Clone BS05029 Report

Search the DGRC for BS05029

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptBaldspot-RA
Protein status:BS05029.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05029.3prime Sequence

914 bp (844 high quality bases) assembled on 2005-12-02

> BS05029.3prime
ATGGTCTAGAAAGCTTTTACTGCGCCTTGGCCTTGCGCAGATAGGCTGCC
TGATCCTCGCCAGCGCCGATGAACTTGGAGCTCTCGCTGGCCTGCTGGGG
GCTGCTCGACTGCTTGACCACATTCTGGGCTGCCAGGGAGGCGGCCATGC
GCCGGCTCTTGTGACCACCGGGCGCCAGGTACGCCTTGTAGAAGAAGCGC
GCGAACAGGACAAAGTAGCTGGAGTACATGGCGATCGACAGATTGATGTT
GCGCTGCGAGATGTGACAGGAGGAGGTGCCGTGCGTCTTCAGGAAGCCAT
TGGCCCACACGTTGATCGCACATCCGATGATCATCTGAGCCAGCTGCAGC
GACGTGATGATCATCGAGATGAACCTGGGCGGATTGAAGCGGGCCGCCTT
CAGAGCATAGTAGCTGTACATCACCGAGTGCACGCAGTAGTTCATCACGA
TGAACCAGCGGGCAGAGCTGGTATATTCCGTATAGCTGAACCACGAGTAG
ATCAGCACGGTGATGTGGTGATACCAGTGCAAAAAGATGAGTGGCTGCTT
GCGGAGCACAATGAATATCGTGTCGCCCAGCTCCGGCAGTTTGCTGAGCA
CGAAGAGCCAGGTCCAGAAGCCGCACACGCGATCTTGCTCGATGTAGCTG
GGCACGCAGACGGAGTGGAAGAGTCCGTAGTGACGCAGCACGTGAATCAG
CTCCGGCGCCGTTCGGGCAGCACCCATGATGCTGAACATGGCCAGCAAGG
TGTTCCATATGATCAGCGGGCCGCGCAATTGGAATCTAGGCCGATTTTGC
ATAAAGTGCTGACCACCGAAGATGACCAGCATGTAGATGCCGCAGTAGTA
GAACACCCATGTCCAGTTCTCTAGCATCCATTTGCGCGTCCGCTGGTGTA
TGAAATCGTTCTCG

BS05029.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3971-PA 951 Baldspot-RA 54..951 914..17 4490 100 Minus
CG3971-PB 951 Baldspot-RB 54..951 914..17 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Baldspot-RB 2445 CG3971-RB 314..1213 914..15 4500 100 Minus
Baldspot-RA 2784 CG3971-RA 254..1153 914..15 4500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16650073..16650587 15..529 2560 99.8 Plus
3L 28110227 3L 16651398..16651537 648..787 700 100 Plus
3L 28110227 3L 16651130..16651258 522..650 645 100 Plus
3L 28110227 3L 16659230..16659358 786..914 645 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:55:31 has no hits.

BS05029.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:01 Download gff for BS05029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3971-PA 54..951 17..914 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:02 Download gff for BS05029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3971-PB 54..951 17..914 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 18:59:56 Download gff for BS05029.3prime
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 254..1153 15..914 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:11 Download gff for BS05029.3prime
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 254..1153 15..914 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:11 Download gff for BS05029.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16650073..16650582 15..524 100 <- Plus
3L 16651133..16651255 525..647 100 <- Plus
3L 16651398..16651535 648..785 100 <- Plus
3L 16659230..16659358 786..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 18:59:56 Download gff for BS05029.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16643173..16643682 15..524 100 <- Plus
arm_3L 16644233..16644355 525..647 100 <- Plus
arm_3L 16644498..16644635 648..785 100 <- Plus
arm_3L 16652330..16652458 786..914 100   Plus

BS05029.5prime Sequence

916 bp (793 high quality bases) assembled on 2005-12-02

> BS05029.5prime
GAAGTTATCAGTCGACATGATCAACATGGACATTAGCGTTACGCCCAATT
ACTCGTACATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGC
AAATGGATGCTAGAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTA
CATGCTGGTCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGAT
TCCAATTGCGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTC
AGCATCATGGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCG
TCACTACGGACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAG
ATCGCGTGTGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCAAACTGCCG
GAGCTGGGCGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTT
TTTGCACTGGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCT
ATACGGAATATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGC
GTGCACTCGGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAA
TCCGCCCAGGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGA
TGATCATCGGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACG
CACGGCACCTCCTCCTGTCACATCTCGCAGCGCAACATCAATCTGTCGAT
CGCCATGTACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGG
CGTACCTGGCGCCCGGTGGTCACAAGAGCCGGCGCATGGCCGCCTCCCTG
GCAGCCCAGAATGTGGTCAAGCAGTCGAGCAGCCCCCAGCAGGCCAGCGA
GAGCTCCAAGTTCATC

BS05029.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3971-PA 951 Baldspot-RA 1..900 17..916 4500 100 Plus
CG3971-PB 951 Baldspot-RB 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Baldspot-RB 2445 CG3971-RB 261..1160 17..916 4500 100 Plus
Baldspot-RA 2784 CG3971-RA 201..1100 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16650126..16650587 916..455 2295 99.8 Minus
3L 28110227 3L 16659230..16659411 198..17 910 100 Minus
3L 28110227 3L 16651398..16651537 336..197 700 100 Minus
3L 28110227 3L 16651130..16651258 462..334 645 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:55:54 has no hits.

BS05029.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:03 Download gff for BS05029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3971-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:03 Download gff for BS05029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3971-PB 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:28 Download gff for BS05029.5prime
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 194..1100 9..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:30 Download gff for BS05029.5prime
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 194..1100 9..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:30 Download gff for BS05029.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16659230..16659418 9..198 97   Minus
3L 16651133..16651255 337..459 100 <- Minus
3L 16651398..16651535 199..336 100 <- Minus
3L 16650126..16650582 460..916 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:28 Download gff for BS05029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16643226..16643682 460..916 100 <- Minus
arm_3L 16644233..16644355 337..459 100 <- Minus
arm_3L 16644498..16644635 199..336 100 <- Minus
arm_3L 16652330..16652518 9..198 97   Minus

BS05029.complete Sequence

983 bp (983 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635043

> BS05029.complete
GAAGTTATCAGTCGACATGATCAACATGGACATTAGCGTTACGCCCAATT
ACTCGTACATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGC
AAATGGATGCTAGAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTA
CATGCTGGTCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGAT
TCCAATTGCGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTC
AGCATCATGGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCG
TCACTACGGACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAG
ATCGCGTGTGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCAAACTGCCG
GAGCTGGGCGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTT
TTTGCACTGGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCT
ATACGGAATATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGC
GTGCACTCGGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAA
TCCGCCCAGGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGA
TGATCATCGGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACG
CACGGCACCTCCTCCTGTCACATCTCGCAGCGCAACATCAATCTGTCGAT
CGCCATGTACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGG
CGTACCTGGCGCCCGGTGGTCACAAGAGCCGGCGCATGGCCGCCTCCCTG
GCAGCCCAGAATGTGGTCAAGCAGTCGAGCAGCCCCCAGCAGGCCAGCGA
GAGCTCCAAGTTCATCGGCGCTGGCGAGGATCAGGCAGCCTATCTGCGCA
AGGCCAAGGCGCAGTAAAAGCTTTCTAGACCAT

BS05029.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Baldspot-RB 951 CG3971-PB 1..951 17..967 4755 100 Plus
Baldspot-RA 951 CG3971-PA 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Baldspot-RB 2445 CG3971-RB 261..1213 17..969 4765 100 Plus
Baldspot-RA 2784 CG3971-RA 201..1153 17..969 4765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16650073..16650587 969..455 2560 99.8 Minus
3L 28110227 3L 16659230..16659411 198..17 910 100 Minus
3L 28110227 3L 16651398..16651537 336..197 700 100 Minus
3L 28110227 3L 16651130..16651258 462..334 645 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:55:23 has no hits.

BS05029.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:13 Download gff for BS05029.complete
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RB 1..951 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:38 Download gff for BS05029.complete
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RB 266..1225 9..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:53 Download gff for BS05029.complete
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 201..1149 17..965 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:13 Download gff for BS05029.complete
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RB 266..1225 9..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:56 Download gff for BS05029.complete
Subject Subject Range Query Range Percent Splice Strand
Baldspot-RA 201..1149 17..965 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:56 Download gff for BS05029.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16651398..16651535 199..336 100 <- Minus
3L 16659230..16659411 17..198 100   Minus
3L 16650077..16650582 460..965 100 <- Minus
3L 16651133..16651255 337..459 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:53 Download gff for BS05029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16643177..16643682 460..965 100 <- Minus
arm_3L 16644233..16644355 337..459 100 <- Minus
arm_3L 16644498..16644635 199..336 100 <- Minus
arm_3L 16652330..16652511 17..198 100   Minus

BS05029.pep Sequence

Translation from 16 to 966

> BS05029.pep
MINMDISVTPNYSYIFDFENDFIHQRTRKWMLENWTWVFYYCGIYMLVIF
GGQHFMQNRPRFQLRGPLIIWNTLLAMFSIMGAARTAPELIHVLRHYGLF
HSVCVPSYIEQDRVCGFWTWLFVLSKLPELGDTIFIVLRKQPLIFLHWYH
HITVLIYSWFSYTEYTSSARWFIVMNYCVHSVMYSYYALKAARFNPPRFI
SMIITSLQLAQMIIGCAINVWANGFLKTHGTSSCHISQRNINLSIAMYSS
YFVLFARFFYKAYLAPGGHKSRRMAASLAAQNVVKQSSSPQQASESSKFI
GAGEDQAAYLRKAKAQ*

BS05029.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Baldspot-PB 316 CG3971-PB 1..316 1..316 1696 100 Plus
Baldspot-PA 316 CG3971-PA 1..316 1..316 1696 100 Plus
bond-PC 322 CG6921-PC 50..309 52..310 204 25.5 Plus
bond-PA 322 CG6921-PA 50..309 52..310 204 25.5 Plus
bond-PB 322 CG6921-PB 50..309 52..310 204 25.5 Plus