Clone BS05030 Report

Search the DGRC for BS05030

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG6769-RA
Protein status:BS05030.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05030.3prime Sequence

861 bp (792 high quality bases) assembled on 2005-12-02

> BS05030.3prime
ATGGTCTAGAAAGCTTTTAGATCAGAACCTGTGCACGATAGTGCTTCTGC
AGCTTATTGGCCTTGCAGCCGAGCTTCATCTGCCACTTGGACTGGACGCG
CTTCATCAGATGAATGTCGCGTGCCTTGCGGGCGGCGGACAGCTGCTGCG
TTTGCGTCCAGCCCAGAGCCCGGTACTCGCTGAGCACGCGGTGCAGTTTG
CGGTCGGACTTCTTGATGACGACGGCGCGTTCCGGACGAAGACGCTGCTT
GTAGTAGCGAAGCAGGGAGCGATGACCAATGACCGCGCCTGAGGGCAGCA
CCAGCTGATACTCATCGCCATCGAGCAGATCCGGCACCACCTCTTCGTCA
ATGTCCATGCCCTCATTATTGTCCGGATAACTGCTGCTGTAGTCGTAGTA
TTCGGCATACTCGGCCAGCGCCACACCCTCGTGCAGCATCTGGCAGTGGC
CCTTGTCGATCATGTGTTTGCGCACGGCGTCCAGGGAATAGAAGGTCTTG
CCGCGATCGTTGCAGAACAGGCAGATGAAGTAGTTGGCCACCTTCTCGCC
CAGGTAGTACAGAAGGCCCTCGATGTCCGTGCAGTACTCGGTGTCCGGAA
TGAAGAACGAGTGCGCCACGGACATGTGCTTTAGGTTCTCCACCAGATCC
TCGCTGGCATGTGTGCAGAACAGGCAGTCGCGCTCGGTCAGCGGATTCTC
GGGTATCTTGTCCCACTCATCGGAATCCACCTCCTCCTCTTCAATGTCCT
CGAAATCATCGTCGTCCTCGTCGACCATCTCCTCGTCGTTATTGGCCTTG
ACCACCCGCTCCGCGAAGGCCAGTCGACCCTTGCCAGCGGCTGCGGCCGC
CAGGGCCGGAT

BS05030.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-PA 1230 CG6769-RA 386..1230 861..17 4200 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-RB 1543 CG6769-RB 548..1392 861..17 4210 99.9 Minus
CG6769-RA 1468 CG6769-RA 548..1392 861..17 4210 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17861836..17862200 732..368 1825 100 Minus
X 23542271 X 17862274..17862624 367..17 1755 100 Minus
X 23542271 X 17861549..17861681 861..729 650 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 18:11:11 has no hits.

BS05030.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:04 Download gff for BS05030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-PA 386..1230 17..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:04 Download gff for BS05030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-PA 386..1230 17..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:13 Download gff for BS05030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 548..1392 17..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:58 Download gff for BS05030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 548..1392 17..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:58 Download gff for BS05030.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17861549..17861679 731..861 99 -> Minus
X 17861838..17862200 368..730 100 -> Minus
X 17862274..17862624 17..367 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:13 Download gff for BS05030.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17755582..17755712 731..861 99 -> Minus
arm_X 17755871..17756233 368..730 100 -> Minus
arm_X 17756307..17756657 17..367 100   Minus

BS05030.5prime Sequence

905 bp (838 high quality bases) assembled on 2005-12-02

> BS05030.5prime
GAAGTTATCAGTCGACATGTCGCACTTCACCTGCCTGAACTGCGATGCCC
GCTTCGCCAGCGCGGATGTGCAGCGGAATCACTACAAGACCGACTGGCAT
CGCTACAATCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACGGCCGA
GGAGTTCCAGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGCGGCAC
TCGAGGAGCAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCCAATTC
GCCAGCCAGAAGGCGCACGACAACCACCTGAACAGCCGCAAGCACAAGGA
GCTGCTGGCCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGGCAGCG
CCAGCACCGCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGCGGCCC
CATCCGGCCCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCCTTCGC
GGAGCGGGTGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGAGGACG
ACGATGATTTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATGAGTGG
GACAAGATACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTCTGCAC
ACATGCCAGCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGTGGCGC
ACTCGTTCTTCATTCCGGACACCGAGTACTGCACGGACATCGAGGGCCTT
CTGTACTACCTGGGCGAGAAGGTGGCCAACTACTTCATCTGCCTGTTCTG
CAACGATCGCGGCAAGACCTTCTATTCCCTGGACGCCGTGCGCAAACACA
TGATCGACAAGGGCCACTGCCAGATGCTGCACGAGGGTGTGGCGCTGGCC
GAGTATGCCGAATACTACGACTACAGCAGCAGTTATCCGGACAATAATGA
GGGCA

BS05030.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-PA 1230 CG6769-RA 1..889 17..905 4445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-RB 1543 CG6769-RB 163..1051 17..905 4445 100 Plus
CG6769-RA 1468 CG6769-RA 163..1051 17..905 4445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17861164..17861681 17..534 2590 100 Plus
X 23542271 X 17861836..17862200 531..895 1825 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:07:09 has no hits.

BS05030.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:05 Download gff for BS05030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:06 Download gff for BS05030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:29:55 Download gff for BS05030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 152..1050 8..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:53 Download gff for BS05030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 152..1050 8..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:53 Download gff for BS05030.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17861153..17861679 8..532 99 -> Plus
X 17861838..17862205 533..904 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:29:55 Download gff for BS05030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17755186..17755712 8..532 99 -> Plus
arm_X 17755871..17756238 533..904 98   Plus

BS05030.complete Sequence

1262 bp (1262 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635044

> BS05030.complete
GAAGTTATCAGTCGACATGTCGCACTTCACCTGCCTGAACTGCGATGCCC
GCTTCGCCAGCGCGGATGTGCAGCGGAATCACTACAAGACCGACTGGCAT
CGCTACAATCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACGGCCGA
GGAGTTCCAGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGCGGCAC
TCGAGGAGCAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCCAATTC
GCCAGCCAGAAGGCGCACGACAACCACCTGAACAGCCGCAAGCACAAGGA
GCTGCTGGCCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGGCAGCG
CCAGCACCGCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGCGGCCC
CATCCGGCCCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCCTTCGC
GGAGCGGGTGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGAGGACG
ACGATGATTTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATGAGTGG
GACAAGATACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTCTGCAC
ACATGCCAGCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGTGGCGC
ACTCGTTCTTCATTCCGGACACCGAGTACTGCACGGACATCGAGGGCCTT
CTGTACTACCTGGGCGAGAAGGTGGCCAACTACTTCATCTGCCTGTTCTG
CAACGATCGCGGCAAGACCTTCTATTCCCTGGACGCCGTGCGCAAACACA
TGATCGACAAGGGCCACTGCCAGATGCTGCACGAGGGTGTGGCGCTGGCC
GAGTATGCCGAATACTACGACTACAGCAGCAGTTATCCGGACAATAATGA
GGGCATGGACATTGACGAAGAGGTGGTGCCGGATCTGCTCGATGGCGATG
AGTATCAGCTGGTGCTGCCCTCAGGCGCGGTCATTGGTCATCGCTCCCTG
CTTCGCTACTACAAGCAGCGTCTTCGTCCGGAACGCGCCGTCGTCATCAA
GAAGTCCGACCGCAAACTGCACCGCGTGCTCAGCGAGTACCGGGCTCTGG
GCTGGACGCAAACGCAGCAGCTGTCCGCCGCCCGCAAGGCACGCGACATT
CATCTGATGAAGCGCGTCCAGTCCAAGTGGCAGATGAAGCTCGGCTGCAA
GGCCAATAAGCTGCAGAAGCACTATCGTGCACAGGTTCTGATCTAAAAGC
TTTCTAGACCAT

BS05030.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-RB 1230 CG6769-PB 1..1230 17..1246 6150 100 Plus
CG6769-RA 1230 CG6769-PA 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-RB 1543 CG6769-RB 163..1392 17..1246 6150 100 Plus
CG6769-RA 1468 CG6769-RA 163..1392 17..1246 6150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17861164..17861681 17..534 2590 100 Plus
X 23542271 X 17861836..17862200 531..895 1825 100 Plus
X 23542271 X 17862274..17862624 896..1246 1755 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:51:25 has no hits.

BS05030.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:49 Download gff for BS05030.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 1..1230 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:05 Download gff for BS05030.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 226..1466 8..1246 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:49 Download gff for BS05030.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 163..1390 17..1244 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:49 Download gff for BS05030.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 226..1466 8..1246 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:41 Download gff for BS05030.complete
Subject Subject Range Query Range Percent Splice Strand
CG6769-RA 163..1390 17..1244 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:41 Download gff for BS05030.complete
Subject Subject Range Query Range Percent Splice Strand
X 17861164..17861679 17..532 100 -> Plus
X 17861838..17862200 533..895 100 -> Plus
X 17862274..17862622 896..1244 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:49 Download gff for BS05030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17755197..17755712 17..532 100 -> Plus
arm_X 17755871..17756233 533..895 100 -> Plus
arm_X 17756307..17756655 896..1244 100   Plus

BS05030.pep Sequence

Translation from 16 to 1245

> BS05030.pep
MSHFTCLNCDARFASADVQRNHYKTDWHRYNLKRRVAQLPPVTAEEFQQR
VLSARSATDAALEEQNLSVYCHACRRQFASQKAHDNHLNSRKHKELLARF
EREQMTASGGSASTATSVCTRSVVEQRPHPALAAAAAGKGRLAFAERVVK
ANNDEEMVDEDDDDFEDIEEEEVDSDEWDKIPENPLTERDCLFCTHASED
LVENLKHMSVAHSFFIPDTEYCTDIEGLLYYLGEKVANYFICLFCNDRGK
TFYSLDAVRKHMIDKGHCQMLHEGVALAEYAEYYDYSSSYPDNNEGMDID
EEVVPDLLDGDEYQLVLPSGAVIGHRSLLRYYKQRLRPERAVVIKKSDRK
LHRVLSEYRALGWTQTQQLSAARKARDIHLMKRVQSKWQMKLGCKANKLQ
KHYRAQVLI*

BS05030.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6769-PB 409 CG6769-PB 1..409 1..409 2163 100 Plus
CG6769-PA 409 CG6769-PA 1..409 1..409 2163 100 Plus