Clone Sequence Records
BS05030.3prime Sequence
861 bp (792 high quality bases) assembled on 2005-12-02
> BS05030.3prime
ATGGTCTAGAAAGCTTTTAGATCAGAACCTGTGCACGATAGTGCTTCTGC
AGCTTATTGGCCTTGCAGCCGAGCTTCATCTGCCACTTGGACTGGACGCG
CTTCATCAGATGAATGTCGCGTGCCTTGCGGGCGGCGGACAGCTGCTGCG
TTTGCGTCCAGCCCAGAGCCCGGTACTCGCTGAGCACGCGGTGCAGTTTG
CGGTCGGACTTCTTGATGACGACGGCGCGTTCCGGACGAAGACGCTGCTT
GTAGTAGCGAAGCAGGGAGCGATGACCAATGACCGCGCCTGAGGGCAGCA
CCAGCTGATACTCATCGCCATCGAGCAGATCCGGCACCACCTCTTCGTCA
ATGTCCATGCCCTCATTATTGTCCGGATAACTGCTGCTGTAGTCGTAGTA
TTCGGCATACTCGGCCAGCGCCACACCCTCGTGCAGCATCTGGCAGTGGC
CCTTGTCGATCATGTGTTTGCGCACGGCGTCCAGGGAATAGAAGGTCTTG
CCGCGATCGTTGCAGAACAGGCAGATGAAGTAGTTGGCCACCTTCTCGCC
CAGGTAGTACAGAAGGCCCTCGATGTCCGTGCAGTACTCGGTGTCCGGAA
TGAAGAACGAGTGCGCCACGGACATGTGCTTTAGGTTCTCCACCAGATCC
TCGCTGGCATGTGTGCAGAACAGGCAGTCGCGCTCGGTCAGCGGATTCTC
GGGTATCTTGTCCCACTCATCGGAATCCACCTCCTCCTCTTCAATGTCCT
CGAAATCATCGTCGTCCTCGTCGACCATCTCCTCGTCGTTATTGGCCTTG
ACCACCCGCTCCGCGAAGGCCAGTCGACCCTTGCCAGCGGCTGCGGCCGC
CAGGGCCGGAT
BS05030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-PA | 1230 | CG6769-RA | 386..1230 | 861..17 | 4200 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-RB | 1543 | CG6769-RB | 548..1392 | 861..17 | 4210 | 99.9 | Minus |
CG6769-RA | 1468 | CG6769-RA | 548..1392 | 861..17 | 4210 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17861836..17862200 | 732..368 | 1825 | 100 | Minus |
X | 23542271 | X | 17862274..17862624 | 367..17 | 1755 | 100 | Minus |
X | 23542271 | X | 17861549..17861681 | 861..729 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:11:11 has no hits.
BS05030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:04 Download gff for
BS05030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-PA | 386..1230 | 17..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:04 Download gff for
BS05030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-PA | 386..1230 | 17..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:13 Download gff for
BS05030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 548..1392 | 17..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:58 Download gff for
BS05030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 548..1392 | 17..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:58 Download gff for
BS05030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17861549..17861679 | 731..861 | 99 | -> | Minus |
X | 17861838..17862200 | 368..730 | 100 | -> | Minus |
X | 17862274..17862624 | 17..367 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:13 Download gff for
BS05030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17755582..17755712 | 731..861 | 99 | -> | Minus |
arm_X | 17755871..17756233 | 368..730 | 100 | -> | Minus |
arm_X | 17756307..17756657 | 17..367 | 100 | | Minus |
BS05030.5prime Sequence
905 bp (838 high quality bases) assembled on 2005-12-02
> BS05030.5prime
GAAGTTATCAGTCGACATGTCGCACTTCACCTGCCTGAACTGCGATGCCC
GCTTCGCCAGCGCGGATGTGCAGCGGAATCACTACAAGACCGACTGGCAT
CGCTACAATCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACGGCCGA
GGAGTTCCAGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGCGGCAC
TCGAGGAGCAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCCAATTC
GCCAGCCAGAAGGCGCACGACAACCACCTGAACAGCCGCAAGCACAAGGA
GCTGCTGGCCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGGCAGCG
CCAGCACCGCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGCGGCCC
CATCCGGCCCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCCTTCGC
GGAGCGGGTGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGAGGACG
ACGATGATTTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATGAGTGG
GACAAGATACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTCTGCAC
ACATGCCAGCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGTGGCGC
ACTCGTTCTTCATTCCGGACACCGAGTACTGCACGGACATCGAGGGCCTT
CTGTACTACCTGGGCGAGAAGGTGGCCAACTACTTCATCTGCCTGTTCTG
CAACGATCGCGGCAAGACCTTCTATTCCCTGGACGCCGTGCGCAAACACA
TGATCGACAAGGGCCACTGCCAGATGCTGCACGAGGGTGTGGCGCTGGCC
GAGTATGCCGAATACTACGACTACAGCAGCAGTTATCCGGACAATAATGA
GGGCA
BS05030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-PA | 1230 | CG6769-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-RB | 1543 | CG6769-RB | 163..1051 | 17..905 | 4445 | 100 | Plus |
CG6769-RA | 1468 | CG6769-RA | 163..1051 | 17..905 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17861164..17861681 | 17..534 | 2590 | 100 | Plus |
X | 23542271 | X | 17861836..17862200 | 531..895 | 1825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:07:09 has no hits.
BS05030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:05 Download gff for
BS05030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:06 Download gff for
BS05030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:29:55 Download gff for
BS05030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 152..1050 | 8..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:53 Download gff for
BS05030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 152..1050 | 8..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:53 Download gff for
BS05030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17861153..17861679 | 8..532 | 99 | -> | Plus |
X | 17861838..17862205 | 533..904 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:29:55 Download gff for
BS05030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17755186..17755712 | 8..532 | 99 | -> | Plus |
arm_X | 17755871..17756238 | 533..904 | 98 | | Plus |
BS05030.complete Sequence
1262 bp (1262 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635044
> BS05030.complete
GAAGTTATCAGTCGACATGTCGCACTTCACCTGCCTGAACTGCGATGCCC
GCTTCGCCAGCGCGGATGTGCAGCGGAATCACTACAAGACCGACTGGCAT
CGCTACAATCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACGGCCGA
GGAGTTCCAGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGCGGCAC
TCGAGGAGCAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCCAATTC
GCCAGCCAGAAGGCGCACGACAACCACCTGAACAGCCGCAAGCACAAGGA
GCTGCTGGCCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGGCAGCG
CCAGCACCGCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGCGGCCC
CATCCGGCCCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCCTTCGC
GGAGCGGGTGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGAGGACG
ACGATGATTTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATGAGTGG
GACAAGATACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTCTGCAC
ACATGCCAGCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGTGGCGC
ACTCGTTCTTCATTCCGGACACCGAGTACTGCACGGACATCGAGGGCCTT
CTGTACTACCTGGGCGAGAAGGTGGCCAACTACTTCATCTGCCTGTTCTG
CAACGATCGCGGCAAGACCTTCTATTCCCTGGACGCCGTGCGCAAACACA
TGATCGACAAGGGCCACTGCCAGATGCTGCACGAGGGTGTGGCGCTGGCC
GAGTATGCCGAATACTACGACTACAGCAGCAGTTATCCGGACAATAATGA
GGGCATGGACATTGACGAAGAGGTGGTGCCGGATCTGCTCGATGGCGATG
AGTATCAGCTGGTGCTGCCCTCAGGCGCGGTCATTGGTCATCGCTCCCTG
CTTCGCTACTACAAGCAGCGTCTTCGTCCGGAACGCGCCGTCGTCATCAA
GAAGTCCGACCGCAAACTGCACCGCGTGCTCAGCGAGTACCGGGCTCTGG
GCTGGACGCAAACGCAGCAGCTGTCCGCCGCCCGCAAGGCACGCGACATT
CATCTGATGAAGCGCGTCCAGTCCAAGTGGCAGATGAAGCTCGGCTGCAA
GGCCAATAAGCTGCAGAAGCACTATCGTGCACAGGTTCTGATCTAAAAGC
TTTCTAGACCAT
BS05030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-RB | 1230 | CG6769-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
CG6769-RA | 1230 | CG6769-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-RB | 1543 | CG6769-RB | 163..1392 | 17..1246 | 6150 | 100 | Plus |
CG6769-RA | 1468 | CG6769-RA | 163..1392 | 17..1246 | 6150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17861164..17861681 | 17..534 | 2590 | 100 | Plus |
X | 23542271 | X | 17861836..17862200 | 531..895 | 1825 | 100 | Plus |
X | 23542271 | X | 17862274..17862624 | 896..1246 | 1755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:51:25 has no hits.
BS05030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:49 Download gff for
BS05030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:05 Download gff for
BS05030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 226..1466 | 8..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:49 Download gff for
BS05030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 163..1390 | 17..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:49 Download gff for
BS05030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 226..1466 | 8..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:41 Download gff for
BS05030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6769-RA | 163..1390 | 17..1244 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:41 Download gff for
BS05030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17861164..17861679 | 17..532 | 100 | -> | Plus |
X | 17861838..17862200 | 533..895 | 100 | -> | Plus |
X | 17862274..17862622 | 896..1244 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:49 Download gff for
BS05030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17755197..17755712 | 17..532 | 100 | -> | Plus |
arm_X | 17755871..17756233 | 533..895 | 100 | -> | Plus |
arm_X | 17756307..17756655 | 896..1244 | 100 | | Plus |
BS05030.pep Sequence
Translation from 16 to 1245
> BS05030.pep
MSHFTCLNCDARFASADVQRNHYKTDWHRYNLKRRVAQLPPVTAEEFQQR
VLSARSATDAALEEQNLSVYCHACRRQFASQKAHDNHLNSRKHKELLARF
EREQMTASGGSASTATSVCTRSVVEQRPHPALAAAAAGKGRLAFAERVVK
ANNDEEMVDEDDDDFEDIEEEEVDSDEWDKIPENPLTERDCLFCTHASED
LVENLKHMSVAHSFFIPDTEYCTDIEGLLYYLGEKVANYFICLFCNDRGK
TFYSLDAVRKHMIDKGHCQMLHEGVALAEYAEYYDYSSSYPDNNEGMDID
EEVVPDLLDGDEYQLVLPSGAVIGHRSLLRYYKQRLRPERAVVIKKSDRK
LHRVLSEYRALGWTQTQQLSAARKARDIHLMKRVQSKWQMKLGCKANKLQ
KHYRAQVLI*
BS05030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6769-PB | 409 | CG6769-PB | 1..409 | 1..409 | 2163 | 100 | Plus |
CG6769-PA | 409 | CG6769-PA | 1..409 | 1..409 | 2163 | 100 | Plus |