Clone Sequence Records
BS05042.complete Sequence
1967 bp assembled on 2009-12-07
GenBank Submission: KX796043
> BS05042.complete
GAAGTTATCAGTCGACATGATCCGCATCCGATTTGGAATGGATGTGCTGC
TAGTTTTGCTACTTGCCACATGCCTGCTGACCCCTGCACATGGAACGCCA
CTGGAGTGGGACTTTGCCGTCACGCTGAGGACGAAGATCCAGTTCATGGA
CAGTTCCTGGCAGACGATAGCCACCGCCGCCCATGAGTTCGACGAGCTGT
CCGCCCTGACCTTTGATGAGTCGGAGGAGCTGATCTACTTCAATGACCTG
AAGCACCGCAATGGCAGCATATTCTCCCTGAAACGGGATCTCATTGCCGC
CAACCACGTGGCGGAGCAAACGATCGCACGCACGGGTAATGAGTCGGTGG
GAGGACTAGCCTACGACCCACTGAACATGAACCTCTTCTGGTCGGACACC
GAGCAGAGAAAGATCTTCTTTGCACCCATTCACGGCTCTGCGACGCCCCA
GGTTCTGGTGGATCTGAGCGCGGAGGGTGGACGACCAGATGGCGTGGCAG
TCGATGTGTGCCGCCGCAAGCTGTACTGGACGAACTCGAACGTCACGCAT
CCCACTGTGGAGAGGATCAATCTGGATGGCAGCAATAGGACCGTGATCAT
CAGCTCCAACATCGATATGCCCAGGGGAATCGTGGTGGATCAGCTGTCGG
ATCGCCTCTTCTGGATTGACGACCTGAAGGGCGTGTTCTTCTCGGTAGAG
AGCTCCAAACTGGACGGTTCCGATCGTCAGGTGGTGCTGAAGGACAAGCA
CCATGAGCCCCTCAACCTGGCCGTGACCAACGATGCCATCTACTGGACGG
ATCGTACTACCAGGGCCGTTTGGAGTCACCCGAAAGTGCCGGTGATCAAG
GTTACCACCACTAGCAAGCCAGACGAGGAGGATTCCACTGATTCCACGGA
CTTCAAGGACCCCGAGCCGGTGGCCGAGGACTGTCCGCTGGTGCGCGTTG
CCAATCTTAGCGAGGAAGCGCGAGGAATTGTGGCCCGCACCGGCTTCTAC
CAGAGACTGCAGAAGGACCACCATTGCGCCAGCATTGTGCGGAAGGTGAA
GGAGCGCGTGGACGAGCAGAGCAGGAAGTTTGAAATACGCTCACTGCTGG
ACCAGAAGATAAAGGTGCTCGAAGACGAGCGTTGCATGAACGACGGCGAG
TACAGGGCTGCCACGGATCTGTGCATCTGCCCGACTGGCTTTAAGGGATC
GCGTTGCGAGATCCGCGAGTGCCACAACTACTGCGTCCACGGCACATGCC
AGATGTCGGAGTTGGCCTACCCCAAGTGCTACTGCCAGCCGGGATTCAAG
GGCGAGCGTTGTGAGTTGAGCGTGTGCTCCGGACTGTGCCTCAATGGTGG
TCACTGTCGGGTGTCCAAGGACGAGAACGAAGCGCCCAGCTGTGAGTGTC
CAGCCAAGTTTGGAGGAGCTCGCTGCGAGCAGAACTCCACGGAGATATGC
TCCCTTTTCTGTCGTCTGTTGAAGCACGAGCCGGAGATGTATGTGCCCTT
CGGTTGTCACAGCATCTGTGAGGAACTGGCGCAAGACAATAGCACCAACA
TTGCTATTCCGCAGTACCAGCATTTGGAGGTGTGCCTTACGCCCAGAGTG
TGGACTAGCAGCGTGATCATCATTCTCGTCGTGGGCATCGTTTCTAGCTT
GCTGCTAGTGGCTGTGATCGTTCAAGGAATCCGTCGCCTGTACAAACCGA
AGCGCCCACGCATCAGGAAGACCTTTGTGGTTCGGAAGCAGGCCAGAACC
AACTCGGCAGGAGACACTCCGCTCACCAATCGCCCACTGGCCACCGAGCA
GTGCGAGATCACGATAGAGAACTGCTGCAACATGAACATCTGCGAAACTC
CCTGTTTCGATCCCAAGCTGGTGGAGCAGACGCTGTCCAAGTCCAGCTGC
AAGGAGGACAAGAAGATACTCATCCACAACATGGAGGATGACCTGTACTA
GAAGCTTTCTAGACCAT
BS05042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 1935 | CG12086-PA | 1..1935 | 17..1951 | 9675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 2801 | CG12086-RA | 266..2200 | 17..1951 | 9675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1504388..1505793 | 1515..110 | 7030 | 100 | Minus |
| 3L | 28110227 | 3L | 1503987..1504320 | 1849..1516 | 1670 | 100 | Minus |
| 3L | 28110227 | 3L | 1503827..1503928 | 1951..1850 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 1516913..1517006 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:14:47 has no hits.
BS05042.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:22 Download gff for
BS05042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 233..2167 | 17..1951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:38 Download gff for
BS05042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 266..2200 | 17..1951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:51 Download gff for
BS05042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 233..2167 | 17..1951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:14 Download gff for
BS05042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 266..2200 | 17..1951 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:14 Download gff for
BS05042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1503827..1503928 | 1850..1951 | 100 | <- | Minus |
| 3L | 1503987..1504320 | 1516..1849 | 100 | <- | Minus |
| 3L | 1504388..1505792 | 111..1515 | 100 | <- | Minus |
| 3L | 1516913..1517006 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:38 Download gff for
BS05042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1503827..1503928 | 1850..1951 | 100 | <- | Minus |
| arm_3L | 1503987..1504320 | 1516..1849 | 100 | <- | Minus |
| arm_3L | 1504388..1505792 | 111..1515 | 100 | <- | Minus |
| arm_3L | 1516913..1517006 | 17..110 | 100 | | Minus |
BS05042.3prime Sequence
907 bp (772 high quality bases) assembled on 2005-12-02
> BS05042.3prime
ATGGTCTAGAAAGCTTCTAGTACAGGTCATCCTCCATGTTGTGGATGAGT
ATCTTCTTGTCCTCCTTGCAGCTGGACTTGGACAGCGTCTGCTCCACCAG
CTTGGGATCGAAACAGGGAGTTTCGCAGATGTTCATGTTGCAGCAGTTCT
CTATCGTGATCTCGCACTGCTCGGTGGCCAGTGGGCGATTGGTGAGCGGA
GTGTCTCCTGCCGAGTTGGTTCTGGCCTGCTTCCGAACCACAAAGGTCTT
CCTGATGCGTGGGCGCTTCGGTTTGTACAGGCGACGGATTCCTTGAACGA
TCACAGCCACTAGCAGCAAGCTAGAAACGATGCCCACGACGAGAATGATG
ATCACGCTGCTAGTCCACACTCTGGGCGTAAGGCACACCTCCAAATGCTG
GTACTGCGGAATAGCAATGTTGGTGCTATTGTCTTGCGCCAGTTCCTCAC
AGATGCTGTGACAACCGAAGGGCACATACATCTCCGGCTCGTGCTTCAAC
AGACGACAGAAAAGGGAGCATATCTCCGTGGAGTTCTGCTCGCAGCGAGC
TCCTCCAAACTTGGCTGGACACTCACAGCTGGGCGCTTCGTTCTCGTCCT
TGGACACCCGACAGTGACCACCATTGAGGCACAGTCCGGAGCACACGCTC
AACTCACAACGCTCGCCCTTGAATCCCGGCTGGCAGTAGCACTTGGGGTA
GGCCAACTCCGACATCTGGCATGTGCCGTGGACGCAGTAGTTGTGGCACT
CGCGGATCTCGCAACGCGATCCCTTAAAGCCAGTCGGGCAGATGCACAGA
TCCGTGGCAGCCCTGTACTCGCCGTCGTTCATGCAACGCTCGTCTTCGAG
CACCTTTATCTTCTGGTCCAGCAGTGAGCGTATTTCAAACTTCCTGCTCT
GCTCGTC
BS05042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12086-PA | 1935 | cue-RA | 1045..1935 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 2801 | CG12086-RA | 1310..2200 | 907..17 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1504388..1504842 | 453..907 | 2275 | 100 | Plus |
| 3L | 28110227 | 3L | 1503987..1504320 | 119..452 | 1670 | 100 | Plus |
| 3L | 28110227 | 3L | 1503827..1503928 | 17..118 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:37:33 has no hits.
BS05042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:19 Download gff for
BS05042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-PA | 1045..1935 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:26 Download gff for
BS05042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12086-PA | 1045..1935 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:52:05 Download gff for
BS05042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 1310..2203 | 13..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:43:04 Download gff for
BS05042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 1310..2203 | 13..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:43:04 Download gff for
BS05042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1503824..1503928 | 13..118 | 98 | <- | Plus |
| 3L | 1503987..1504320 | 119..452 | 100 | <- | Plus |
| 3L | 1504388..1504842 | 453..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:52:05 Download gff for
BS05042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1503824..1503928 | 13..118 | 98 | <- | Plus |
| arm_3L | 1503987..1504320 | 119..452 | 100 | <- | Plus |
| arm_3L | 1504388..1504842 | 453..907 | 100 | | Plus |
BS05042.5prime Sequence
868 bp (767 high quality bases) assembled on 2005-12-02
> BS05042.5prime
GAAGTTATCAGTCGACATGATCCGCATCCGATTTGGAATGGATGTGCTGC
TAGTTTTGCTACTTGCCACATGCCTGCTGACCCCTGCACATGGAACGCCA
CTGGAGTGGGACTTTGCCGTCACGCTGAGGACGAAGATCCAGTTCATGGA
CAGTTCCTGGCAGACGATAGCCACCGCCGCCCATGAGTTCGACGAGCTGT
CCGCCCTGACCTTTGATGAGTCGGAGGAGCTGATCTACTTCAATGACCTG
AAGCACCGCAATGGCAGCATATTCTCCCTGAAACGGGATCTCATTGCCGC
CAACCACGTGGCGGAGCAAACGATCGCACGCACGGGTAATGAGTCGGTGG
GAGGACTAGCCTACGACCCACTGAACATGAACCTCTTCTGGTCGGACACC
GAGCAGAGAAAGATCTTCTTTGCACCCATTCACGGCTCTGCGACGCCCCA
GGTTCTGGTGGATCTGAGCGCGGAGGGTGGACGACCAGATGGCGTGGCAG
TCGATGTGTGCCGCCGCAAGCTGTACTGGACGAACTCGAACGTCACGCAT
CCCACTGTGGAGAGGATCAATCTGGATGGCAGCAATAGGACCGTGATCAT
CAGCTCCAACATCGATATGCCCAGGGGAATCGTGGTGGATCAGCTGTCGG
ATCGCCTCTTCTGGATTGACGACCTGAAGGGCGTGTTCTTCTCGGTAGAG
AGCTCCAAACTGGACGGTTCCGATCGTCAGGTGGTGCTGAAGGACAAGCA
CCATGAGCCCCTCAACCTGGCCGTGACCAACGATGCCATCTACTGGACGG
ATCGTACTACCAGGGCCGTTTGGAGTCACCCGAAAGTGCCGGTGATCAAG
GTTACCACCACTAGCAAG
BS05042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12086-PA | 1935 | cue-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-RA | 2801 | CG12086-RA | 266..1117 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1505035..1505793 | 868..110 | 3795 | 100 | Minus |
| 3L | 28110227 | 3L | 1516913..1517006 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:26:18 has no hits.
BS05042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:20 Download gff for
BS05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:28 Download gff for
BS05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12086-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:44:28 Download gff for
BS05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 261..1117 | 11..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:23:44 Download gff for
BS05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cue-RA | 261..1117 | 11..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:23:44 Download gff for
BS05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1516913..1517011 | 11..110 | 97 | | Minus |
| 3L | 1505035..1505792 | 111..868 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:44:28 Download gff for
BS05042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1505035..1505792 | 111..868 | 100 | <- | Minus |
| arm_3L | 1516913..1517011 | 11..110 | 97 | | Minus |
BS05042.pep Sequence
Translation from 16 to 1950
> BS05042.pep
MIRIRFGMDVLLVLLLATCLLTPAHGTPLEWDFAVTLRTKIQFMDSSWQT
IATAAHEFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAE
QTIARTGNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDL
SAEGGRPDGVAVDVCRRKLYWTNSNVTHPTVERINLDGSNRTVIISSNID
MPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVVLKDKHHEPLN
LAVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPE
PVAEDCPLVRVANLSEEARGIVARTGFYQRLQKDHHCASIVRKVKERVDE
QSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATDLCICPTGFKGSRCEIR
ECHNYCVHGTCQMSELAYPKCYCQPGFKGERCELSVCSGLCLNGGHCRVS
KDENEAPSCECPAKFGGARCEQNSTEICSLFCRLLKHEPEMYVPFGCHSI
CEELAQDNSTNIAIPQYQHLEVCLTPRVWTSSVIIILVVGIVSSLLLVAV
IVQGIRRLYKPKRPRIRKTFVVRKQARTNSAGDTPLTNRPLATEQCEITI
ENCCNMNICETPCFDPKLVEQTLSKSSCKEDKKILIHNMEDDLY*
BS05042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cue-PA | 644 | CG12086-PA | 1..644 | 1..644 | 3429 | 100 | Plus |
| arr-PA | 1678 | CG5912-PA | 438..630 | 63..268 | 254 | 30.6 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 645..840 | 77..274 | 237 | 29.1 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 645..840 | 77..274 | 237 | 29.1 | Plus |
| CG8909-PB | 2009 | CG8909-PB | 645..840 | 77..274 | 237 | 29.1 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 1569..1765 | 64..274 | 217 | 28.9 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 1569..1765 | 64..274 | 217 | 28.9 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 1261..1451 | 63..268 | 212 | 30 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 1261..1451 | 63..268 | 212 | 30 | Plus |
| CG8909-PC | 2008 | CG8909-PC | 957..1170 | 63..298 | 198 | 25.9 | Plus |
| CG8909-PD | 2008 | CG8909-PD | 957..1170 | 63..298 | 198 | 25.9 | Plus |
| arr-PA | 1678 | CG5912-PA | 161..317 | 100..262 | 196 | 29.5 | Plus |
| arr-PA | 1678 | CG5912-PA | 720..932 | 38..265 | 193 | 26.8 | Plus |
