Clone Sequence Records
BS05049.3prime Sequence
837 bp (745 high quality bases) assembled on 2005-12-02
> BS05049.3prime
ATGGTCTAGAAAGCTTTTATATTTTCAACTCGCTGAGGAACTCTGCCACC
TCAAGGGCGTCTTCACTAGCCAGCTTTGTCTCCTTGACGGCACTGTTTAA
TCCTCGACCAGCGGTTCCCATGTTTTTCTTCCACTGCTCGACAGTTTTGT
ACTTTTCATCGTTGGCACAATATATTATCTCGTTGATGTCTTCCTCTAGT
TTGTAGCTGCACACAGCAGGAAAGACTTTGTGCAGATTGTTGAGAGCCTC
TGTGCGAAGGCTCTCATCGCGACACACGAGATTTAGCATAAAGAGACCTT
TCGGACCGATAATCTCCTTTATGTGCTGCAGGATCTTCGTAGCTAGGAAG
CTTTGGGGCGGACAACTCATTCCCAAACTGAGATCCTTGCTGTCTACATC
GAACAACACGGCATCGAAGTGGATATCTTCATTGCGACATCGCTCAACGA
AATCCAAGCCATCATCGATAACCACATGAAAGCGTTTGTCCTGCTTGAGC
TCAAAATACTGCTCAGCCACCTCCAACATTATAGGATCAATTTCGACGGC
CGTTATTCTAGCTTGCGGCAAAGCGGCGTGAAGAAAGCTGCACAGACCGC
CGCCTCCCAAGCCGACGACGAGAACATCCTTTTCCACATCTCTTTTGGGA
TGCTGCACCGTTGTGGCCAGTTGGACACCCACGGACATGTACAAATGATG
CTGGCAGGCTAGGTAGCCGAAGTCAATCTTCTTTCGATCCTTTTTGCCTT
TGATTTTGACTGTTTTAACTAAGGCTTCCGATTGCACAACAAACTGATTG
CTGAGAAAATAAGGCGTCGCAAGGTCTTGCCTTTGGC
BS05049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2614-PA | 2022 | CG2614-RA | 1230..2022 | 809..17 | 3965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2614-RA | 2246 | CG2614-RA | 1285..2106 | 837..17 | 4055 | 99.6 | Minus |
CG2614-RC | 2234 | CG2614-RC | 1285..2094 | 837..17 | 3865 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20658667..20659078 | 428..17 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 20658210..20658405 | 761..566 | 980 | 100 | Minus |
2L | 23513712 | 2L | 20658462..20658601 | 566..427 | 700 | 100 | Minus |
2L | 23513712 | 2L | 20658077..20658155 | 837..760 | 315 | 96.2 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:16:13 has no hits.
BS05049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:32 Download gff for
BS05049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-PA | 1201..2022 | 17..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:43 Download gff for
BS05049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-PA | 1201..2022 | 17..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:51:05 Download gff for
BS05049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-RA | 1285..2111 | 10..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:58:14 Download gff for
BS05049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-RA | 1285..2111 | 10..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:58:14 Download gff for
BS05049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20658077..20658155 | 760..837 | 96 | -> | Minus |
2L | 20658212..20658404 | 567..759 | 100 | -> | Minus |
2L | 20658462..20658601 | 427..566 | 100 | -> | Minus |
2L | 20658669..20659080 | 14..426 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:51:05 Download gff for
BS05049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20658077..20658155 | 760..837 | 96 | -> | Minus |
arm_2L | 20658212..20658404 | 567..759 | 100 | -> | Minus |
arm_2L | 20658462..20658601 | 427..566 | 100 | -> | Minus |
arm_2L | 20658669..20659080 | 14..426 | 99 | -> | Minus |
BS05049.5prime Sequence
836 bp (754 high quality bases) assembled on 2005-12-02
> BS05049.5prime
GAAGTTATCAGTCGACATGAATTTACTGCCCAAAACCCGCGAGGAGTTCG
CACAGACCGATTACTGGAACGAATTCTTCAAGAAGCGCGGTGAGAAGGCC
TTCGAATGGTACGGCGAATACCTGGAGTTGTGCGACCAGATCCACAAATA
CATCAAGCCGGCGGATAGGATTTTGATGCTGGGATGCGGTAACTCCAAAT
TGAGCATGGATATGTACGACACAGGATTTCGGGATATCACAAACATAGAT
ATATCTCCCATCGCTGTGAAGAAAATGCTGGAACTGAATGCCAAATCGCG
GCCGGAAATGAAGTTTCTGCAAATGGACGCGACAGCAATGACGTTCCCGG
ATGAAAGCTTTTCGGTGTCGTTGGACAAGGGAACGCTGGATGCTCTGTTT
GCCGACGACGAACCTGAAACGAGAGCGGTGGTGGAAAACTATTTCAAGGA
AATACTAAGAACCATGAGGAACGGTGGTCGCTATGTGGGTATCTCCCTGC
TGCAAGAGCACATCCTCAATTTCCTACTGGACTTCCTGCCCAAGCACAAT
TGCATGCTGAGGATTGTTCACTGCTTGGGGGTGGAACAGGCCAACAAAGA
GAAGAATGCCGATGATGCCTTGACGCTGCCTGTTTTCGTAGTCGTCGCTA
CTAAATTTAAGAGCCTTCCAATGCCAGTACTCGAATTTGGTTTCGGCAAC
GACAAGATGCAAAGATTCACCACGGTCTCCGAACTGAATAGCGCAGTTTC
ATCAGTCCAAAAGGCCGCTTTGGTTTGCAACGGTCTAGCCAGATCCCACA
TAGCTGGTCACAATGAGGTGATCATGGATCTGCACC
BS05049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2614-PA | 2022 | CG2614-RA | 1..820 | 17..836 | 4075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2614-RC | 2234 | CG2614-RC | 84..904 | 16..836 | 4090 | 99.9 | Plus |
CG2614-RA | 2246 | CG2614-RA | 84..904 | 16..836 | 4090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20656972..20657210 | 231..469 | 1195 | 100 | Plus |
2L | 23513712 | 2L | 20657262..20657477 | 463..678 | 1065 | 99.5 | Plus |
2L | 23513712 | 2L | 20657537..20657696 | 677..836 | 785 | 99.4 | Plus |
2L | 23513712 | 2L | 20656707..20656831 | 108..232 | 625 | 100 | Plus |
2L | 23513712 | 2L | 20656509..20656606 | 16..113 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:10:27 has no hits.
BS05049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:33 Download gff for
BS05049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:44 Download gff for
BS05049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:46:23 Download gff for
BS05049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-RA | 84..904 | 16..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:53:16 Download gff for
BS05049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-RA | 84..904 | 16..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:53:16 Download gff for
BS05049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20656509..20656601 | 16..108 | 100 | -> | Plus |
2L | 20656708..20656830 | 109..231 | 100 | -> | Plus |
2L | 20656973..20657209 | 232..468 | 100 | -> | Plus |
2L | 20657268..20657475 | 469..676 | 100 | -> | Plus |
2L | 20657537..20657696 | 677..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:46:23 Download gff for
BS05049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20657268..20657475 | 469..676 | 100 | -> | Plus |
arm_2L | 20656509..20656601 | 16..108 | 100 | -> | Plus |
arm_2L | 20656708..20656830 | 109..231 | 100 | -> | Plus |
arm_2L | 20656973..20657209 | 232..468 | 100 | -> | Plus |
arm_2L | 20657537..20657696 | 677..836 | 99 | | Plus |
BS05049.complete Sequence
2054 bp assembled on 2010-05-10
GenBank Submission: KX795716
> BS05049.complete
GAAGTTATCAGTCGACATGAATTTACTGCCCAAAACCCGCGAGGAGTTCG
CACAGACCGATTACTGGAACGAATTCTTCAAGAAGCGCGGTGAGAAGGCC
TTCGAATGGTACGGCGAATACCTGGAGTTGTGCGACCAGATCCACAAATA
CATCAAGCCGGCGGATAGGATTTTGATGCTGGGATGCGGTAACTCCAAAT
TGAGCATGGATATGTACGACACAGGATTTCGGGATATCACAAACATAGAT
ATATCTCCCATCGCTGTGAAGAAAATGCTGGAACTGAATGCCAAATCGCG
GCCGGAAATGAAGTTTCTGCAAATGGACGCGACAGCAATGACGTTCCCGG
ATGAAAGCTTTTCGGTGTCGTTGGACAAGGGAACGCTGGATGCTCTGTTT
GCCGACGACGAACCTGAAACGAGAGCGGTGGTGGAAAACTATTTCAAGGA
AATACTAAGAACCATGAGGAACGGTGGTCGCTATGTGGGTATCTCCCTGC
TGCAAGAGCACATCCTCAATTTCCTACTGGACTTCCTGCCCAAGCACAAT
TGCATGCTGAGGATTGTTCACTGCTTGGGGGTGGAACAGGCCAACAAAGA
GAAGAATGCCGATGATGCCTTGACGCTGCCTGTTTTCGTAGTCGTCGCTA
CTAAATTTAAGAGCCTTCCAATGCCAGTACTCGAATTTGGTTTCGGCAAC
GACAAGATGCAAAGATTCACCACGGTCTCCGAACTGAATAGCGCAGTTTC
ATCAGTCCAAAAGGCCGCTTTGGTTTGCAACGGTCTAGCCAGATCCAACA
TAGCTGGTCACAATGAGGTGATCATGGATCTGCACCGACCATCTGAGCAA
ACCCCTCGCTATACTATCCACATACTGGATAAGCCGCCAGCTCGCGGCCT
GGGCAAATACGCGGCGTTTATCGTTCCTCAGGGAAGAGAGGTGGAGTGGA
TTTTTTCCACGCCTGCGGGCCGGAAAAAGCTCCAGGACTCCGCCAACTTC
CAACGACTGGCTGTGGTTACCCTTCATAGAGATCAGGTTTACAGTACCTT
AGACGAAGTGAAGCAAGAGTTGGCCGACAGCATAAAGAACCTATCGCCAG
CTGGACTCACTGATCAGATACCGTATCTAAGTCTTGGATCCGATGTGGGC
AAAAGGGAGACTCTTATTTGTGGGTTCTCTAAGATATCTGGAGATTTCCG
CATCGAGGAAGTGGAGGCCAATGGCAAGACCCTGCGACGCCTTATTTTTC
TCAGCAATCAGTTTGTTGTGCAATCGGAAGCCTTAGTTAAAACAGTCAAA
ATCAAAGGCAAAAAGGATCGAAAGAAGATTGACTTCGGCTACCTAGCCTG
CCAGCATCATTTGTACATGTCCGTGGGTGTCCAACTGGCCACAACGGTGC
AGCATCCCAAAAGAGATGTGGAAAAGGATGTTCTCGTCGTCGGCTTGGGA
GGCGGCGGTCTGTGCAGCTTTCTTCACGCCGCTTTGCCGCAAGCTAGAAT
AACGGCCGTCGAAATTGATCCTATAATGTTGGAGGTGGCTGAGCAGTATT
TTGAGCTCAAGCAGGACAAACGCTTTCATGTGGTTATCGATGATGGCTTG
GATTTCGTTGAGCGATGTCGCAATGAAGATATCCACTTCGATGCCGTGTT
GTTCGATGTAGACAGCAAGGATCTCAGTTTGGGAATGAGTTGTCCGCCCC
AAAGCTTCCTAGCTACGAAGATCCTGCAGCACATAAAGGAGATTATCGGT
CCGAAAGGTCTCTTTATGCTAAATCTCGTGTGTCGCGATGAGAGCCTTCG
CACAGAGGCTCTCAACAATCTGCACAAAGTCTTTCCTGCTGTGTGCAGCT
ACAAACTAGAGGAAGACATCAACGAGATAATATATTGTGCCAACGATGAA
AAGTACAAAACTGTCGAGCAGTGGAAGAAAAACATGGGAACCGCTGGTCG
AGGATTAAACAGTGCCGTCAAGGAGACAAAGCTGGCTAGTGAAGACGCCC
TTGAGGTGGCAGAGTTCCTCAGCGAGTTGAAAATATAAAAGCTTTCTAGA
CCAT
BS05049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2614-RA | 2022 | CG2614-PA | 1..2022 | 17..2038 | 10110 | 100 | Plus |
CG2614-RC | 2010 | CG2614-PC | 1..2010 | 17..2038 | 9895 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2614-RA | 2246 | CG2614-RA | 84..2106 | 16..2038 | 10115 | 100 | Plus |
CG2614-RC | 2234 | CG2614-RC | 84..2094 | 16..2038 | 9900 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20657537..20658155 | 677..1295 | 3095 | 100 | Plus |
2L | 23513712 | 2L | 20658667..20659078 | 1627..2038 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 20656972..20657210 | 231..469 | 1195 | 100 | Plus |
2L | 23513712 | 2L | 20657262..20657477 | 463..678 | 1065 | 99.5 | Plus |
2L | 23513712 | 2L | 20658210..20658405 | 1294..1489 | 980 | 100 | Plus |
2L | 23513712 | 2L | 20658462..20658601 | 1489..1628 | 700 | 100 | Plus |
2L | 23513712 | 2L | 20656707..20656831 | 108..232 | 625 | 100 | Plus |
2L | 23513712 | 2L | 20656509..20656606 | 16..113 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:56:27 has no hits.
BS05049.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:41 Download gff for
BS05049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-RA | 83..2095 | 17..2029 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:22 Download gff for
BS05049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-RA | 85..2097 | 17..2029 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:52 Download gff for
BS05049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2614-RA | 85..2097 | 17..2029 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:52 Download gff for
BS05049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20656510..20656601 | 17..108 | 100 | -> | Plus |
2L | 20656708..20656830 | 109..231 | 100 | -> | Plus |
2L | 20656973..20657209 | 232..468 | 100 | -> | Plus |
2L | 20657268..20657475 | 469..676 | 100 | -> | Plus |
2L | 20657537..20658155 | 677..1295 | 100 | -> | Plus |
2L | 20658212..20658404 | 1296..1488 | 100 | -> | Plus |
2L | 20658462..20658601 | 1489..1628 | 100 | -> | Plus |
2L | 20658669..20659069 | 1629..2029 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:22 Download gff for
BS05049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20656510..20656601 | 17..108 | 100 | -> | Plus |
arm_2L | 20656708..20656830 | 109..231 | 100 | -> | Plus |
arm_2L | 20656973..20657209 | 232..468 | 100 | -> | Plus |
arm_2L | 20657268..20657475 | 469..676 | 100 | -> | Plus |
arm_2L | 20657537..20658155 | 677..1295 | 100 | -> | Plus |
arm_2L | 20658212..20658404 | 1296..1488 | 100 | -> | Plus |
arm_2L | 20658462..20658601 | 1489..1628 | 100 | -> | Plus |
arm_2L | 20658669..20659069 | 1629..2029 | 100 | | Plus |
BS05049.pep Sequence
Translation from 16 to 2037
> BS05049.pep
MNLLPKTREEFAQTDYWNEFFKKRGEKAFEWYGEYLELCDQIHKYIKPAD
RILMLGCGNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKF
LQMDATAMTFPDESFSVSLDKGTLDALFADDEPETRAVVENYFKEILRTM
RNGGRYVGISLLQEHILNFLLDFLPKHNCMLRIVHCLGVEQANKEKNADD
ALTLPVFVVVATKFKSLPMPVLEFGFGNDKMQRFTTVSELNSAVSSVQKA
ALVCNGLARSNIAGHNEVIMDLHRPSEQTPRYTIHILDKPPARGLGKYAA
FIVPQGREVEWIFSTPAGRKKLQDSANFQRLAVVTLHRDQVYSTLDEVKQ
ELADSIKNLSPAGLTDQIPYLSLGSDVGKRETLICGFSKISGDFRIEEVE
ANGKTLRRLIFLSNQFVVQSEALVKTVKIKGKKDRKKIDFGYLACQHHLY
MSVGVQLATTVQHPKRDVEKDVLVVGLGGGGLCSFLHAALPQARITAVEI
DPIMLEVAEQYFELKQDKRFHVVIDDGLDFVERCRNEDIHFDAVLFDVDS
KDLSLGMSCPPQSFLATKILQHIKEIIGPKGLFMLNLVCRDESLRTEALN
NLHKVFPAVCSYKLEEDINEIIYCANDEKYKTVEQWKKNMGTAGRGLNSA
VKETKLASEDALEVAEFLSELKI*
BS05049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2614-PA | 673 | CG2614-PA | 1..673 | 1..673 | 3475 | 100 | Plus |
CG2614-PC | 669 | CG2614-PC | 1..669 | 1..673 | 3442 | 99.4 | Plus |