Clone Sequence Records
BS05037.3prime Sequence
914 bp (842 high quality bases) assembled on 2005-12-02
> BS05037.3prime
ATGGTCTAGAAAGCTTTTAATCGTCCTCCAGCAGAGCAAACACGTTCCGA
GACCTGGGTGCGTCTTCCCTGATGCCACATTCCTCCTCATCAGCATTGGT
CTCGTCATTGGAGCTGTCCTCGTCTTCATCCTCGCTGTCGGCAGTATCCG
AGCAGACGGATGATGTGTCGCCGTTGGTCTCGCTCTCCGGCTCATCTAAT
TCGACTTGCTGGTACTTCTTGACCTCCCCCACATCGGGATGTTGGAGCCA
GTGCTCACGTCGCTCCTCAAATCCGGGCGGATAAAACTGCAATACCAACA
TCTGTTGGCCGGCCAGGCACATGCGAAGGATATGATTCGCGGCCCGGTAG
CGATCCGGCCTGGCTGCCTTGGCGGTGAGGAATCCCCTCTTATATGCCCA
AGCATCGGAGATGGCCACCGCAGACCACTCATCGTAATCCTCGGGCAGGT
GGAGACGCAGAAGCTGTGGTAGATTCAGATGTTCGCCGAGAAACTTCAGG
GAGCGGTATGGAACAGCCAGTTGCGATATGGGGAAACTGCCCAGCAGCAC
TTGCAGGCTTTTGGGAGTACTCGAGGGAAAGACTAGACCGGGACAATCAC
AGAGGCGAACAAGTGGGGTGAGGAAAATTGTCTGAAAGTGCTTCGTATGT
CCGGGCGTGCGACTAACGCTGACCACCTTGCGTCCCTTTAAGGCATTGAT
CAGCGACGACTTTCCGACATTGGGAAATCCAATGCAGCCAATGGTCAGGA
CCCCACTGTGATATTTAACGTGCTCGTGGGGCGTGGTGTCGATGCTGCTG
CTGATCTTGAGTTCACCCTCCACGGCCGTTGATATTTCATCCAGGATGTC
AAGCTGATCACTACGCATGTCCTCTCGTATCTTCTGCTCCCAGGTTGTTA
GATCCACCTTCTCT
BS05037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9320-PA | 1728 | CG9320-RA | 836..1728 | 909..17 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-RA | 1961 | CG9320-RA | 972..1867 | 909..14 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20753601..20754365 | 909..145 | 3825 | 100 | Minus |
2L | 23513712 | 2L | 20754431..20754561 | 144..14 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:14:37 has no hits.
BS05037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:11 Download gff for
BS05037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-PA | 831..1728 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:14 Download gff for
BS05037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-PA | 831..1728 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:05:23 Download gff for
BS05037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 967..1869 | 11..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:02 Download gff for
BS05037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 967..1869 | 11..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:02 Download gff for
BS05037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20754431..20754563 | 11..144 | 99 | | Minus |
2L | 20753596..20754365 | 145..914 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:05:23 Download gff for
BS05037.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20753596..20754365 | 145..914 | 99 | -> | Minus |
arm_2L | 20754431..20754563 | 11..144 | 99 | | Minus |
BS05037.5prime Sequence
875 bp (757 high quality bases) assembled on 2005-12-02
> BS05037.5prime
GAAGTTATCAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCG
GCAAGAAGAAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCC
CCAAAGTATCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCC
GGAAACGACCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACC
GAAACAAGAACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAA
AAGGAACTGGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACT
CAGTCCCGCTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACT
TCCCAGTTCGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGAT
CGCACCGAGAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAA
GCAGCGTGCTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGG
AAACCTGGCGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTG
ATCATTGTGGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTA
CGACTATATTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACA
AGGTGGATCTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTC
CGCGACCGTTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCC
CCGATCCCGCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCAGGAGTA
TGGAAGGAGTGTATAATATCTACAAGGAATGCCAGCGCTATGTCCAAGGA
GAGGTGGATCTAACAACCTGGGAGC
BS05037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9320-PA | 1728 | CG9320-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-RA | 1961 | CG9320-RA | 137..995 | 17..875 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20753172..20753624 | 423..875 | 2265 | 100 | Plus |
2L | 23513712 | 2L | 20752779..20753110 | 94..425 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 20752612..20752692 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:05:08 has no hits.
BS05037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:12 Download gff for
BS05037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:16 Download gff for
BS05037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:29:25 Download gff for
BS05037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 137..995 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:41 Download gff for
BS05037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 137..995 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:41 Download gff for
BS05037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20752612..20752690 | 17..95 | 100 | -> | Plus |
2L | 20752781..20753109 | 96..424 | 100 | -> | Plus |
2L | 20753174..20753624 | 425..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:29:25 Download gff for
BS05037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20752612..20752690 | 17..95 | 100 | -> | Plus |
arm_2L | 20752781..20753109 | 96..424 | 100 | -> | Plus |
arm_2L | 20753174..20753624 | 425..875 | 100 | | Plus |
BS05037.complete Sequence
1760 bp assembled on 2007-10-26
GenBank Submission: FJ635045
> BS05037.complete
GAAGTTATCAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCG
GCAAGAAGAAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCC
CCAAAGTATCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCC
GGAAACGACCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACC
GAAACAAGAACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAA
AAGGAACTGGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACT
CAGTCCCGCTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACT
TCCCAGTTCGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGAT
CGCACCGAGAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAA
GCAGCGTGCTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGG
AAACCTGGCGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTG
ATCATTGTGGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTA
CGACTATATTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACA
AGGTGGATCTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTC
CGCGACCGTTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCC
CCGATCCCGCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCAGGAGTA
TGGAAGGAGTGTATAATATCTACAAGGAATGCCAGCGCTATGTCCAAGGA
GAGGTGGATCTAACAACCTGGGAGCAGAAGATACGAGAGGACATGCGTAG
TGATCAGCTTGACATCCTGGATGAAATATCAACGGCCGTGGAGGGTGAAC
TCAAGATCAGCAGCAGCATCGACACCACGCCCCACGAGCACGTTAAATAT
CACAGTGGGGTCCTGACCATTGGCTGCATTGGATTTCCCAATGTCGGAAA
GTCGTCGCTGATCAATGCCTTAAAGGGACGCAAGGTGGTCAGCGTTAGTC
GCACGCCCGGACATACGAAGCACTTTCAGACAATTTTCCTCACCCCACTT
GTTCGCCTCTGTGATTGTCCCGGTCTAGTCTTTCCCTCGAGTACTCCCAA
AAGCCTGCAAGTGCTGCTGGGCAGTTTCCCCATATCGCAACTGGCTGTTC
CATACCGCTCCCTGAAGTTTCTCGGCGAACATCTGAATCTACCACAGCTT
CTGCGTCTCCACCTGCCCGAGGATTACGATGAGTGGTCTGCGGTGGCCAT
CTCCGATGCTTGGGCATATAAGAGGGGATTCCTCACCGCCAAGGCAGCCA
GGCCGGATCGCTACCGGGCCGCGAATCATATCCTTCGCATGTGCCTGGCC
GGCCAACAGATGTTGGTATTGCAGTTTTATCCGCCCGGATTTGAGGAGCG
ACGTGAGCACTGGCTCCAACATCCCGATGTGGGGGAGGTCAAGAAGTACC
AGCAAGTCGAATTAGATGAGCCGGAGAGCGAGACCAACGGCGACACATCA
TCCGTCTGCTCGGATACTGCCGACAGCGAGGATGAAGACGAGGACAGCTC
CAATGACGAGACCAATGCTGATGAGGAGGAATGTGGCATCAGGGAAGACG
CACCCAGGTCTCGGAACGTGTTTGCTCTGCTGGAGGACGATTAAAAGCTT
TCTAGACCAT
BS05037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-RA | 1728 | CG9320-PA | 1..1728 | 17..1744 | 8640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-RA | 1961 | CG9320-RA | 137..1867 | 17..1747 | 8655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20753172..20754365 | 423..1616 | 5970 | 100 | Plus |
2L | 23513712 | 2L | 20752779..20753110 | 94..425 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 20754431..20754561 | 1617..1747 | 655 | 100 | Plus |
2L | 23513712 | 2L | 20752612..20752692 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:08:07 has no hits.
BS05037.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:27 Download gff for
BS05037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-RA | 1..1728 | 17..1744 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:31 Download gff for
BS05037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-RA | 213..1945 | 17..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:56 Download gff for
BS05037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 137..1862 | 17..1742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:07 Download gff for
BS05037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9320-RA | 213..1938 | 17..1742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:15 Download gff for
BS05037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns4-RA | 137..1862 | 17..1742 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:15 Download gff for
BS05037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20752612..20752690 | 17..95 | 100 | -> | Plus |
2L | 20752781..20753109 | 96..424 | 100 | -> | Plus |
2L | 20753174..20754365 | 425..1616 | 100 | -> | Plus |
2L | 20754431..20754556 | 1617..1742 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:56 Download gff for
BS05037.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20752612..20752690 | 17..95 | 100 | -> | Plus |
arm_2L | 20752781..20753109 | 96..424 | 100 | -> | Plus |
arm_2L | 20753174..20754365 | 425..1616 | 100 | -> | Plus |
arm_2L | 20754431..20754556 | 1617..1742 | 100 | | Plus |
BS05037.pep Sequence
Translation from 16 to 1743
> BS05037.pep
MPQQRRKVAFSGKKKKDQMLQKRNTKGPPKYLRSTQESYEDSDVPETTRK
LMEQPFARGGNRNKNVNRYNLQFYQEGKKELEQMKQEGFKPFEKLSPAQR
EVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQRAGD
SKELSLFELNLETWRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYIIN
TLKKHAIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLPRSRKG
SQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDI
LDEISTAVEGELKISSSIDTTPHEHVKYHSGVLTIGCIGFPNVGKSSLIN
ALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPSSTPKSLQVL
LGSFPISQLAVPYRSLKFLGEHLNLPQLLRLHLPEDYDEWSAVAISDAWA
YKRGFLTAKAARPDRYRAANHILRMCLAGQQMLVLQFYPPGFEERREHWL
QHPDVGEVKKYQQVELDEPESETNGDTSSVCSDTADSEDEDEDSSNDETN
ADEEECGIREDAPRSRNVFALLEDD*
BS05037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns4-PA | 575 | CG9320-PA | 1..575 | 1..575 | 3034 | 100 | Plus |
Ns3-PB | 606 | CG14788-PB | 115..510 | 113..498 | 392 | 32.4 | Plus |
Ns3-PA | 606 | CG14788-PA | 115..510 | 113..498 | 392 | 32.4 | Plus |
Ns1-PA | 581 | CG3983-PA | 121..424 | 140..494 | 177 | 24.2 | Plus |
Ns2-PA | 674 | CG6501-PA | 316..509 | 333..540 | 174 | 28.1 | Plus |