Clone Sequence Records
BS05029.3prime Sequence
914 bp (844 high quality bases) assembled on 2005-12-02
> BS05029.3prime
ATGGTCTAGAAAGCTTTTACTGCGCCTTGGCCTTGCGCAGATAGGCTGCC
TGATCCTCGCCAGCGCCGATGAACTTGGAGCTCTCGCTGGCCTGCTGGGG
GCTGCTCGACTGCTTGACCACATTCTGGGCTGCCAGGGAGGCGGCCATGC
GCCGGCTCTTGTGACCACCGGGCGCCAGGTACGCCTTGTAGAAGAAGCGC
GCGAACAGGACAAAGTAGCTGGAGTACATGGCGATCGACAGATTGATGTT
GCGCTGCGAGATGTGACAGGAGGAGGTGCCGTGCGTCTTCAGGAAGCCAT
TGGCCCACACGTTGATCGCACATCCGATGATCATCTGAGCCAGCTGCAGC
GACGTGATGATCATCGAGATGAACCTGGGCGGATTGAAGCGGGCCGCCTT
CAGAGCATAGTAGCTGTACATCACCGAGTGCACGCAGTAGTTCATCACGA
TGAACCAGCGGGCAGAGCTGGTATATTCCGTATAGCTGAACCACGAGTAG
ATCAGCACGGTGATGTGGTGATACCAGTGCAAAAAGATGAGTGGCTGCTT
GCGGAGCACAATGAATATCGTGTCGCCCAGCTCCGGCAGTTTGCTGAGCA
CGAAGAGCCAGGTCCAGAAGCCGCACACGCGATCTTGCTCGATGTAGCTG
GGCACGCAGACGGAGTGGAAGAGTCCGTAGTGACGCAGCACGTGAATCAG
CTCCGGCGCCGTTCGGGCAGCACCCATGATGCTGAACATGGCCAGCAAGG
TGTTCCATATGATCAGCGGGCCGCGCAATTGGAATCTAGGCCGATTTTGC
ATAAAGTGCTGACCACCGAAGATGACCAGCATGTAGATGCCGCAGTAGTA
GAACACCCATGTCCAGTTCTCTAGCATCCATTTGCGCGTCCGCTGGTGTA
TGAAATCGTTCTCG
BS05029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3971-PA | 951 | Baldspot-RA | 54..951 | 914..17 | 4490 | 100 | Minus |
CG3971-PB | 951 | Baldspot-RB | 54..951 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Baldspot-RB | 2445 | CG3971-RB | 314..1213 | 914..15 | 4500 | 100 | Minus |
Baldspot-RA | 2784 | CG3971-RA | 254..1153 | 914..15 | 4500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16650073..16650587 | 15..529 | 2560 | 99.8 | Plus |
3L | 28110227 | 3L | 16651398..16651537 | 648..787 | 700 | 100 | Plus |
3L | 28110227 | 3L | 16651130..16651258 | 522..650 | 645 | 100 | Plus |
3L | 28110227 | 3L | 16659230..16659358 | 786..914 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:55:31 has no hits.
BS05029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:01 Download gff for
BS05029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3971-PA | 54..951 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:02 Download gff for
BS05029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3971-PB | 54..951 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 18:59:56 Download gff for
BS05029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 254..1153 | 15..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:11 Download gff for
BS05029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 254..1153 | 15..914 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:11 Download gff for
BS05029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16650073..16650582 | 15..524 | 100 | <- | Plus |
3L | 16651133..16651255 | 525..647 | 100 | <- | Plus |
3L | 16651398..16651535 | 648..785 | 100 | <- | Plus |
3L | 16659230..16659358 | 786..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 18:59:56 Download gff for
BS05029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16643173..16643682 | 15..524 | 100 | <- | Plus |
arm_3L | 16644233..16644355 | 525..647 | 100 | <- | Plus |
arm_3L | 16644498..16644635 | 648..785 | 100 | <- | Plus |
arm_3L | 16652330..16652458 | 786..914 | 100 | | Plus |
BS05029.5prime Sequence
916 bp (793 high quality bases) assembled on 2005-12-02
> BS05029.5prime
GAAGTTATCAGTCGACATGATCAACATGGACATTAGCGTTACGCCCAATT
ACTCGTACATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGC
AAATGGATGCTAGAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTA
CATGCTGGTCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGAT
TCCAATTGCGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTC
AGCATCATGGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCG
TCACTACGGACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAG
ATCGCGTGTGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCAAACTGCCG
GAGCTGGGCGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTT
TTTGCACTGGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCT
ATACGGAATATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGC
GTGCACTCGGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAA
TCCGCCCAGGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGA
TGATCATCGGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACG
CACGGCACCTCCTCCTGTCACATCTCGCAGCGCAACATCAATCTGTCGAT
CGCCATGTACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGG
CGTACCTGGCGCCCGGTGGTCACAAGAGCCGGCGCATGGCCGCCTCCCTG
GCAGCCCAGAATGTGGTCAAGCAGTCGAGCAGCCCCCAGCAGGCCAGCGA
GAGCTCCAAGTTCATC
BS05029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3971-PA | 951 | Baldspot-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
CG3971-PB | 951 | Baldspot-RB | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Baldspot-RB | 2445 | CG3971-RB | 261..1160 | 17..916 | 4500 | 100 | Plus |
Baldspot-RA | 2784 | CG3971-RA | 201..1100 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16650126..16650587 | 916..455 | 2295 | 99.8 | Minus |
3L | 28110227 | 3L | 16659230..16659411 | 198..17 | 910 | 100 | Minus |
3L | 28110227 | 3L | 16651398..16651537 | 336..197 | 700 | 100 | Minus |
3L | 28110227 | 3L | 16651130..16651258 | 462..334 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:55:54 has no hits.
BS05029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:03 Download gff for
BS05029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3971-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:03 Download gff for
BS05029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3971-PB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:28 Download gff for
BS05029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 194..1100 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:30 Download gff for
BS05029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 194..1100 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:30 Download gff for
BS05029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16659230..16659418 | 9..198 | 97 | | Minus |
3L | 16651133..16651255 | 337..459 | 100 | <- | Minus |
3L | 16651398..16651535 | 199..336 | 100 | <- | Minus |
3L | 16650126..16650582 | 460..916 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:28 Download gff for
BS05029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16643226..16643682 | 460..916 | 100 | <- | Minus |
arm_3L | 16644233..16644355 | 337..459 | 100 | <- | Minus |
arm_3L | 16644498..16644635 | 199..336 | 100 | <- | Minus |
arm_3L | 16652330..16652518 | 9..198 | 97 | | Minus |
BS05029.complete Sequence
983 bp (983 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635043
> BS05029.complete
GAAGTTATCAGTCGACATGATCAACATGGACATTAGCGTTACGCCCAATT
ACTCGTACATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGC
AAATGGATGCTAGAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTA
CATGCTGGTCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGAT
TCCAATTGCGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTC
AGCATCATGGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCG
TCACTACGGACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAG
ATCGCGTGTGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCAAACTGCCG
GAGCTGGGCGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTT
TTTGCACTGGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCT
ATACGGAATATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGC
GTGCACTCGGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAA
TCCGCCCAGGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGA
TGATCATCGGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACG
CACGGCACCTCCTCCTGTCACATCTCGCAGCGCAACATCAATCTGTCGAT
CGCCATGTACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGG
CGTACCTGGCGCCCGGTGGTCACAAGAGCCGGCGCATGGCCGCCTCCCTG
GCAGCCCAGAATGTGGTCAAGCAGTCGAGCAGCCCCCAGCAGGCCAGCGA
GAGCTCCAAGTTCATCGGCGCTGGCGAGGATCAGGCAGCCTATCTGCGCA
AGGCCAAGGCGCAGTAAAAGCTTTCTAGACCAT
BS05029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Baldspot-RB | 951 | CG3971-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
Baldspot-RA | 951 | CG3971-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Baldspot-RB | 2445 | CG3971-RB | 261..1213 | 17..969 | 4765 | 100 | Plus |
Baldspot-RA | 2784 | CG3971-RA | 201..1153 | 17..969 | 4765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16650073..16650587 | 969..455 | 2560 | 99.8 | Minus |
3L | 28110227 | 3L | 16659230..16659411 | 198..17 | 910 | 100 | Minus |
3L | 28110227 | 3L | 16651398..16651537 | 336..197 | 700 | 100 | Minus |
3L | 28110227 | 3L | 16651130..16651258 | 462..334 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:55:23 has no hits.
BS05029.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:13 Download gff for
BS05029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RB | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:38 Download gff for
BS05029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RB | 266..1225 | 9..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:53 Download gff for
BS05029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 201..1149 | 17..965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:13 Download gff for
BS05029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RB | 266..1225 | 9..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:56 Download gff for
BS05029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Baldspot-RA | 201..1149 | 17..965 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:56 Download gff for
BS05029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16651398..16651535 | 199..336 | 100 | <- | Minus |
3L | 16659230..16659411 | 17..198 | 100 | | Minus |
3L | 16650077..16650582 | 460..965 | 100 | <- | Minus |
3L | 16651133..16651255 | 337..459 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:53 Download gff for
BS05029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16643177..16643682 | 460..965 | 100 | <- | Minus |
arm_3L | 16644233..16644355 | 337..459 | 100 | <- | Minus |
arm_3L | 16644498..16644635 | 199..336 | 100 | <- | Minus |
arm_3L | 16652330..16652511 | 17..198 | 100 | | Minus |
BS05029.pep Sequence
Translation from 16 to 966
> BS05029.pep
MINMDISVTPNYSYIFDFENDFIHQRTRKWMLENWTWVFYYCGIYMLVIF
GGQHFMQNRPRFQLRGPLIIWNTLLAMFSIMGAARTAPELIHVLRHYGLF
HSVCVPSYIEQDRVCGFWTWLFVLSKLPELGDTIFIVLRKQPLIFLHWYH
HITVLIYSWFSYTEYTSSARWFIVMNYCVHSVMYSYYALKAARFNPPRFI
SMIITSLQLAQMIIGCAINVWANGFLKTHGTSSCHISQRNINLSIAMYSS
YFVLFARFFYKAYLAPGGHKSRRMAASLAAQNVVKQSSSPQQASESSKFI
GAGEDQAAYLRKAKAQ*
BS05029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Baldspot-PB | 316 | CG3971-PB | 1..316 | 1..316 | 1696 | 100 | Plus |
Baldspot-PA | 316 | CG3971-PA | 1..316 | 1..316 | 1696 | 100 | Plus |
bond-PC | 322 | CG6921-PC | 50..309 | 52..310 | 204 | 25.5 | Plus |
bond-PA | 322 | CG6921-PA | 50..309 | 52..310 | 204 | 25.5 | Plus |
bond-PB | 322 | CG6921-PB | 50..309 | 52..310 | 204 | 25.5 | Plus |