Clone BS05028 Report

Search the DGRC for BS05028

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG4825-RA
Protein status:BS05028.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05028.3prime Sequence

859 bp (844 high quality bases) assembled on 2005-12-02

> BS05028.3prime
ATGGTCTAGAAAGCTTTTATTTTAGTTTCTTCTCTTTTTGCGGCGACAAT
TTACCTTTCGAGGGCGATGATGAGCTGGCAGGAATAGTTTCTTTTGTTTT
TGCGGGCGTCGATGAAACCTTTTTCAGCTGTCGCTGCTGCCAGTAAACCG
CGAGGTAGACAAATGCCACCGAGATTATTACTTGGACAGTCAGCCACAGG
ACAATGTTGATGGCTTGCGTGCGCTCAAACAACTCCTTGCCATTCTTGAT
GCACAGAATAGCTTCGGAGACCATGATGGCGCCGTAAACCCAACACTGGG
TGCCGACTCTCTTGCAGCGTGTGTCGGTGACATATACGTAATATTGCCTA
ACCGAAGGCGCCACAAACAGACCGATGAAAATGAGACGACCTATCACAAT
GAAGTGATCCGGTGGCATCTCAAAGATGTGCTTCAAGAAGAATGTGTTCA
GCTCGGTGACCTGCCAGAAGATCACAAGCTGAATGACGGCGGCAAATCTC
ATCGCCGTGGACTTGGGATCCAGCCAGCGAATGGCCGACCAGCTCTCGGG
CGTAAATTGCAGCATGGCACGCTTGATTTTACCCGTTGTGGTGGATATGT
CCTTAATACTGGCCCACTTGTACTCGCGCATCTCCAGAATCTGGCAGATC
TTCAGACCCATCCAAATGCCGAGACCGTTGCAGATGATCACATCCAGGAT
GAGGGCATCCCACCAGCACTCGATGAAGTTGGGCAGCAGGTGCGCAAAGG
TTATTTCGGTAATCTCCCACATCACAGAAATGGCCCACAGAATGCCCATG
TGACGAATGAGGATGGCCTTAAAGGCCCAGCCCAAGAAGTGACCCCAGGC
AAAGACGTC

BS05028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-PA 1497 CG4825-RA 655..1497 859..17 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-RA 1896 CG4825-RA 1003..1845 859..17 4215 100 Minus
CG4825-RB 2046 CG4825-RB 1003..1842 859..17 4160 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20523629..20524141 347..859 2565 100 Plus
3L 28110227 3L 20523352..20523566 137..351 1075 100 Plus
3L 28110227 3L 20523200..20523287 52..139 440 100 Plus
3L 28110227 3L 20522644..20522683 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:16:39 has no hits.

BS05028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:59:58 Download gff for BS05028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4825-PA 655..1497 17..859 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:58 Download gff for BS05028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4825-PA 655..1497 17..859 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:16:35 Download gff for BS05028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1003..1855 7..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:43 Download gff for BS05028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1003..1855 7..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:43 Download gff for BS05028.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20523203..20523284 55..136 100 <- Plus
3L 20523352..20523562 137..347 100 <- Plus
3L 20522634..20522681 7..54 91 <- Plus
3L 20523630..20524141 348..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:16:35 Download gff for BS05028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20515734..20515781 7..54 91 <- Plus
arm_3L 20516303..20516384 55..136 100 <- Plus
arm_3L 20516452..20516662 137..347 100 <- Plus
arm_3L 20516730..20517241 348..859 100   Plus

BS05028.5prime Sequence

793 bp (792 high quality bases) assembled on 2005-12-02

> BS05028.5prime
GAAGTTATCAGTCGACATGAAGAAGCGCACTAATTCACGTGGCACCCCGA
CCTCGTCGGGCGACGCGCTACTGGACACCTCCTTCTCCTCCGCCGGCGAT
GCTGAGCGGGATCATCCCGCCTACAAATCAGGCGCGGCCAGTGCCCCTGC
CACGCCCACCAAGCGACGGGATGGCAGCGATGGCAGTGTCAGCAGCGCGG
GAGCACGCAGGAAGCGCAAGGACGAGATCGCCCAGACATTTGTGATCGTC
AACGAACGTCCCGTGGACGACATATCGCTGGACTTCTTCTACAAGCCACA
CACCATCACCTTGCTGGCTGTTTCGGTGCTCGCCGTCATGTACTTTGCGT
TCGTCAGAAACGAGGCGAACGTGGATGAGAATCTCTGGGCCGGCCTCCTC
TGCATTGTGTTCTTCTTTCTGATCGTCTCGGTGATTGCATTTCCCAATGG
ACCCTTCACACGACCCCATCCCGCCGTCTGGCGGATATTATTCGGATGCT
CTGTGCTGTACCTGCTGACGCTACAATTCCTGATGTTCCAAAACTACCCG
ACTATCAGGAGCATATTCTACTGGATTGATCCAAAGTTGAAGAACTTCCA
TATCGATATGGAAAAGGAGTATGGCGTCAATTGTTCGGACATCAGTTGGG
ATCGCGTTAAAGGCCACTTGGACGTCTTTGCCTGGGGTCACTTCTTGGGC
TGGGCCTTTAAGGCCATCCTCATTCGTCACATGGGCATTCTGTGGGCCAT
TTCTGTGATGTGGGAGATTACCGAAATAACCTTTGCGCACCTG

BS05028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-PA 1497 CG4825-RA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-RB 2046 CG4825-RB 349..1125 17..793 3885 100 Plus
CG4825-RA 1896 CG4825-RA 349..1125 17..793 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20525486..20525826 357..17 1705 100 Minus
3L 28110227 3L 20524254..20524516 617..355 1315 100 Minus
3L 28110227 3L 20524019..20524197 793..615 895 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:57:51 has no hits.

BS05028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:00 Download gff for BS05028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4825-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:24:59 Download gff for BS05028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4825-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:58 Download gff for BS05028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 344..1125 10..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:52 Download gff for BS05028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 344..1125 10..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:52 Download gff for BS05028.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20525486..20525831 10..357 99   Minus
3L 20524019..20524195 617..793 100 <- Minus
3L 20524255..20524513 358..616 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:58 Download gff for BS05028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20517119..20517295 617..793 100 <- Minus
arm_3L 20517355..20517613 358..616 100 <- Minus
arm_3L 20518586..20518931 10..357 99   Minus

BS05028.complete Sequence

1529 bp (1529 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635042

> BS05028.complete
GAAGTTATCAGTCGACATGAAGAAGCGCACTAATTCACGTGGCACCCCGA
CCTCGTCGGGCGACGCGCTACTGGACACCTCCTTCTCCTCCGCCGGCGAT
GCTGAGCGGGATCATCCCGCCTACAAATCAGGCGCGGCCAGTGCCCCTGC
CACGCCCACCAAGCGACGGGATGGCAGCGATGGCAGTGTCAGCAGCGCGG
GAGCACGCAGGAAGCGCAAGGACGAGATCGCCCAGACATTTGTGATCGTC
AACGAACGTCCCGTGGACGACATATCGCTGGACTTCTTCTACAAGCCACA
CACCATCACCTTGCTGGCTGTTTCGGTGCTCGCCGTCATGTACTTTGCGT
TCGTCAGAAACGAGGCGAACGTGGATGAGAATCTCTGGGCCGGCCTCCTC
TGCATTGTGTTCTTCTTTCTGATCGTCTCGGTGATTGCATTTCCCAATGG
ACCCTTCACACGACCCCATCCCGCCGTCTGGCGGATATTATTCGGATGCT
CTGTGCTGTACCTGCTGACGCTACAATTCCTGATGTTCCAAAACTACCCG
ACTATCAGGAGCATATTCTACTGGATTGATCCAAAGTTGAAGAACTTCCA
TATCGATATGGAAAAGGAGTATGGCGTCAATTGTTCGGACATCAGTTGGG
ATCGCGTTAAAGGCCACTTGGACGTCTTTGCCTGGGGTCACTTCTTGGGC
TGGGCCTTTAAGGCCATCCTCATTCGTCACATGGGCATTCTGTGGGCCAT
TTCTGTGATGTGGGAGATTACCGAAATAACCTTTGCGCACCTGCTGCCCA
ACTTCATCGAGTGCTGGTGGGATGCCCTCATCCTGGATGTGATCATCTGC
AACGGTCTCGGCATTTGGATGGGTCTGAAGATCTGCCAGATTCTGGAGAT
GCGCGAGTACAAGTGGGCCAGTATTAAGGACATATCCACCACAACGGGTA
AAATCAAGCGTGCCATGCTGCAATTTACGCCCGAGAGCTGGTCGGCCATT
CGCTGGCTGGATCCCAAGTCCACGGCGATGAGATTTGCCGCCGTCATTCA
GCTTGTGATCTTCTGGCAGGTCACCGAGCTGAACACATTCTTCTTGAAGC
ACATCTTTGAGATGCCACCGGATCACTTCATTGTGATAGGTCGTCTCATT
TTCATCGGTCTGTTTGTGGCGCCTTCGGTTAGGCAATATTACGTATATGT
CACCGACACACGCTGCAAGAGAGTCGGCACCCAGTGTTGGGTTTACGGCG
CCATCATGGTCTCCGAAGCTATTCTGTGCATCAAGAATGGCAAGGAGTTG
TTTGAGCGCACGCAAGCCATCAACATTGTCCTGTGGCTGACTGTCCAAGT
AATAATCTCGGTGGCATTTGTCTACCTCGCGGTTTACTGGCAGCAGCGAC
AGCTGAAAAAGGTTTCATCGACGCCCGCAAAAACAAAAGAAACTATTCCT
GCCAGCTCATCATCGCCCTCGAAAGGTAAATTGTCGCCGCAAAAAGAGAA
GAAACTAAAATAAAAGCTTTCTAGACCAT

BS05028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-RA 1497 CG4825-PA 1..1497 17..1513 7485 100 Plus
CG4825-RB 1494 CG4825-PB 1..1494 17..1513 7405 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-RA 1896 CG4825-RA 349..1845 17..1513 7485 100 Plus
CG4825-RB 2046 CG4825-RB 349..1842 17..1513 7405 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20523629..20524197 1183..615 2845 100 Minus
3L 28110227 3L 20525486..20525826 357..17 1705 100 Minus
3L 28110227 3L 20524254..20524516 617..355 1315 100 Minus
3L 28110227 3L 20523352..20523566 1393..1179 1075 100 Minus
3L 28110227 3L 20523200..20523287 1478..1391 440 100 Minus
3L 28110227 3L 20522644..20522683 1513..1474 200 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:45:58 has no hits.

BS05028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:12 Download gff for BS05028.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 1..1497 17..1513 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:37 Download gff for BS05028.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 351..1862 10..1523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:49 Download gff for BS05028.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 349..1843 17..1511 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:12 Download gff for BS05028.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 351..1862 10..1523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:54 Download gff for BS05028.complete
Subject Subject Range Query Range Percent Splice Strand
CG4825-RA 349..1843 17..1511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:54 Download gff for BS05028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20525486..20525826 17..357 100   Minus
3L 20522646..20522681 1476..1511 100 <- Minus
3L 20523203..20523284 1394..1475 100 <- Minus
3L 20523352..20523562 1183..1393 100 <- Minus
3L 20523630..20524195 617..1182 100 <- Minus
3L 20524255..20524513 358..616 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:49 Download gff for BS05028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20518586..20518926 17..357 100   Minus
arm_3L 20515746..20515781 1476..1511 100 <- Minus
arm_3L 20516303..20516384 1394..1475 100 <- Minus
arm_3L 20516452..20516662 1183..1393 100 <- Minus
arm_3L 20516730..20517295 617..1182 100 <- Minus
arm_3L 20517355..20517613 358..616 100 <- Minus

BS05028.pep Sequence

Translation from 16 to 1512

> BS05028.pep
MKKRTNSRGTPTSSGDALLDTSFSSAGDAERDHPAYKSGAASAPATPTKR
RDGSDGSVSSAGARRKRKDEIAQTFVIVNERPVDDISLDFFYKPHTITLL
AVSVLAVMYFAFVRNEANVDENLWAGLLCIVFFFLIVSVIAFPNGPFTRP
HPAVWRILFGCSVLYLLTLQFLMFQNYPTIRSIFYWIDPKLKNFHIDMEK
EYGVNCSDISWDRVKGHLDVFAWGHFLGWAFKAILIRHMGILWAISVMWE
ITEITFAHLLPNFIECWWDALILDVIICNGLGIWMGLKICQILEMREYKW
ASIKDISTTTGKIKRAMLQFTPESWSAIRWLDPKSTAMRFAAVIQLVIFW
QVTELNTFFLKHIFEMPPDHFIVIGRLIFIGLFVAPSVRQYYVYVTDTRC
KRVGTQCWVYGAIMVSEAILCIKNGKELFERTQAINIVLWLTVQVIISVA
FVYLAVYWQQRQLKKVSSTPAKTKETIPASSSSPSKGKLSPQKEKKLK*

BS05028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4825-PA 498 CG4825-PA 1..498 1..498 2630 100 Plus
CG4825-PB 497 CG4825-PB 1..497 1..498 2613 99.8 Plus