Clone Sequence Records
BS05040.3prime Sequence
875 bp (825 high quality bases) assembled on 2005-12-02
> BS05040.3prime
ATGGTCTAGAAAGCTTCTATCGCTTGCGATATAAGCAAGGTTTGAGAGAG
AAAGCTTTCATCTTGGTGTTCTTGGGCACATGACGCATCTTCTTGAATTG
GAAGAAGTAGAAATAGTTAACAGCCACATCCTTCTTGTTAAGATCGAATC
CACATGCATTGAGGCAACGCACAAACTCCCGCACATCCTGGAATCGCGAC
TGAATCTCCGCGATATAGACAGTGCCGTGCAGCTTGAGCACTCGATTGGC
CTCCAGGAAGAACTCGTTCAGATCCGTGCCCATTAGTGAGAGGCAGTATA
CGGCCACGTCCAGAGTTCGAGCTTGGAGTGGAGTATCCGTGATGTTGCAG
GCAATGATGTCGCTACGAGCAGCGACCAAGTCCATGGAGTACACCTTGTT
GGGCACGGATTGTGCCAATTTGCCCTCGCCGCAACCAAAGTCGCCAATTA
TGGCTGTTTTGGGAATCTTCTTGATGGTCTTGATGATGCGATTAAGCGGA
TTGATGGGCCACTTCTCCACCTGCTGGCGGTAGCCAGCGTGATAGGCCTC
GAAGGCGGAGCTATCCTTGCGGAAAAGTGCCTCCGCCTTGCGACTGGTCG
TCGAGTAGAGCTGCTCGTTGATGTATCGGAAACGTCCGCCCAGGAGTTCC
GATTGCAGCTTACTGGCCAACGAGTTTGCAGCCGGCGTGGTTGAGCTGGT
GGCCTCCATGGCCTCCAAAGCCGCCTGGGCCAGTTCGGGTTTCAGTTTCA
GTTCTTTTTTGCCACCTTTTGTGGCCTGCGTTGGTGGTCGCTGTTTCTCT
ATTCTTCCGGACTTCACCTTGTGCATGGCCCGGATGCCATCCTCCACATC
TTCGTAGTCATCATCCGAGGAGTCT
BS05040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-PA | 1077 | CG7137-RA | 219..1077 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-RA | 1270 | CG7137-RA | 281..1139 | 875..17 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19227624..19228482 | 875..17 | 4295 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:22:04 has no hits.
BS05040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:15 Download gff for
BS05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-PA | 219..1077 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:20 Download gff for
BS05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-PA | 219..1077 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:02 Download gff for
BS05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 281..1145 | 11..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:35:34 Download gff for
BS05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 281..1145 | 11..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:35:34 Download gff for
BS05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19227624..19228488 | 11..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:02 Download gff for
BS05040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15115129..15115993 | 11..875 | 99 | | Minus |
BS05040.5prime Sequence
899 bp (780 high quality bases) assembled on 2005-11-29
> BS05040.5prime
GAAGTTATCAGTCGACATGAAGCCTTTCGAAGTGCCGCCCTGGGAGGAAG
GAGCCGATATCATTGAGTTTGAGCCGGTAAATCCTTCAGGAAATGGAGTT
GCCGCCAAGAAGAAACCAAAGAAGAAGAAACCCAAAAAGAAGAAGGCCGC
TGTGCCAAATGAAAATCTGAATGTGAACAAGGCAGCTGAAAAATTCACTT
ACCGGCAGGGCAGAGGACCTCTTGCCCCGCCCCAAGACTCCTCGGATGAT
GACTACGAAGATGTGGAGGATGGCATCCGGGCCATGCACAAGGTGAAGTC
CGGAAGAATAGAGAAACAGCGACCACCAACGCAGGCCACAAAAGGTGGCA
AAAAAGAACTGAAACTGAAACCCGAACTGGCCCAGGCGGCTTTGGAGGCC
ATGGAGGCCACCAGCTCAACCACGCCGGCTGCAAACTCGTTGGCCAGTAA
GCTGCAATCGGAACTCCTGGGCGGACGTTTCCGATACATCAACGAGCAGC
TCTACTCGACGACCAGTCGCAAGGCGGAGGCACTTTTCCGCAAGGATAGC
TCCGCCTTCGAGGCCTATCACGCTGGCTACCGCCAGCAGGTGGAGAAGTG
GCCCATCAATCCGCTTAATCGCATCATCAAGACCATCAAGAAGATTCCCA
AAACAGCCATAATTGGCGACTTTGGTTGCGGCGAGGGCAAATTGGCACAA
TCCGTGCCCAACAAGGTGTACTCCATGGACTTGGTCGCTGCTCGTAGCGA
CATCATTGCCTGCAACATCACGGATACTCCACTCCCAGCTCGAACTCTGG
ACGTGGCCGTATACTGCCTCTCACTAATGGGCACGGATCTGAACGAGTTC
TTCCTGGANGCCAATCGAGTGCTCAAGCTGCACGGCACTGTCTATATCG
BS05040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-PA | 1077 | CG7137-RA | 1..883 | 17..899 | 4371 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-RA | 1270 | CG7137-RA | 63..945 | 17..899 | 4389 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19227406..19228288 | 17..899 | 4389 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:41:35 has no hits.
BS05040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:16 Download gff for
BS05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:21 Download gff for
BS05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:00:05 Download gff for
BS05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 63..945 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:08 Download gff for
BS05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 63..945 | 17..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:08 Download gff for
BS05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19227406..19228288 | 17..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:00:05 Download gff for
BS05040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15114911..15115793 | 17..899 | 99 | | Plus |
BS05040.complete Sequence
1109 bp (1109 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635046
> BS05040.complete
GAAGTTATCAGTCGACATGAAGCCTTTCGAAGTGCCGCCCTGGGAGGAAG
GAGCCGATATCATTGAGTTTGAGCCGGTAAATCCTTCAGGAAATGGAGTT
GCCGCCAAGAAGAAACCAAAGAAGAAGAAACCCAAAAAGAAGAAGGCCGC
TGTGCCAAATGAAAATCTGAATGTGAACAAGGCAGCTGAAAAATTCACTT
ACCGGCAGGGCAGAGGACCTCTTGCCCCGCCCCAAGACTCCTCGGATGAT
GACTACGAAGATGTGGAGGATGGCATCCGGGCCATGCACAAGGTGAAGTC
CGGAAGAATAGAGAAACAGCGACCACCAACGCAGGCCACAAAAGGTGGCA
AAAAAGAACTGAAACTGAAACCCGAACTGGCCCAGGCGGCTTTGGAGGCC
ATGGAGGCCACCAGCTCAACCACGCCGGCTGCAAACTCGTTGGCCAGTAA
GCTGCAATCGGAACTCCTGGGCGGACGTTTCCGATACATCAACGAGCAGC
TCTACTCGACGACCAGTCGCAAGGCGGAGGCACTTTTCCGCAAGGATAGC
TCCGCCTTCGAGGCCTATCACGCTGGCTACCGCCAGCAGGTGGAGAAGTG
GCCCATCAATCCGCTTAATCGCATCATCAAGACCATCAAGAAGATTCCCA
AAACAGCCATAATTGGCGACTTTGGTTGCGGCGAGGGCAAATTGGCACAA
TCCGTGCCCAACAAGGTGTACTCCATGGACTTGGTCGCTGCTCGTAGCGA
CATCATTGCCTGCAACATCACGGATACTCCACTCCAAGCTCGAACTCTGG
ACGTGGCCGTATACTGCCTCTCACTAATGGGCACGGATCTGAACGAGTTC
TTCCTGGAGGCCAATCGAGTGCTCAAGCTGCACGGCACTGTCTATATCGC
GGAGATTCAGTCGCGATTCCAGGATGTGCGGGAGTTTGTGCGTTGCCTCA
ATGCATGTGGATTCGATCTTAACAAGAAGGATGTGGCTGTTAACTATTTC
TACTTCTTCCAATTCAAGAAGATGCGTCATGTGCCCAAGAACACCAAGAT
GAAAGCTTTCTCTCTCAAACCTTGCTTATATCGCAAGCGATAGAAGCTTT
CTAGACCAT
BS05040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-RA | 1077 | CG7137-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-RA | 1270 | CG7137-RA | 63..1139 | 17..1093 | 5385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19227406..19228482 | 17..1093 | 5385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:09:30 has no hits.
BS05040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:16 Download gff for
BS05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 1..1077 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:56 Download gff for
BS05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 77..1159 | 17..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:56 Download gff for
BS05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 63..1139 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:16 Download gff for
BS05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 77..1159 | 17..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:12 Download gff for
BS05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7137-RA | 63..1139 | 17..1093 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:12 Download gff for
BS05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19227406..19228482 | 17..1093 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:56 Download gff for
BS05040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15114911..15115987 | 17..1093 | 100 | | Plus |
BS05040.pep Sequence
Translation from 16 to 1092
> BS05040.pep
MKPFEVPPWEEGADIIEFEPVNPSGNGVAAKKKPKKKKPKKKKAAVPNEN
LNVNKAAEKFTYRQGRGPLAPPQDSSDDDYEDVEDGIRAMHKVKSGRIEK
QRPPTQATKGGKKELKLKPELAQAALEAMEATSSTTPAANSLASKLQSEL
LGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQQVEKWPINPL
NRIIKTIKKIPKTAIIGDFGCGEGKLAQSVPNKVYSMDLVAARSDIIACN
ITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKLHGTVYIAEIQSR
FQDVREFVRCLNACGFDLNKKDVAVNYFYFFQFKKMRHVPKNTKMKAFSL
KPCLYRKR*
BS05040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7137-PA | 358 | CG7137-PA | 1..358 | 1..358 | 1859 | 100 | Plus |
