Clone Sequence Records
BS05048.3prime Sequence
917 bp (800 high quality bases) assembled on 2005-12-02
> BS05048.3prime
ATGGTCTAGAAAGCTTCTAATATAAACTCCCATTTGAACTGCCGCTCGCA
CTGTCTGTACTGCCGACAATGCTGCCATTTCCGCTCATATTACCATTGCC
AATTCCTATGCCAATACCGCTTCCGTTTCCGCTCTGTTGGGCAAAGTCCA
GCTGGAGCAGCCAGTTCCTCTTAGCCAGACCTTCGGGCGTCTCGCCACGC
TGCGTACACAGCGGCTGGAAGCAGGTGGTCAGTCCAACGCTGGGCGTGAA
CTCCGCCCGTTCGCGTAACTCCTCCTCGGTGGCCAGCATGATGCAATCGT
CGTCAATTTCATCGCTATCGACACTGTAGGCCAGCTGCTGCTGCTCTGCC
CTTTGCTGCACGATGCTGTCGCTGGTGCGCCGAAATGAGTCGTCCGTCTT
GCGCAGGAAATTGTACAGCGCCACACAGCCGAGCACCACTTCGCGGATGT
GCTTGTCACTGATGCGCAGCGGCTGCGCCAGAATGGGGAACATGTTACAC
AGTATCCGCATCGTTTGATCCGCATGGGCATTGACCTGCTCCAGGGCCTC
CAGTACGGCCAGATCCTTGGGCAGGTTGCGTGTGGTCACCAGATACGAGG
TGGCAGGCAGTACCGAATCGCCAGCAAAGTAATAGCCCTGTCGGTCCATC
TCCGCCGACTGTTGTTCCTCCAGAGCGTGCATCTTGTGCCTAATCAGCTC
GATGGCACTGGTCTGGTTATAGATGTCATTGGGTCGGCTGCTCGCCGCCC
TTTCCACCCTTGCGTACTGGAAATTGTTGTCGGCATCCACAATGCCCGTG
AAGATGACGGTCGCGCGCTTGCGATCGTCGCCAACGGCGGATGCGCTGCT
CGCCGCTCCGGAACTCGAAGCGGTCCCAGAGCCTTGGAGTTGGATGCTGC
GCATGAACAGATTGCCC
BS05048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7492-PA | 1722 | CG7492-RA | 822..1722 | 917..17 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7492-RA | 2674 | CG7492-RA | 1330..2230 | 917..17 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7652310..7653210 | 17..917 | 4505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:15:15 has no hits.
BS05048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:30 Download gff for
BS05048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-PA | 822..1722 | 17..917 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:40 Download gff for
BS05048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-PA | 822..1722 | 17..917 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:50:56 Download gff for
BS05048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-RA | 1330..2233 | 13..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:58:05 Download gff for
BS05048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-RA | 1330..2233 | 13..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:58:05 Download gff for
BS05048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7652307..7653210 | 13..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:50:56 Download gff for
BS05048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7645407..7646310 | 13..917 | 99 | | Plus |
BS05048.5prime Sequence
742 bp (741 high quality bases) assembled on 2005-12-02
> BS05048.5prime
GAAGTTATCAGTCGACATGGACAAAATCAAGTTAAAGGTTATTGGCGTGC
TGCGCGAACGCGATGGTGGAAATCGTAGTGGTTCTGGAGGATTGGGGGCA
AGTGCTGGAGCAGGAGCTGGATCTGGCGGAGTTACGGCAACAGCAGGCCA
TCAGTTGGCCTCCGCAGGAGGAGCGGGCGTGGCGCAGCCCTCGATTGGGG
TCACACAGGATAATAACAACGAAGGCAACGCCCCGGGAGGTGGAGGAGCA
GTAATCGAACCCCAGGCAACGGGAGGAGCCGCCGGACCATCTGGTGGAGT
TGGTGGCGCCGCTAGAACATCGGTGCTATCCAGACCGCAGACCTCCAAGA
TTAGCGCTCTAGACCTGGCCGGTATACTCAACACGCGGAGAAGACTCGAG
TGGACCAAGGAGTGGCTGCGCAAAAACCAGACCGAGTTTCTCAGCAAGGA
GAATTTACTTAGTGAACTGCAGTCGCGCAAGGATGAGTGCTATCACTTGA
ATTACTTTCTAGCCATAACAGAGAGCCAGTTTCGGTATCTAGTGCAAAAG
CTGGAGCCCATCATTAGCCAGTATGCTCCGCAACGCAAGAAGAAGTCCTT
CAGCGCCGAGGAACGACTGGCCATAACGCTCAAGTATTTGGCAACGGGTG
AAGTACATTCTTGTCGAAACTACTGCTTCCGTGCCTCGAAATTTGTGATA
AACGAAATGATTGCCAATATCTGTCTGGGCTTCTACGAGCAC
BS05048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7492-PA | 1722 | CG7492-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7492-RA | 2674 | CG7492-RA | 508..1234 | 16..742 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7653459..7654092 | 649..16 | 3170 | 100 | Minus |
| 3L | 28110227 | 3L | 7653306..7653401 | 742..647 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:55:02 has no hits.
BS05048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:31 Download gff for
BS05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:42 Download gff for
BS05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:43:05 Download gff for
BS05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-RA | 508..1234 | 16..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:43 Download gff for
BS05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-RA | 508..1234 | 16..742 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:43 Download gff for
BS05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7653306..7653400 | 648..742 | 100 | <- | Minus |
| 3L | 7653461..7654092 | 16..647 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:43:05 Download gff for
BS05048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7646406..7646500 | 648..742 | 100 | <- | Minus |
| arm_3L | 7646561..7647192 | 16..647 | 100 | | Minus |
BS05048.complete Sequence
1754 bp assembled on 2008-08-14
GenBank Submission: FJ635049
> BS05048.complete
GAAGTTATCAGTCGACATGGACAAAATCAAGTTAAAGGTTATTGGCGTGC
TGCGCGAACGCGATGGTGGAAATCGTAGTGGTTCTGGAGGATTGGGGGCA
AGTGCTGGAGCAGGAGCTGGATCTGGCGGAGTTACGGCAACAGCAGGCCA
TCAGTTGGCCTCCGCAGGAGGAGCGGGCGTGGCGCAGCCCTCGATTGGGG
TCACACAGGATAATAACAACGAAGGCAACGCCCCGGGAGGTGGAGGAGCA
GTAATCGAACCCCAGGCAACGGGAGGAGCCGCCGGACCATCTGGTGGAGT
TGGTGGCGCCGCTAGAACATCGGTGCTATCCAGACCGCAGACCTCCAAGA
TTAGCGCTCTAGACCTGGCCGGTATACTCAACACGCGGAGAAGACTCGAG
TGGACCAAGGAGTGGCTGCGCAAAAACCAGACCGAGTTTCTCAGCAAGGA
GAATTTACTTAGTGAACTGCAGTCGCGCAAGGATGAGTGCTATCACTTGA
ATTACTTTCTAGCCATAACAGAGAGCCAGTTTCGGTATCTAGTGCAAAAG
CTGGAGCCCATCATTAGCCAGTATGCTCCGCAACGCAAGAAGAAGTCCTT
CAGCGCCGAGGAACGACTGGCCATAACGCTCAAGTATTTGGCAACGGGTG
AAGTACATTCTTGTCGAAACTACTGCTTCCGTGCCTCGAAATTTGTGATA
AACGAAATGATTGCCAATATCTGTCTGGGCTTCTACGAGCACCTCAAGGA
CCAATACGTGACACTACCAAAGACTGACGATCAGTGGCGCAGCGCCGCCG
AGGAGATGGAGCGTAAGCACAACCTGCCCCACTGTGTGGGCAATCTGTTC
ATGCGCAGCATCCAACTCCAAGGCTCTGGGACCGCTTCGAGTTCCGGAGC
GGCGAGCAGCGCATCCGCCGTTGGCGACGATCGCAAGCGCGCGACCGTCA
TCTTCACGGGCATTGTGGATGCCGACAACAATTTCCAGTACGCAAGGGTG
GAAAGGGCGGCGAGCAGCCGACCCAATGACATCTATAACCAGACCAGTGC
CATCGAGCTGATTAGGCACAAGATGCACGCTCTGGAGGAACAACAGTCGG
CGGAGATGGACCGACAGGGCTATTACTTTGCTGGCGATTCGGTACTGCCT
GCCACCTCGTATCTGGTGACCACACGCAACCTGCCCAAGGATCTGGCCGT
ACTGGAGGCCCTGGAGCAGGTCAATGCCCATGCGGATCAAACGATGCGGA
TACTGTGTAACATGTTCCCCATTCTGGCGCAGCCGCTGCGCATCAGTGAC
AAGCACATCCGCGAAGTGGTGCTCGGCTGTGTGGCGCTGTACAATTTCCT
GCGCAAGACGGACGACTCATTTCGGCGCACCAGCGACAGCATCGTGCAGC
AAAGGGCAGAGCAGCAGCAGCTGGCCTACAGTGTCGATAGCGATGAAATT
GACGACGATTGCATCATGCTGGCCACCGAGGAGGAGTTACGCGAACGGGC
GGAGTTCACGCCCAGCGTTGGACTGACCACCTGCTTCCAGCCGCTGTGTA
CGCAGCGTGGCGAGACGCCCGAAGGTCTGGCTAAGAGGAACTGGCTGCTC
CAGCTGGACTTTGCCCAACAGAGCGGAAACGGAAGCGGTATTGGCATAGG
AATTGGCAATGGTAATATGAGCGGAAATGGCAGCATTGTCGGCAGTACAG
ACAGTGCGAGCGGCAGTTCAAATGGGAGTTTATATTAGAAGCTTTCTAGA
CCAT
BS05048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7492-RA | 1722 | CG7492-PA | 1..1722 | 17..1738 | 8610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7492-RA | 2674 | CG7492-RA | 508..2230 | 16..1738 | 8615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7652310..7653401 | 1738..647 | 5460 | 100 | Minus |
| 3L | 28110227 | 3L | 7653459..7654092 | 649..16 | 3170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:01:22 has no hits.
BS05048.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:46 Download gff for
BS05048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-RA | 501..2226 | 16..1742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:30 Download gff for
BS05048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-RA | 509..2230 | 17..1738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:50 Download gff for
BS05048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-RA | 502..2223 | 17..1738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:34 Download gff for
BS05048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7492-RA | 509..2230 | 17..1738 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:34 Download gff for
BS05048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7652310..7653400 | 648..1738 | 100 | <- | Minus |
| 3L | 7653461..7654091 | 17..647 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:30 Download gff for
BS05048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7645410..7646500 | 648..1738 | 100 | <- | Minus |
| arm_3L | 7646561..7647191 | 17..647 | 100 | | Minus |
BS05048.pep Sequence
Translation from 16 to 1737
> BS05048.pep
MDKIKLKVIGVLRERDGGNRSGSGGLGASAGAGAGSGGVTATAGHQLASA
GGAGVAQPSIGVTQDNNNEGNAPGGGGAVIEPQATGGAAGPSGGVGGAAR
TSVLSRPQTSKISALDLAGILNTRRRLEWTKEWLRKNQTEFLSKENLLSE
LQSRKDECYHLNYFLAITESQFRYLVQKLEPIISQYAPQRKKKSFSAEER
LAITLKYLATGEVHSCRNYCFRASKFVINEMIANICLGFYEHLKDQYVTL
PKTDDQWRSAAEEMERKHNLPHCVGNLFMRSIQLQGSGTASSSGAASSAS
AVGDDRKRATVIFTGIVDADNNFQYARVERAASSRPNDIYNQTSAIELIR
HKMHALEEQQSAEMDRQGYYFAGDSVLPATSYLVTTRNLPKDLAVLEALE
QVNAHADQTMRILCNMFPILAQPLRISDKHIREVVLGCVALYNFLRKTDD
SFRRTSDSIVQQRAEQQQLAYSVDSDEIDDDCIMLATEEELRERAEFTPS
VGLTTCFQPLCTQRGETPEGLAKRNWLLQLDFAQQSGNGSGIGIGIGNGN
MSGNGSIVGSTDSASGSSNGSLY*
BS05048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7492-PA | 573 | CG7492-PA | 1..573 | 1..573 | 2937 | 100 | Plus |
