Clone BS05034 Report

Search the DGRC for BS05034

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptslgA-RA
Protein status:BS05034.pep: full length peptide match
Sequenced Size:2042

Clone Sequence Records

BS05034.3prime Sequence

914 bp (805 high quality bases) assembled on 2005-12-02

> BS05034.3prime
ATGGTCTAGAAAGCTTTTAGATGGGCACGTAATTGCCCTTGGGCTTGTAG
AACAACTGGCCACGCATCAGACGGCGCCGAATCTCGGAGAGCAGCAGGCG
TTTTTCCTTCTTGATCTTCTTGAGCACACCCTTGTTCTCCTGGGCACGAC
GAGACAAGTAGGGCAGCACCTCTTCGACTGGGCCATATGGTATGTACTTG
TACGCCGAGTATCCCGCTTGACCCAGTGGAAAGGTAATGTAGTCGCACAT
GCCCAGCAGTTGGCCGAAGCAGATCACCTTGTCCTCCGGTGAGATGCCGA
TCTCCTTCATCTGCTGGATGGCAAATCGTACGGTGTCTTCGTTGTGCGAG
GCCACCATAATACCAATCTTCCTGGCATCGTCATCACAGTCCTTCATCAG
CTTAATGCGTCGCAAGCACTCCGACAACGTCCTGTGATACATGTCCGTGG
TGGCCTCGAACGTGGGATTTACCGGATCCGGGTAGCCCAGCGACTTGGCA
CGGTCCCGCTCCTGGTCCATATAGGCACCGCGCACCAGCTTGGCGCCGAA
GTAGAAGTTCTGGCGCTTGGCCTGCTCCAGATCGGTGTTCACCTCGCGGA
ACGTCTCGCGCAGATAGCACTGGTACGTATTAAAGACAATGGCCTTGTCC
TTGTTGTACTTGCGCATCATTTCCAGGGTGATACGGGAGATGGCCGGCTG
GAAGTAAGTCTGCTCCGCATCCACCATGATACGCACATCCAAGTCCGCAG
CAGCCTTTACAATCGTGTTGAGACGACGGATCATGTTCCTGAACATCTCC
TCCTCCTTGGGCGGTATTTGTGAGATCAGTCGACGCATCTGTCCGGTTTG
GGGATCGGGAACGCGAAACGTGTCGCTCAGCTGCGAGTCCTCGTCAACAT
GCCCGACCAGGGGA

BS05034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1417-PC 1071 slgA-RC 189..1071 899..17 4390 99.8 Minus
CG1417-PF 2010 slgA-RF 1128..2010 899..17 4390 99.8 Minus
CG1417-PG 2010 slgA-RG 1128..2010 899..17 4390 99.8 Minus
CG1417-PH 2010 slgA-RH 1128..2010 899..17 4390 99.8 Minus
CG1417-PA 2010 slgA-RA 1128..2010 899..17 4390 99.8 Minus
CG1417-PD 2046 slgA-RD 1164..2046 899..17 4390 99.8 Minus
CG1417-PE 2046 slgA-RE 1164..2046 899..17 4390 99.8 Minus
CG1417-PB 2010 slgA-RB 1128..2010 899..17 4390 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-RN 3457 CG1417-RN 1305..2203 914..17 4455 99.8 Minus
slgA-RM 2551 CG1417-RM 1269..2167 914..17 4455 99.8 Minus
slgA-RL 3359 CG1417-RL 1207..2105 914..17 4455 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21383028..21383383 756..401 1780 100 Minus
X 23542271 X 21383699..21383905 223..17 1035 100 Minus
X 23542271 X 21383448..21383630 402..220 915 100 Minus
X 23542271 X 21382808..21382969 914..754 745 98.8 Minus
Blast to na_te.dros performed on 2015-02-11 17:58:23 has no hits.

BS05034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:09 Download gff for BS05034.3prime
Subject Subject Range Query Range Percent Splice Strand
slgA-PE 1149..2046 17..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:12 Download gff for BS05034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1417-PB 1113..2010 17..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:55:02 Download gff for BS05034.3prime
Subject Subject Range Query Range Percent Splice Strand
slgA-RL 1208..2108 12..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:23 Download gff for BS05034.3prime
Subject Subject Range Query Range Percent Splice Strand
slgA-RL 1208..2108 12..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:23 Download gff for BS05034.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21382809..21382968 755..913 98 -> Minus
X 21383030..21383383 401..754 100 -> Minus
X 21383450..21383627 223..400 100 -> Minus
X 21383700..21383908 12..222 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:55:02 Download gff for BS05034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21253836..21253995 755..913 98 -> Minus
arm_X 21254057..21254410 401..754 100 -> Minus
arm_X 21254477..21254654 223..400 100 -> Minus
arm_X 21254727..21254935 12..222 99   Minus

BS05034.5prime Sequence

889 bp (865 high quality bases) assembled on 2005-12-02

> BS05034.5prime
GAAGTTATCAGTCGACATGGCTCTACTCCGTTCGCTGAGCGCCCAACGAA
CAGCCATCAGTTTGGTCTACGGCCGTAATAGCAGCAAGTCGAGCAATTCC
GTGGCCGTCGCCGCCTGCCGGAGTTTCCATCAGCGCGGCAGCGGGAGCAC
CAGCATCGCCGGAGAAGGAGCAGCATCGGAGTCCACGAGAGGAGTCAATG
GAGCGCGCTTCCTGCACAGCGGCGACCGGCCGCTGCAGGCCTCCACTCTG
GTCCAACCGGAGGTGGTCTCCAGCGAGACGGTGAAGCGATCGATGAAGCA
GGAGTCGTCCCAGGAAAAGAACCCCTCGCCCGCTGGCTCGCCGCAGAGGG
ATCCCCTGGACGTGAGCTTTAATGATCCGATTGCTGCTTTCAAGAGCAAG
ACCACTGGAGAGCTAATACGCGCCTATCTCGTCTACATGATATGTTCCAG
CGAGAAGCTGGTCGAGCACAACATGACGCTTATGAAATGGTCAAAGAACG
TATTGGGTCAACGGTTATTTACATTATTGATGAAGGCGACCTTCTATGGC
CACTTTGTCGCCGGCGAGGATCAGATCAAGATCATACCCACACTGGAAAG
GCTAAGATCCTTTGGCGTTAAGCCGATTCTCGATTATTCCGTTGAGGAGG
ATATCACCCAGGAGGAGGCCGAGAAACGTGAAGTTGAATCTTCCGTCTCC
AGTGCAGGCGACAAAAAGGAGGAGGGCAGCATGCCGCAGTACCATGTGGA
CAAGTCCTTTGCGGATCGGCGCTACAAGGTCAGCAGTGCTCGCACCTACT
TCTACTTGAACGAGGCCACCTGCGAGCGGAACATGGAGATCTTCATCAAG
TGTCTGGAGGCTGTTTCGGGCGCCACCTTTGGAACTGGC

BS05034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1417-PF 2010 slgA-RF 1..873 17..889 4365 100 Plus
CG1417-PG 2010 slgA-RG 1..873 17..889 4365 100 Plus
CG1417-PH 2010 slgA-RH 1..873 17..889 4365 100 Plus
CG1417-PA 2010 slgA-RA 1..873 17..889 4365 100 Plus
CG1417-PE 2046 slgA-RE 1..853 17..869 4265 100 Plus
CG1417-PB 2010 slgA-RB 1..471 17..487 2330 99.7 Plus
CG1417-PD 2046 slgA-RD 1..471 17..487 2330 99.7 Plus
CG1417-PB 2010 slgA-RB 583..873 599..889 1455 100 Plus
CG1417-PD 2046 slgA-RD 583..853 599..869 1355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-RL 3359 CG1417-RL 96..968 17..889 4365 100 Plus
slgA-RK 3404 CG1417-RK 141..1013 17..889 4365 100 Plus
slgA-RJ 3472 CG1417-RJ 209..1081 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21376205..21376666 17..478 2310 100 Plus
X 23542271 X 21380882..21381064 688..870 915 100 Plus
X 23542271 X 21379587..21379710 478..601 620 100 Plus
X 23542271 X 21380649..21380737 599..687 445 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:15:33 has no hits.

BS05034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:10 Download gff for BS05034.5prime
Subject Subject Range Query Range Percent Splice Strand
slgA-PG 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:13 Download gff for BS05034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1417-PF 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:16:36 Download gff for BS05034.5prime
Subject Subject Range Query Range Percent Splice Strand
slgA-RJ 217..1092 11..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:43 Download gff for BS05034.5prime
Subject Subject Range Query Range Percent Splice Strand
slgA-RJ 206..1081 11..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:43 Download gff for BS05034.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21376202..21376666 11..478 99 -> Plus
X 21379588..21379709 479..600 100 -> Plus
X 21380651..21380737 601..687 100 -> Plus
X 21380882..21381063 688..869 100 -> Plus
X 21382180..21382199 870..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:16:36 Download gff for BS05034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21247229..21247693 11..478 99 -> Plus
arm_X 21250615..21250736 479..600 100 -> Plus
arm_X 21251678..21251764 601..687 100 -> Plus
arm_X 21251909..21252090 688..869 100 -> Plus
arm_X 21253207..21253226 870..889 100   Plus

BS05034.complete Sequence

2042 bp assembled on 2009-12-07

GenBank Submission: KX793834

> BS05034.complete
GAAGTTATCAGTCGACATGGCTCTACTCCGTTCGCTGAGCGCCCAACGAA
CAGCCATCAGTTTGGTCTACGGCCGTAATAGCAGCAAGTCGAGCAATTCC
GTGGCCGTCGCCGCCTGCCGGAGTTTCCATCAGCGCGGCAGCGGGAGCAC
CAGCATCGCCGGAGAAGGAGCAGCATCGGAGTCCACGAGAGGAGTCAATG
GAGCGCGCTTCCTGCACAGCGGCGACCGGCCGCTGCAGGCCTCCACTCTG
GTCCAACCGGAGGTGGTCTCCAGCGAGACGGTGAAGCGATCGATGAAGCA
GGAGTCGTCCCAGGAAAAGAACCCCTCGCCCGCTGGCTCGCCGCAGAGGG
ATCCCCTGGACGTGAGCTTTAATGATCCGATTGCTGCTTTCAAGAGCAAG
ACCACTGGAGAGCTAATACGCGCCTATCTCGTCTACATGATATGTTCCAG
CGAGAAGCTGGTCGAGCACAACATGACGCTTATGAAATGGTCAAAGAACG
TATTGGGTCAACGGTTATTTACATTATTGATGAAGGCGACCTTCTATGGC
CACTTTGTCGCCGGCGAGGATCAGATCAAGATCATACCCACACTGGAAAG
GCTAAGATCCTTTGGCGTTAAGCCGATTCTCGATTATTCCGTTGAGGAGG
ATATCACCCAGGAGGAGGCCGAGAAACGTGAAGTTGAATCTTCCGTCTCC
AGTGCAGGCGACAAAAAGGAGGAGGGCAGCATGCCGCAGTACCATGTGGA
CAAGTCCTTTGCGGATCGGCGCTACAAGGTCAGCAGTGCTCGCACCTACT
TCTACTTGAACGAGGCCACCTGCGAGCGGAACATGGAGATCTTCATCAAG
TGTCTGGAGGCTGTTTCGGGCGCCACCTTTGGAACTGGCATCACCGCCAT
TAAACTCACCGCCCTGGGCCGTCCACAATTGCTGCTGCAACTGTCCGAGG
TAATCATGCGCACACGCAAGTACATGGAGGATATGGTGGGCGGTCAGGGC
AATGTGCTGACTCACCACAAGACCATCAAGGATCTCGAAAAGTATTACGC
CACGCTGGGCGACAATAAGGACGTCAAGGAGTTCCTGAACAATGTAACGT
CCGATAAGGAGGGAATTTTGCATTTGTTCCCCTGGTCGGGCATTGTTGAC
GAGGACTCGCAGCTGAGCGACACGTTCCGCGTTCCCGATCCCCAAACCGG
ACAGATGCGTCGACTGATCTCACAAATACCGCCCAAGGAGGAGGAGATGT
TCAGGAACATGATCCGTCGTCTCAACACGATTGTAAAGGCTGCTGCGGAC
TTGGATGTGCGTATCATGGTGGATGCGGAGCAGACTTACTTCCAGCCGGC
CATCTCCCGTATCACCCTGGAAATGATGCGCAAGTACAACAAGGACAAGG
CCATTGTCTTTAATACGTACCAGTGCTATCTGCGCGAGACGTTCCGCGAG
GTGAACACCGATCTGGAGCAGGCCAAGCGCCAGAACTTCTACTTCGGCGC
CAAGCTGGTGCGCGGTGCCTATATGGACCAGGAGCGGGACCGTGCCAAGT
CGCTGGGCTACCCGGATCCGGTAAATCCCACGTTCGAGGCCACCACGGAC
ATGTATCACAGGACGTTGTCGGAGTGCTTGCGACGCATTAAGCTGATGAA
GGACTGTGATGACGATGCCAGGAAGATTGGTATTATGGTGGCCTCGCACA
ACGAAGACACCGTACGATTTGCCATCCAGCAGATGAAGGAGATCGGCATC
TCACCGGAGGACAAGGTGATCTGCTTCGGCCAACTGCTGGGCATGTGCGA
CTACATTACCTTTCCACTGGGTCAAGCGGGATACTCGGCGTACAAGTACA
TACCATATGGCCCAGTCGAAGAGGTGCTGCCCTACTTGTCTCGTCGTGCC
CAGGAGAACAAGGGTGTGCTCAAGAAGATCAAGAAGGAAAAACGCCTGCT
GCTCTCCGAGATTCGGCGCCGTCTGATGCGTGGCCAGTTGTTCTACAAGC
CCAAGGGCAATTACGTGCCCATCTAAAAGCTTTCTAGACCAT

BS05034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-RL 2010 CG1417-PL 1..2010 17..2026 10050 100 Plus
slgA-RK 2010 CG1417-PK 1..2010 17..2026 10050 100 Plus
slgA-RJ 2010 CG1417-PJ 1..2010 17..2026 10050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-RL 3359 CG1417-RL 96..2105 17..2026 10050 100 Plus
slgA-RK 3404 CG1417-RK 141..2150 17..2026 10050 100 Plus
slgA-RJ 3472 CG1417-RJ 209..2218 17..2026 10050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21376205..21376666 17..478 2310 100 Plus
X 23542271 X 21383028..21383383 1287..1642 1780 100 Plus
X 23542271 X 21383699..21383905 1820..2026 1035 100 Plus
X 23542271 X 21380882..21381064 688..870 915 100 Plus
X 23542271 X 21383448..21383630 1641..1823 915 100 Plus
X 23542271 X 21382543..21382727 929..1113 910 99.5 Plus
X 23542271 X 21382793..21382969 1113..1289 885 100 Plus
X 23542271 X 21379587..21379710 478..601 620 100 Plus
X 23542271 X 21380649..21380737 599..687 445 100 Plus
X 23542271 X 21382179..21382244 869..934 330 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:06:51 has no hits.

BS05034.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:48 Download gff for BS05034.complete
Subject Subject Range Query Range Percent Splice Strand
slgA-RG 156..2163 17..2024 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:14 Download gff for BS05034.complete
Subject Subject Range Query Range Percent Splice Strand
slgA-RJ 220..2227 17..2024 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:11 Download gff for BS05034.complete
Subject Subject Range Query Range Percent Splice Strand
slgA-RG 156..2163 17..2024 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:44 Download gff for BS05034.complete
Subject Subject Range Query Range Percent Splice Strand
slgA-RJ 209..2216 17..2024 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:44 Download gff for BS05034.complete
Subject Subject Range Query Range Percent Splice Strand
X 21382549..21382727 935..1113 100 -> Plus
X 21382794..21382968 1114..1288 100 -> Plus
X 21383450..21383627 1643..1820 100 -> Plus
X 21383700..21383903 1821..2024 100   Plus
X 21383030..21383383 1289..1642 100 -> Plus
X 21376205..21376666 17..478 100 -> Plus
X 21379588..21379709 479..600 100 -> Plus
X 21380651..21380737 601..687 100 -> Plus
X 21380882..21381063 688..869 100 -> Plus
X 21382180..21382244 870..934 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:14 Download gff for BS05034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21253576..21253754 935..1113 100 -> Plus
arm_X 21253821..21253995 1114..1288 100 -> Plus
arm_X 21251909..21252090 688..869 100 -> Plus
arm_X 21253207..21253271 870..934 100 -> Plus
arm_X 21251678..21251764 601..687 100 -> Plus
arm_X 21247232..21247693 17..478 100 -> Plus
arm_X 21250615..21250736 479..600 100 -> Plus
arm_X 21254057..21254410 1289..1642 100 -> Plus
arm_X 21254477..21254654 1643..1820 100 -> Plus
arm_X 21254727..21254930 1821..2024 100   Plus

BS05034.pep Sequence

Translation from 16 to 2025

> BS05034.pep
MALLRSLSAQRTAISLVYGRNSSKSSNSVAVAACRSFHQRGSGSTSIAGE
GAASESTRGVNGARFLHSGDRPLQASTLVQPEVVSSETVKRSMKQESSQE
KNPSPAGSPQRDPLDVSFNDPIAAFKSKTTGELIRAYLVYMICSSEKLVE
HNMTLMKWSKNVLGQRLFTLLMKATFYGHFVAGEDQIKIIPTLERLRSFG
VKPILDYSVEEDITQEEAEKREVESSVSSAGDKKEEGSMPQYHVDKSFAD
RRYKVSSARTYFYLNEATCERNMEIFIKCLEAVSGATFGTGITAIKLTAL
GRPQLLLQLSEVIMRTRKYMEDMVGGQGNVLTHHKTIKDLEKYYATLGDN
KDVKEFLNNVTSDKEGILHLFPWSGIVDEDSQLSDTFRVPDPQTGQMRRL
ISQIPPKEEEMFRNMIRRLNTIVKAAADLDVRIMVDAEQTYFQPAISRIT
LEMMRKYNKDKAIVFNTYQCYLRETFREVNTDLEQAKRQNFYFGAKLVRG
AYMDQERDRAKSLGYPDPVNPTFEATTDMYHRTLSECLRRIKLMKDCDDD
ARKIGIMVASHNEDTVRFAIQQMKEIGISPEDKVICFGQLLGMCDYITFP
LGQAGYSAYKYIPYGPVEEVLPYLSRRAQENKGVLKKIKKEKRLLLSEIR
RRLMRGQLFYKPKGNYVPI*

BS05034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-PL 669 CG1417-PL 1..669 1..669 3425 100 Plus
slgA-PK 669 CG1417-PK 1..669 1..669 3425 100 Plus
slgA-PJ 669 CG1417-PJ 1..669 1..669 3425 100 Plus
slgA-PA 669 CG1417-PA 1..669 1..669 3425 100 Plus
slgA-PH 669 CG1417-PH 1..669 1..669 3425 100 Plus