Clone BS05037 Report

Search the DGRC for BS05037

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptNs4-RA
Protein status:BS05037.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05037.3prime Sequence

914 bp (842 high quality bases) assembled on 2005-12-02

> BS05037.3prime
ATGGTCTAGAAAGCTTTTAATCGTCCTCCAGCAGAGCAAACACGTTCCGA
GACCTGGGTGCGTCTTCCCTGATGCCACATTCCTCCTCATCAGCATTGGT
CTCGTCATTGGAGCTGTCCTCGTCTTCATCCTCGCTGTCGGCAGTATCCG
AGCAGACGGATGATGTGTCGCCGTTGGTCTCGCTCTCCGGCTCATCTAAT
TCGACTTGCTGGTACTTCTTGACCTCCCCCACATCGGGATGTTGGAGCCA
GTGCTCACGTCGCTCCTCAAATCCGGGCGGATAAAACTGCAATACCAACA
TCTGTTGGCCGGCCAGGCACATGCGAAGGATATGATTCGCGGCCCGGTAG
CGATCCGGCCTGGCTGCCTTGGCGGTGAGGAATCCCCTCTTATATGCCCA
AGCATCGGAGATGGCCACCGCAGACCACTCATCGTAATCCTCGGGCAGGT
GGAGACGCAGAAGCTGTGGTAGATTCAGATGTTCGCCGAGAAACTTCAGG
GAGCGGTATGGAACAGCCAGTTGCGATATGGGGAAACTGCCCAGCAGCAC
TTGCAGGCTTTTGGGAGTACTCGAGGGAAAGACTAGACCGGGACAATCAC
AGAGGCGAACAAGTGGGGTGAGGAAAATTGTCTGAAAGTGCTTCGTATGT
CCGGGCGTGCGACTAACGCTGACCACCTTGCGTCCCTTTAAGGCATTGAT
CAGCGACGACTTTCCGACATTGGGAAATCCAATGCAGCCAATGGTCAGGA
CCCCACTGTGATATTTAACGTGCTCGTGGGGCGTGGTGTCGATGCTGCTG
CTGATCTTGAGTTCACCCTCCACGGCCGTTGATATTTCATCCAGGATGTC
AAGCTGATCACTACGCATGTCCTCTCGTATCTTCTGCTCCCAGGTTGTTA
GATCCACCTTCTCT

BS05037.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9320-PA 1728 CG9320-RA 836..1728 909..17 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-RA 1961 CG9320-RA 972..1867 909..14 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20753601..20754365 909..145 3825 100 Minus
2L 23513712 2L 20754431..20754561 144..14 655 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:14:37 has no hits.

BS05037.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:11 Download gff for BS05037.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9320-PA 831..1728 17..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:14 Download gff for BS05037.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9320-PA 831..1728 17..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:05:23 Download gff for BS05037.3prime
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 967..1869 11..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:02 Download gff for BS05037.3prime
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 967..1869 11..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:02 Download gff for BS05037.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20754431..20754563 11..144 99   Minus
2L 20753596..20754365 145..914 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:05:23 Download gff for BS05037.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20753596..20754365 145..914 99 -> Minus
arm_2L 20754431..20754563 11..144 99   Minus

BS05037.5prime Sequence

875 bp (757 high quality bases) assembled on 2005-12-02

> BS05037.5prime
GAAGTTATCAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCG
GCAAGAAGAAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCC
CCAAAGTATCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCC
GGAAACGACCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACC
GAAACAAGAACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAA
AAGGAACTGGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACT
CAGTCCCGCTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACT
TCCCAGTTCGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGAT
CGCACCGAGAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAA
GCAGCGTGCTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGG
AAACCTGGCGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTG
ATCATTGTGGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTA
CGACTATATTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACA
AGGTGGATCTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTC
CGCGACCGTTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCC
CCGATCCCGCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCAGGAGTA
TGGAAGGAGTGTATAATATCTACAAGGAATGCCAGCGCTATGTCCAAGGA
GAGGTGGATCTAACAACCTGGGAGC

BS05037.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9320-PA 1728 CG9320-RA 1..859 17..875 4295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-RA 1961 CG9320-RA 137..995 17..875 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20753172..20753624 423..875 2265 100 Plus
2L 23513712 2L 20752779..20753110 94..425 1660 100 Plus
2L 23513712 2L 20752612..20752692 17..97 405 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:05:08 has no hits.

BS05037.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:12 Download gff for BS05037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9320-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:16 Download gff for BS05037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9320-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:29:25 Download gff for BS05037.5prime
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 137..995 17..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:41 Download gff for BS05037.5prime
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 137..995 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:41 Download gff for BS05037.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20752612..20752690 17..95 100 -> Plus
2L 20752781..20753109 96..424 100 -> Plus
2L 20753174..20753624 425..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:29:25 Download gff for BS05037.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20752612..20752690 17..95 100 -> Plus
arm_2L 20752781..20753109 96..424 100 -> Plus
arm_2L 20753174..20753624 425..875 100   Plus

BS05037.complete Sequence

1760 bp assembled on 2007-10-26

GenBank Submission: FJ635045

> BS05037.complete
GAAGTTATCAGTCGACATGCCACAGCAACGGCGCAAGGTGGCCTTTAGCG
GCAAGAAGAAGAAGGACCAGATGTTGCAAAAGCGCAACACAAAAGGTCCC
CCAAAGTATCTGAGGAGCACGCAGGAGTCGTATGAGGACAGCGATGTGCC
GGAAACGACCAGGAAACTCATGGAGCAGCCTTTTGCGCGCGGCGGAAACC
GAAACAAGAACGTCAATCGCTATAATTTGCAATTCTACCAGGAGGGCAAA
AAGGAACTGGAGCAAATGAAACAAGAGGGCTTTAAACCGTTCGAGAAACT
CAGTCCCGCTCAGCGGGAAGTGGACGACCGATACTTTGCCGGCTGCGACT
TCCCAGTTCGTCCACCTTGGACGCTAACGGAGTCCAAGGAAGAGCTTGAT
CGCACCGAGAATCGCTACTTTAAGGAATACGTGGACGAGCTGCAGAAAAA
GCAGCGTGCTGGAGATTCGAAGGAGCTTTCGCTGTTTGAGCTGAATCTGG
AAACCTGGCGTCAGCTATGGCGTGTCCTGGAGTTCTCGGACATCCTGCTG
ATCATTGTGGACGTGCGCTATGCCACGCTGATGTTTCCACCCTCCCTGTA
CGACTATATTATCAACACGCTAAAGAAACATGCGATAGTGGTGTTCAACA
AGGTGGATCTAGTCGAACCGCATGCGGTGGTGGCTTGGAGGCAATACTTC
CGCGACCGTTACCCCCAGCTACCAGTGGTGCTCTTTGCATCCTTCCTCCC
CCGATCCCGCAAAGGAAGTCAACGTGGTCCACAGGCTCATCGCAGGAGTA
TGGAAGGAGTGTATAATATCTACAAGGAATGCCAGCGCTATGTCCAAGGA
GAGGTGGATCTAACAACCTGGGAGCAGAAGATACGAGAGGACATGCGTAG
TGATCAGCTTGACATCCTGGATGAAATATCAACGGCCGTGGAGGGTGAAC
TCAAGATCAGCAGCAGCATCGACACCACGCCCCACGAGCACGTTAAATAT
CACAGTGGGGTCCTGACCATTGGCTGCATTGGATTTCCCAATGTCGGAAA
GTCGTCGCTGATCAATGCCTTAAAGGGACGCAAGGTGGTCAGCGTTAGTC
GCACGCCCGGACATACGAAGCACTTTCAGACAATTTTCCTCACCCCACTT
GTTCGCCTCTGTGATTGTCCCGGTCTAGTCTTTCCCTCGAGTACTCCCAA
AAGCCTGCAAGTGCTGCTGGGCAGTTTCCCCATATCGCAACTGGCTGTTC
CATACCGCTCCCTGAAGTTTCTCGGCGAACATCTGAATCTACCACAGCTT
CTGCGTCTCCACCTGCCCGAGGATTACGATGAGTGGTCTGCGGTGGCCAT
CTCCGATGCTTGGGCATATAAGAGGGGATTCCTCACCGCCAAGGCAGCCA
GGCCGGATCGCTACCGGGCCGCGAATCATATCCTTCGCATGTGCCTGGCC
GGCCAACAGATGTTGGTATTGCAGTTTTATCCGCCCGGATTTGAGGAGCG
ACGTGAGCACTGGCTCCAACATCCCGATGTGGGGGAGGTCAAGAAGTACC
AGCAAGTCGAATTAGATGAGCCGGAGAGCGAGACCAACGGCGACACATCA
TCCGTCTGCTCGGATACTGCCGACAGCGAGGATGAAGACGAGGACAGCTC
CAATGACGAGACCAATGCTGATGAGGAGGAATGTGGCATCAGGGAAGACG
CACCCAGGTCTCGGAACGTGTTTGCTCTGCTGGAGGACGATTAAAAGCTT
TCTAGACCAT

BS05037.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-RA 1728 CG9320-PA 1..1728 17..1744 8640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-RA 1961 CG9320-RA 137..1867 17..1747 8655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20753172..20754365 423..1616 5970 100 Plus
2L 23513712 2L 20752779..20753110 94..425 1660 100 Plus
2L 23513712 2L 20754431..20754561 1617..1747 655 100 Plus
2L 23513712 2L 20752612..20752692 17..97 405 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:08:07 has no hits.

BS05037.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:27 Download gff for BS05037.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 1..1728 17..1744 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:31 Download gff for BS05037.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 213..1945 17..1750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:56 Download gff for BS05037.complete
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 137..1862 17..1742 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:07 Download gff for BS05037.complete
Subject Subject Range Query Range Percent Splice Strand
CG9320-RA 213..1938 17..1742 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:15 Download gff for BS05037.complete
Subject Subject Range Query Range Percent Splice Strand
Ns4-RA 137..1862 17..1742 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:15 Download gff for BS05037.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20752612..20752690 17..95 100 -> Plus
2L 20752781..20753109 96..424 100 -> Plus
2L 20753174..20754365 425..1616 100 -> Plus
2L 20754431..20754556 1617..1742 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:56 Download gff for BS05037.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20752612..20752690 17..95 100 -> Plus
arm_2L 20752781..20753109 96..424 100 -> Plus
arm_2L 20753174..20754365 425..1616 100 -> Plus
arm_2L 20754431..20754556 1617..1742 100   Plus

BS05037.pep Sequence

Translation from 16 to 1743

> BS05037.pep
MPQQRRKVAFSGKKKKDQMLQKRNTKGPPKYLRSTQESYEDSDVPETTRK
LMEQPFARGGNRNKNVNRYNLQFYQEGKKELEQMKQEGFKPFEKLSPAQR
EVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQRAGD
SKELSLFELNLETWRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYIIN
TLKKHAIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLPRSRKG
SQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDI
LDEISTAVEGELKISSSIDTTPHEHVKYHSGVLTIGCIGFPNVGKSSLIN
ALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPSSTPKSLQVL
LGSFPISQLAVPYRSLKFLGEHLNLPQLLRLHLPEDYDEWSAVAISDAWA
YKRGFLTAKAARPDRYRAANHILRMCLAGQQMLVLQFYPPGFEERREHWL
QHPDVGEVKKYQQVELDEPESETNGDTSSVCSDTADSEDEDEDSSNDETN
ADEEECGIREDAPRSRNVFALLEDD*

BS05037.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ns4-PA 575 CG9320-PA 1..575 1..575 3034 100 Plus
Ns3-PB 606 CG14788-PB 115..510 113..498 392 32.4 Plus
Ns3-PA 606 CG14788-PA 115..510 113..498 392 32.4 Plus
Ns1-PA 581 CG3983-PA 121..424 140..494 177 24.2 Plus
Ns2-PA 674 CG6501-PA 316..509 333..540 174 28.1 Plus