 3966 99.6 Plus
CG11025-PB 1308 isopeptidase-T-3-RB 30..441 412..823 1991 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RA 2479 CG11025-RA 138..944 17..823 3994 99.6 Plus
isopeptidase-T-3-RC 2491 CG11025-RC 138..956 17..823 3864 98.2 Plus
isopeptidase-T-3-RB 1778 CG11025-RB 134..545 412..823 2019 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19671361..19671772 412..823 2019 99.3 Plus
2R 25286936 2R 19670755..19671150 17..412 1980 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:20:19 has no hits.

BS05027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:57 Download gff for BS05027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11025-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:57 Download gff for BS05027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11025-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:59:34 Download gff for BS05027.5prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 138..944 17..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:43:27 Download gff for BS05027.5prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 138..944 17..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:43:27 Download gff for BS05027.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19670755..19671149 17..411 100 -> Plus
2R 19671361..19671772 412..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:59:34 Download gff for BS05027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15558260..15558654 17..411 100 -> Plus
arm_2R 15558866..15559277 412..823 99   Plus

BS05027.complete Sequence

1706 bp assembled on 2008-01-02

GenBank Submission: FJ635041

> BS05027.complete
GAAGTTATCAGTCGACATGATACCCTGGATGCGGGAGAAGTTCAACGAGA
AACGGGCCAAGTGGTTGGCGCGTAGCAAGCGCAGCGGTGGTTCTCCGGCT
GACGAAAGCCCTCGGAGCAGCAGTCATAGCCACAGCCAGCGGACAGACGC
CAGCGATGCGGAGAGCCTGAGCGGATCCTCGTTGAATGTCCACACGGCGG
AATCTGAAACGCAGACGGATGGCGGGATATCCGCTTCCAATTCGCGGCCC
CTTGTGGGCGGGGGCAGTTGCGTCCTAAGGACTCCATCGCCCGCTCGCCG
ACGTCGCATTCACCTTGAGCTACAGCTGCAGCGACGAGAGGAACGTGCTG
AGCATCAGAAGGTGGTGCCACAGGACTCGCCCACGCCCACTCACCAACAG
CAGGCTAATGCGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTACTTC
TGGCGAGGCAGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGG
TAATCTGCCCCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAATAAG
CGCCTAAACGAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACGATCC
CGACTCCATCCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCGCGAT
ACCGTCTCTATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGGCGAC
ACGCTGGCCCAGCTAAAAGTTCGCAACAATGAGACTTTCATACTCTCCCC
ACGACGCAATACTCTGCCGCAGACTGTTTCACGGATACGTGAGGTTCCTG
GCCCAAATGAGCAGCTGGTGGAGAGCGCCACCCGATACGTGCCCGTCAAT
TGCAACCAGCTGCCCACCATCGATATTAATGAAATCTTTCAGCAGTCGAA
TATCCAATACGATGTGCGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTG
CGGCGGTTATAGGAGCTGGCCCTTATGCTCCACGCCTGATAGCTATGCTA
AAGCAACGTTTGATCAATCGCCGAAATCAGCAAGCGGATACGCTGCAATG
CCTCGTGGACATGGGCTTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAG
CACACAATGGCATTTACTCGACCACGATGGAGTGGCTAATACAGAACCAA
AACGAGGAAAATCCACAGGAACCGCCGGGCATGAATATGCAGCACAGTCT
ATCTTCCATCTCACCCTCCACGATTGTCACCAATAATGAAACCATTGAAA
ACACTGCTGCCTTGATTGAGATTGTACGAATCTACAGCCACCGGGATTCC
CCTCCCAGCGATGAGATTGTGGAATCGCTTACAGAAATGGGCTTCGAGGA
GACGGCAGTGCTCGCGGCACTGAAGAAAACTGGCAACAACAAGGCGTCCG
CGTGCGAATGGTTGTGCGACAATCGATCGGGTAGCGTTATTGAACTGCGT
GAAGGCTTGGCGCCCGATTCGCCCATCCTAAAGGTGATCCTGGAAATGCC
ACAAGTCCAGATGACCCTAAGCAATCCAAAGACTTTTTTGGCATTTCTGG
GCATCCTGGAAAACGAACATGCGATACGCGTGTGGCGTGGCGACAACGAC
ACAACCTCGGTCATCACACATATCCTTCAAAAGTACCATGAGGAGAAGCA
TGTGCTTGGCATCAATCAGTTCTATACGAACCGCTGGTGAAAGCTTTCTA
GACCAT

BS05027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RA 1674 CG11025-PA 1..1674 17..1690 8370 100 Plus
isopeptidase-T-3-RC 1686 CG11025-PC 1..1686 17..1690 8215 99.3 Plus
isopeptidase-T-3-RB 1308 CG11025-PB 30..1308 412..1690 6395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RA 2479 CG11025-RA 138..1814 17..1693 8385 100 Plus
isopeptidase-T-3-RC 2491 CG11025-RC 138..1826 17..1693 8230 99.3 Plus
isopeptidase-T-3-RB 1778 CG11025-RB 134..1415 412..1693 6410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19671361..19671850 412..901 2450 100 Plus
2R 25286936 2R 19670755..19671150 17..412 1980 100 Plus
2R 25286936 2R 19671906..19672242 902..1238 1685 100 Plus
2R 25286936 2R 19672294..19672597 1238..1541 1520 100 Plus
2R 25286936 2R 19672660..19672812 1541..1693 765 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:19:32 has no hits.

BS05027.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:26 Download gff for BS05027.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 1..1674 17..1690 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:20 Download gff for BS05027.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 137..1809 17..1689 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:00 Download gff for BS05027.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 138..1810 17..1689 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:27 Download gff for BS05027.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 137..1813 17..1693 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:27 Download gff for BS05027.complete
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RA 138..1810 17..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:27 Download gff for BS05027.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19670755..19671149 17..411 100 -> Plus
2R 19671361..19671850 412..901 100 -> Plus
2R 19671906..19672241 902..1237 100 -> Plus
2R 19672294..19672597 1238..1541 100 -> Plus
2R 19672661..19672808 1542..1689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:00 Download gff for BS05027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15558260..15558654 17..411 100 -> Plus
arm_2R 15558866..15559355 412..901 100 -> Plus
arm_2R 15559411..15559746 902..1237 100 -> Plus
arm_2R 15559799..15560102 1238..1541 100 -> Plus
arm_2R 15560166..15560313 1542..1689 100   Plus

BS05027.pep Sequence

Translation from 16 to 1689

> BS05027.pep
MIPWMREKFNEKRAKWLARSKRSGGSPADESPRSSSHSHSQRTDASDAES
LSGSSLNVHTAESETQTDGGISASNSRPLVGGGSCVLRTPSPARRRRIHL
ELQLQRREERAEHQKVVPQDSPTPTHQQQANAKSAHTNRPGSSTSGEADD
ASRPGESILVRVICPSSRVLIFKTDVNKRLNELKSEVILELSDDPDSIQL
FAPDVRHLNPRYRLYRAEYFGGELNEGDTLAQLKVRNNETFILSPRRNTL
PQTVSRIREVPGPNEQLVESATRYVPVNCNQLPTIDINEIFQQSNIQYDV
RKVLISLAQASAAVIGAGPYAPRLIAMLKQRLINRRNQQADTLQCLVDMG
FKRELAAFALKAHNGIYSTTMEWLIQNQNEENPQEPPGMNMQHSLSSISP
STIVTNNETIENTAALIEIVRIYSHRDSPPSDEIVESLTEMGFEETAVLA
ALKKTGNNKASACEWLCDNRSGSVIELREGLAPDSPILKVILEMPQVQMT
LSNPKTFLAFLGILENEHAIRVWRGDNDTTSVITHILQKYHEEKHVLGIN
QFYTNRW*

BS05027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-PA 557 CG11025-PA 1..557 1..557 2863 100 Plus
isopeptidase-T-3-PC 561 CG11025-PC 1..561 1..557 2848 99.3 Plus
isopeptidase-T-3-PB 435 CG11025-PB 11..435 133..557 2181 100 Plus