Clone Sequence Records
BS05027.3prime Sequence
773 bp (772 high quality bases) assembled on 2005-09-08
> BS05027.3prime
TCCCATTAAAAGGNGNGNNAAANGAATGGTNTAGAAAGNTTTNACCCTTG
GATGGTATAGAAGTGATTGATGNNAAGNATATGGTTGTGNTNATGGTAGT
TTTGAAGGATATGTGTGATGATTGAGGTTGTGTNGTTGTNGNNATGNNAT
ANGTGTATGGGATGTTTGTTTTNNAGGATGNNNAGAAATGNNAAAAAAGT
NTTTGGATTGNTTAGGGTNATNTGGANTTGTGGNATTTNTAGGATNANTT
TTAGGATGGGNGAATNGGGTGTNAAGNNTTNANGNAGTTNAATAAAGATA
GAGGATTGATTGTNGGANAAGNATTGGGANGNGGAANGTTTGTTGTTGTT
AGTTTTNTTNAGTGGNGNGAGNANTGGNGTATGGTNGAAGNAAATTTNTG
TAAGNGATTNGANAATGTNATNGGTGGGAGGGGAATNANGGTGGNTGTAG
ATTNGTANAATNTNAATNAAGGGAGNAGTGTTTTGAATGGTTTAATTATT
GGTGAGAATNGTGGAGGGTGAGATGGAAGATAGANTGTGNTGNATATTNA
TGNNNGGNGGTTNNTGTGGATTTTNNTNGTTTTGGTTNTGTATTAGNNAN
TTNATNGTGGTNGAGTAAATGGNATTGTGTGNTTTTAAGGGAAATGGGGA
TAGATTNNGNTTGAAGNNNATGTNNANGAGGNATTGNAGNGTATNTGNTT
GGTGATTTTGGAGATTGATNAAATGTTGNTTTAGAATAGTTATTAGGGGT
GGAGNATAAGGGGNAGTTTNTAT
BS05027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 1164..1291 | 552..425 | 249 | 85.1 | Minus |
CG11025-PB | 1308 | isopeptidase-T-3-RB | 798..925 | 552..425 | 249 | 85.1 | Minus |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 1577..1623 | 139..93 | 141 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 1103..1810 | 762..55 | 1403 | 75.8 | Minus |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 692..1399 | 762..55 | 1403 | 75.8 | Minus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 1091..1798 | 762..55 | 1403 | 75.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671974..19672241 | 762..495 | 645 | 78.7 | Minus |
2R | 25286936 | 2R | 19672295..19672595 | 493..193 | 497 | 73.4 | Minus |
2R | 25286936 | 2R | 19672712..19672796 | 139..55 | 239 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:57:05 has no hits.
BS05027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 13:26:55 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-31 04:23:47 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 20:25:56 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-12 20:25:56 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-31 04:23:47 has no hits.
BS05027.5prime Sequence
823 bp (713 high quality bases) assembled on 2005-12-02
> BS05027.5prime
GAAGTTATCAGTCGACATGATACCCTGGATGCGGGAGAAGTTCAACGAGA
AACGGGCCAAGTGGTTGGCGCGTAGCAAGCGCAGCGGTGGTTCTCCGGCT
GACGAAAGCCCTCGGAGCAGCAGTCATAGCCACAGCCAGCGGACAGACGC
CAGCGATGCGGAGAGCCTGAGCGGATCCTCGTTGAATGTCCACACGGCGG
AATCTGAAACGCAGACGGATGGCGGGATATCCGCTTCCAATTCGCGGCCC
CTTGTGGGCGGGGGCAGTTGCGTCCTAAGGACTCCATCGCCCGCTCGCCG
ACGTCGCATTCACCTTGAGCTACAGCTGCAGCGACGAGAGGAACGTGCTG
AGCATCAGAAGGTGGTGCCACAGGACTCGCCCACGCCCACTCACCAACAG
CAGGCTAATGCGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTACTTC
TGGCGAGGCAGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGG
TAATCTGCCCCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAATAAG
CGCCTAAACGAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACGATCC
CGACTCCATCCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCGCGAT
ACCGTCTCTATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGGCGAC
ACGCTGGCCCAGCTAANAGTTCGCAACAATGAGACTTTCATACTCTCCCC
ACGACCCAATACTCTGCCGCAGACTGTTTCACGGATACGTGAAGTTCCTG
GCCCAAATGAGCAGCTGGTGGAG
BS05027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 1..807 | 17..823 | 3966 | 99.6 | Plus |
CG11025-PB | 1308 | isopeptidase-T-3-RB | 30..441 | 412..823 | 1991 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 138..944 | 17..823 | 3994 | 99.6 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 138..956 | 17..823 | 3864 | 98.2 | Plus |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 134..545 | 412..823 | 2019 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671361..19671772 | 412..823 | 2019 | 99.3 | Plus |
2R | 25286936 | 2R | 19670755..19671150 | 17..412 | 1980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:20:19 has no hits.
BS05027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:57 Download gff for
BS05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:57 Download gff for
BS05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:59:34 Download gff for
BS05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 138..944 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:43:27 Download gff for
BS05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 138..944 | 17..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:43:27 Download gff for
BS05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19670755..19671149 | 17..411 | 100 | -> | Plus |
2R | 19671361..19671772 | 412..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:59:34 Download gff for
BS05027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558260..15558654 | 17..411 | 100 | -> | Plus |
arm_2R | 15558866..15559277 | 412..823 | 99 | | Plus |
BS05027.complete Sequence
1706 bp assembled on 2008-01-02
GenBank Submission: FJ635041
> BS05027.complete
GAAGTTATCAGTCGACATGATACCCTGGATGCGGGAGAAGTTCAACGAGA
AACGGGCCAAGTGGTTGGCGCGTAGCAAGCGCAGCGGTGGTTCTCCGGCT
GACGAAAGCCCTCGGAGCAGCAGTCATAGCCACAGCCAGCGGACAGACGC
CAGCGATGCGGAGAGCCTGAGCGGATCCTCGTTGAATGTCCACACGGCGG
AATCTGAAACGCAGACGGATGGCGGGATATCCGCTTCCAATTCGCGGCCC
CTTGTGGGCGGGGGCAGTTGCGTCCTAAGGACTCCATCGCCCGCTCGCCG
ACGTCGCATTCACCTTGAGCTACAGCTGCAGCGACGAGAGGAACGTGCTG
AGCATCAGAAGGTGGTGCCACAGGACTCGCCCACGCCCACTCACCAACAG
CAGGCTAATGCGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTACTTC
TGGCGAGGCAGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGG
TAATCTGCCCCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAATAAG
CGCCTAAACGAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACGATCC
CGACTCCATCCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCGCGAT
ACCGTCTCTATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGGCGAC
ACGCTGGCCCAGCTAAAAGTTCGCAACAATGAGACTTTCATACTCTCCCC
ACGACGCAATACTCTGCCGCAGACTGTTTCACGGATACGTGAGGTTCCTG
GCCCAAATGAGCAGCTGGTGGAGAGCGCCACCCGATACGTGCCCGTCAAT
TGCAACCAGCTGCCCACCATCGATATTAATGAAATCTTTCAGCAGTCGAA
TATCCAATACGATGTGCGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTG
CGGCGGTTATAGGAGCTGGCCCTTATGCTCCACGCCTGATAGCTATGCTA
AAGCAACGTTTGATCAATCGCCGAAATCAGCAAGCGGATACGCTGCAATG
CCTCGTGGACATGGGCTTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAG
CACACAATGGCATTTACTCGACCACGATGGAGTGGCTAATACAGAACCAA
AACGAGGAAAATCCACAGGAACCGCCGGGCATGAATATGCAGCACAGTCT
ATCTTCCATCTCACCCTCCACGATTGTCACCAATAATGAAACCATTGAAA
ACACTGCTGCCTTGATTGAGATTGTACGAATCTACAGCCACCGGGATTCC
CCTCCCAGCGATGAGATTGTGGAATCGCTTACAGAAATGGGCTTCGAGGA
GACGGCAGTGCTCGCGGCACTGAAGAAAACTGGCAACAACAAGGCGTCCG
CGTGCGAATGGTTGTGCGACAATCGATCGGGTAGCGTTATTGAACTGCGT
GAAGGCTTGGCGCCCGATTCGCCCATCCTAAAGGTGATCCTGGAAATGCC
ACAAGTCCAGATGACCCTAAGCAATCCAAAGACTTTTTTGGCATTTCTGG
GCATCCTGGAAAACGAACATGCGATACGCGTGTGGCGTGGCGACAACGAC
ACAACCTCGGTCATCACACATATCCTTCAAAAGTACCATGAGGAGAAGCA
TGTGCTTGGCATCAATCAGTTCTATACGAACCGCTGGTGAAAGCTTTCTA
GACCAT
BS05027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RA | 1674 | CG11025-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
isopeptidase-T-3-RC | 1686 | CG11025-PC | 1..1686 | 17..1690 | 8215 | 99.3 | Plus |
isopeptidase-T-3-RB | 1308 | CG11025-PB | 30..1308 | 412..1690 | 6395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 138..1814 | 17..1693 | 8385 | 100 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 138..1826 | 17..1693 | 8230 | 99.3 | Plus |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 134..1415 | 412..1693 | 6410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671361..19671850 | 412..901 | 2450 | 100 | Plus |
2R | 25286936 | 2R | 19670755..19671150 | 17..412 | 1980 | 100 | Plus |
2R | 25286936 | 2R | 19671906..19672242 | 902..1238 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 19672294..19672597 | 1238..1541 | 1520 | 100 | Plus |
2R | 25286936 | 2R | 19672660..19672812 | 1541..1693 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:19:32 has no hits.
BS05027.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:26 Download gff for
BS05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 1..1674 | 17..1690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:20 Download gff for
BS05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 137..1809 | 17..1689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:00 Download gff for
BS05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 138..1810 | 17..1689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:27 Download gff for
BS05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 137..1813 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:27 Download gff for
BS05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 138..1810 | 17..1689 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:27 Download gff for
BS05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19670755..19671149 | 17..411 | 100 | -> | Plus |
2R | 19671361..19671850 | 412..901 | 100 | -> | Plus |
2R | 19671906..19672241 | 902..1237 | 100 | -> | Plus |
2R | 19672294..19672597 | 1238..1541 | 100 | -> | Plus |
2R | 19672661..19672808 | 1542..1689 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:00 Download gff for
BS05027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558260..15558654 | 17..411 | 100 | -> | Plus |
arm_2R | 15558866..15559355 | 412..901 | 100 | -> | Plus |
arm_2R | 15559411..15559746 | 902..1237 | 100 | -> | Plus |
arm_2R | 15559799..15560102 | 1238..1541 | 100 | -> | Plus |
arm_2R | 15560166..15560313 | 1542..1689 | 100 | | Plus |
BS05027.pep Sequence
Translation from 16 to 1689
> BS05027.pep
MIPWMREKFNEKRAKWLARSKRSGGSPADESPRSSSHSHSQRTDASDAES
LSGSSLNVHTAESETQTDGGISASNSRPLVGGGSCVLRTPSPARRRRIHL
ELQLQRREERAEHQKVVPQDSPTPTHQQQANAKSAHTNRPGSSTSGEADD
ASRPGESILVRVICPSSRVLIFKTDVNKRLNELKSEVILELSDDPDSIQL
FAPDVRHLNPRYRLYRAEYFGGELNEGDTLAQLKVRNNETFILSPRRNTL
PQTVSRIREVPGPNEQLVESATRYVPVNCNQLPTIDINEIFQQSNIQYDV
RKVLISLAQASAAVIGAGPYAPRLIAMLKQRLINRRNQQADTLQCLVDMG
FKRELAAFALKAHNGIYSTTMEWLIQNQNEENPQEPPGMNMQHSLSSISP
STIVTNNETIENTAALIEIVRIYSHRDSPPSDEIVESLTEMGFEETAVLA
ALKKTGNNKASACEWLCDNRSGSVIELREGLAPDSPILKVILEMPQVQMT
LSNPKTFLAFLGILENEHAIRVWRGDNDTTSVITHILQKYHEEKHVLGIN
QFYTNRW*
BS05027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-PA | 557 | CG11025-PA | 1..557 | 1..557 | 2863 | 100 | Plus |
isopeptidase-T-3-PC | 561 | CG11025-PC | 1..561 | 1..557 | 2848 | 99.3 | Plus |
isopeptidase-T-3-PB | 435 | CG11025-PB | 11..435 | 133..557 | 2181 | 100 | Plus |