Clone Sequence Records
BS05045.3prime Sequence
842 bp (841 high quality bases) assembled on 2005-12-02
> BS05045.3prime
ATGGTCTAGAAAGCTTCTAAAATTTATCCTGAAATATGAAGAGGTTATTG
GTCGCAGCCACGGCGATGATATTTTCTTCGGGGTGCCAGGCGGTGTGCAG
GATCTTCTTGTTGAAATCTAGACAGTCCACGCTGATCTCATCCTTCTTTC
GTTTGCCGCCAGTGCAAACTTTCCGTGGCTTAAGCACCGTTTTCGGTTTG
ATGATGTCCCTGGACGCCTCTAGCGTCACATCCTTTTTCGAGTTGCGATC
GAAGACGCGGAAGAAGTTGTTGTAGCTTCCGGTCATTATTGAGCTGTCCT
TGCCGTTCCAACAGCACTCGAACTTGTCGAAGATGCAGTCATTCTCGTAC
AGCGAGCACAGCTTGGCGCGCAGGTATTCATGAACCGGATAGGTCTCAAT
GGGCTTTGTTTCCATATGCAGATCCCACACTTTGATGCTCAAGTAATCCC
TGGAGATCATGTAGCGACCCGAGTTGCTTAGCTTCACATCGCTGATGGAG
CTGATTATTTCGCTGAAAAAGCTGCGATTCGTTGGATTCTCGGGCTCCTC
GAACTGTTTGCTGTGCCGGTCGCATAGCGCCGCCGAACGCATATCACATA
ATCGTATTGTGCCCTTAGAGCTCGAGTAGACAAACACATTGCACTCGGTC
GGATGGAATTCGGCCGCGGTGATCACCTCTGTTAGCTCCTCCATGTTGGT
TGGCTTGATGTCGACAATGTTGTAGCTCTGGTTGACCACCTCCAAGTGCC
ACAGATTGATCCGCAGGTCGTCGGCCGACAAGAAGGTCTCCTGATCCGAA
TTAACGCTTATTGAATTGATGTGATAGGTGTGTGCATTGGCG
BS05045.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6235-PA | 1500 | tws-RA | 675..1500 | 842..17 | 4130 | 100 | Minus |
| CG6235-PF | 1500 | tws-RF | 675..1500 | 842..17 | 4130 | 100 | Minus |
| CG6235-PB | 1332 | tws-RB | 507..1332 | 842..17 | 4130 | 100 | Minus |
| CG6235-PD | 1332 | tws-RD | 507..1332 | 842..17 | 4130 | 100 | Minus |
| CG6235-PE | 1332 | tws-RE | 507..1332 | 842..17 | 4130 | 100 | Minus |
| CG6235-PC | 1332 | tws-RC | 507..1332 | 842..17 | 4130 | 100 | Minus |
| CG6235-PG | 1332 | tws-RG | 507..1332 | 842..17 | 4130 | 100 | Minus |
| CG6235-PH | 1332 | tws-RH | 507..1332 | 842..17 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RI | 3856 | CG6235-RI | 1013..1838 | 842..17 | 4130 | 100 | Minus |
| tws-RH | 2300 | CG6235-RH | 972..1797 | 842..17 | 4130 | 100 | Minus |
| tws-RG | 2400 | CG6235-RG | 1079..1904 | 842..17 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10128627..10129086 | 383..842 | 2300 | 100 | Plus |
| 3R | 32079331 | 3R | 10128147..10128516 | 17..386 | 1850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:06:13 has no hits.
BS05045.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:26 Download gff for
BS05045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-PE | 507..1332 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:34 Download gff for
BS05045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6235-PH | 507..1332 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:32:37 Download gff for
BS05045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RC | 914..1739 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:36 Download gff for
BS05045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RG | 1079..1904 | 17..842 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:36 Download gff for
BS05045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10128147..10128515 | 17..385 | 100 | <- | Plus |
| 3R | 10128630..10129086 | 386..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:32:37 Download gff for
BS05045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5953869..5954237 | 17..385 | 100 | <- | Plus |
| arm_3R | 5954352..5954808 | 386..842 | 100 | | Plus |
BS05045.5prime Sequence
889 bp (869 high quality bases) assembled on 2005-11-29
> BS05045.5prime
GAAGTTATCAGTCGACATGGGTCGCTGGGGACGGCAGAGTCCGGTGCTGG
AGCCGCCGGACCCACAGATGCAGACGACGCCCCCGCCGCCCACTCTGCCG
CCAAGGACGTTTATGCGACAGTCGAGCATCACGAAAATCGGCAACATGCT
CAACACGGCCATCAACATCAATGGAGCCAAGAAGCCAGCAAGTAATGGAG
AGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACGATGATGTC
ACGGATGCAGACATCATATCCTGCGTGGAATTCAATCACGATGGCGAGCT
GCTGGCCACTGGTGACAAGGGCGGTCGCGTCGTCATCTTTCAGCGTGATC
CTGCCTCAAAAGCCGCCAATCCGAGACGCGGCGAATACAATGTCTATTCG
ACATTCCAATCGCACGAGCCCGAATTCGACTACCTCAAGTCCCTGGAGAT
TGAGGAGAAGATAAACAAGATCCGGTGGCTGCAACAAAAGAATCCCGTGC
ACTTTCTGCTCTCGACCAACGACAAGACAGTCAAATTGTGGAAGGTCAGT
GAGCGTGACAAGTCGTTCGGCGGCTACAACACGAAGGAGGAGAACGGACT
GATCCGGGATCCACAGAATGTAACGGCCCTCCGAGTGCCATCCGTGAAGC
AGATACCACTGCTGGTGGAGGCCTCCCCACGGCGCACCTTCGCCAATGCA
CACACCTATCACATCAATTCAATAAGCGTTAATTCGGATCAGGAGACCTT
CTTGTCGGCCGACGACCTGCGGATCAATCTGTGGCACTTGGAGGTGGTCA
ACCAGAGCTACAACATTGTCGACATCAAGCCAACCAACATGGAGGAGCTA
ACAGAGGTGATCACCGCGGCCGAATTTCATCCGACCGAG
BS05045.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6235-PA | 1500 | tws-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
| CG6235-PF | 1500 | tws-RF | 1..873 | 17..889 | 4340 | 99.8 | Plus |
| CG6235-PB | 1332 | tws-RB | 8..705 | 192..889 | 3465 | 99.8 | Plus |
| CG6235-PD | 1332 | tws-RD | 8..705 | 192..889 | 3465 | 99.8 | Plus |
| CG6235-PE | 1332 | tws-RE | 8..705 | 192..889 | 3465 | 99.8 | Plus |
| CG6235-PC | 1332 | tws-RC | 8..705 | 192..889 | 3465 | 99.8 | Plus |
| CG6235-PG | 1332 | tws-RG | 8..705 | 192..889 | 3465 | 99.8 | Plus |
| CG6235-PH | 1332 | tws-RH | 8..705 | 192..889 | 3465 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RI | 3856 | CG6235-RI | 339..1211 | 17..889 | 4350 | 99.9 | Plus |
| tws-RF | 3664 | CG6235-RF | 147..1019 | 17..889 | 4350 | 99.9 | Plus |
| tws-RA | 2520 | CG6235-RA | 518..1390 | 17..889 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10128888..10129436 | 889..341 | 2730 | 99.8 | Minus |
| 3R | 32079331 | 3R | 10134815..10134993 | 195..17 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 10129495..10129646 | 343..192 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:16:25 has no hits.
BS05045.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:27 Download gff for
BS05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:35 Download gff for
BS05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6235-PF | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:26 Download gff for
BS05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RA | 509..1390 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:28:23 Download gff for
BS05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RA | 509..1390 | 9..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:28:23 Download gff for
BS05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10128888..10129433 | 344..889 | 99 | <- | Minus |
| 3R | 10129495..10129646 | 192..343 | 100 | <- | Minus |
| 3R | 10134819..10135002 | 9..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:26 Download gff for
BS05045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5954610..5955155 | 344..889 | 99 | <- | Minus |
| arm_3R | 5955217..5955368 | 192..343 | 100 | <- | Minus |
| arm_3R | 5960541..5960724 | 9..191 | 97 | | Minus |
BS05045.complete Sequence
1532 bp (1532 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635048
> BS05045.complete
GAAGTTATCAGTCGACATGGGTCGCTGGGGACGGCAGAGTCCGGTGCTGG
AGCCGCCGGACCCACAGATGCAGACGACGCCCCCGCCGCCCACTCTGCCG
CCAAGGACGTTTATGCGACAGTCGAGCATCACGAAAATCGGCAACATGCT
CAACACGGCCATCAACATCAATGGAGCCAAGAAGCCAGCAAGTAATGGAG
AGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACGATGATGTC
ACGGATGCAGACATCATATCCTGCGTGGAATTCAATCACGATGGCGAGCT
GCTGGCCACTGGTGACAAGGGCGGTCGCGTCGTCATCTTTCAGCGTGATC
CTGCCTCAAAAGCCGCCAATCCGAGACGCGGCGAATACAATGTCTATTCG
ACATTCCAATCGCACGAGCCCGAATTCGACTACCTCAAGTCCCTGGAGAT
TGAGGAGAAGATAAACAAGATCCGGTGGCTGCAACAAAAGAATCCCGTGC
ACTTTCTGCTCTCGACCAACGACAAGACAGTCAAATTGTGGAAGGTCAGT
GAGCGTGACAAGTCGTTCGGCGGCTACAACACGAAGGAGGAGAACGGACT
GATCCGGGATCCACAGAATGTAACGGCCCTCCGAGTGCCATCCGTGAAGC
AGATACCACTGCTGGTGGAGGCCTCCCCACGGCGCACCTTCGCCAATGCA
CACACCTATCACATCAATTCAATAAGCGTTAATTCGGATCAGGAGACCTT
CTTGTCGGCCGACGACCTGCGGATCAATCTGTGGCACTTGGAGGTGGTCA
ACCAGAGCTACAACATTGTCGACATCAAGCCAACCAACATGGAGGAGCTA
ACAGAGGTGATCACCGCGGCCGAATTCCATCCGACCGAGTGCAATGTGTT
TGTCTACTCGAGCTCTAAGGGCACAATACGATTATGTGATATGCGTTCGG
CGGCGCTATGCGACCGGCACAGCAAACAGTTCGAGGAGCCCGAGAATCCA
ACGAATCGCAGCTTTTTCAGCGAAATAATCAGCTCCATCAGCGATGTGAA
GCTAAGCAACTCGGGTCGCTACATGATCTCCAGGGATTACTTGAGCATCA
AAGTGTGGGATCTGCATATGGAAACAAAGCCCATTGAGACCTATCCGGTT
CATGAATACCTGCGCGCCAAGCTGTGCTCGCTGTACGAGAATGACTGCAT
CTTCGACAAGTTCGAGTGCTGTTGGAACGGCAAGGACAGCTCAATAATGA
CCGGAAGCTACAACAACTTCTTCCGCGTCTTCGATCGCAACTCGAAAAAG
GATGTGACGCTAGAGGCGTCCAGGGACATCATCAAACCGAAAACGGTGCT
TAAGCCACGGAAAGTTTGCACTGGCGGCAAACGAAAGAAGGATGAGATCA
GCGTGGACTGTCTAGATTTCAACAAGAAGATCCTGCACACCGCCTGGCAC
CCCGAAGAAAATATCATCGCCGTGGCTGCGACCAATAACCTCTTCATATT
TCAGGATAAATTTTAGAAGCTTTCTAGACCAT
BS05045.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RI | 1500 | CG6235-PI | 1..1500 | 17..1516 | 7500 | 100 | Plus |
| tws-RF | 1500 | CG6235-PF | 1..1500 | 17..1516 | 7500 | 100 | Plus |
| tws-RA | 1500 | CG6235-PA | 1..1500 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RI | 3856 | CG6235-RI | 339..1838 | 17..1516 | 7500 | 100 | Plus |
| tws-RF | 3664 | CG6235-RF | 147..1646 | 17..1516 | 7500 | 100 | Plus |
| tws-RA | 2520 | CG6235-RA | 518..2017 | 17..1516 | 7500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10128627..10129436 | 1150..341 | 4050 | 100 | Minus |
| 3R | 32079331 | 3R | 10128147..10128516 | 1516..1147 | 1850 | 100 | Minus |
| 3R | 32079331 | 3R | 10134815..10134993 | 195..17 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 10129495..10129646 | 343..192 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:48:44 has no hits.
BS05045.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:07 Download gff for
BS05045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RF | 1..1500 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:30 Download gff for
BS05045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RF | 138..1646 | 9..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:58 Download gff for
BS05045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RA | 518..2017 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:07 Download gff for
BS05045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RF | 138..1646 | 9..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:25 Download gff for
BS05045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RA | 518..2017 | 17..1516 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:25 Download gff for
BS05045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10128147..10128515 | 1148..1516 | 100 | <- | Minus |
| 3R | 10128630..10129433 | 344..1147 | 100 | <- | Minus |
| 3R | 10129495..10129646 | 192..343 | 100 | <- | Minus |
| 3R | 10134819..10134993 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:58 Download gff for
BS05045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5953869..5954237 | 1148..1516 | 100 | <- | Minus |
| arm_3R | 5954352..5955155 | 344..1147 | 100 | <- | Minus |
| arm_3R | 5955217..5955368 | 192..343 | 100 | <- | Minus |
| arm_3R | 5960541..5960715 | 17..191 | 100 | | Minus |
BS05045.pep Sequence
Translation from 16 to 1515
> BS05045.pep
MGRWGRQSPVLEPPDPQMQTTPPPPTLPPRTFMRQSSITKIGNMLNTAIN
INGAKKPASNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGD
KGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN
KIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQ
NVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADD
LRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSS
KGTIRLCDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSG
RYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFE
CCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKV
CTGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*
BS05045.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-PI | 499 | CG6235-PI | 1..499 | 1..499 | 2650 | 100 | Plus |
| tws-PF | 499 | CG6235-PF | 1..499 | 1..499 | 2650 | 100 | Plus |
| tws-PA | 499 | CG6235-PA | 1..499 | 1..499 | 2650 | 100 | Plus |
| tws-PH | 443 | CG6235-PH | 2..443 | 58..499 | 2336 | 99.8 | Plus |
| tws-PG | 443 | CG6235-PG | 2..443 | 58..499 | 2336 | 99.8 | Plus |
