Clone Sequence Records
BS05050.3prime Sequence
890 bp (816 high quality bases) assembled on 2005-12-02
> BS05050.3prime
ATGGTCTAGAAAGCTTTTACTTTTCCGCGGGAATAGCTTGTGGAGTCGAC
CGGTTGCCAGCCAGCTCCTGCTGAATCTCGTTGAGACTCTTGCCCTTGGT
TTCCGGCACGGCGAAATAAACGAATATCACACCCACAACAGTCAGACCAG
CGAATAGCCAGAAGGTTCCGCCAATTCCCAGGCCATCGTTCAAGTTCACA
AACGTCTTGGTCACCACGAATGCCAAAAGCCAGTTGGATGTTCCGGCCAG
CGATCCAGCAAATCCCTTGATGTCGGTGGCGAAGAGCTCTCCCATCATCA
GCCATGGCACCGGTCCATAGCCGATCGAGAACATGATGATGAACAGGCAC
AGACTGGCCACTGGGAGCCAGCCCAGACTCACCACTTGTGCCGCGTCCTG
TTTCTGGAGGAAGAAGTACACTCCGATGGCGGTGGTGGAAATGGCCATGG
AAATTCCTGAGGCCAACAGCAGGATGCGACGGCCCAGCTTGTCTACTACC
AGGGTGGAGACGAAGGTGGCCACCACTTGCATGATACCGATCAGGATCGT
TGCCCACTCAGCCTCGATGCCAGTGTTGGCTTCCAAAAAGATCCTCGAAG
CGTAGAAAATAACAGCATTGATTCCGCAGACCTGCTGGAAGAACATAAGA
CCCATGCTGATGGCCAAAGCCTTCCGGGTGACGGGTCGGTTCAGAGCAGC
CCACACGTTGACCTTGTTGGCCTTGGTTTCCCGGTCGGTTTCACGCAGCT
CCGCCAGCTCTGGCTCGTAATCGTATTCCTTGCCACGCAGCCATTGAATG
GACTTGATGGCGTTCTCCGACCGATCTTTGGAAACCAAGTAGGTGGGCGA
TTCCGGCATGAAAAAGAAGATGGCGCCAAAGATGAAGGGC
BS05050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10960-PC | 1416 | CG10960-RC | 548..1416 | 885..17 | 4345 | 100 | Minus |
| CG10960-PB | 1620 | CG10960-RB | 752..1620 | 885..17 | 4345 | 100 | Minus |
| CG10960-PA | 1416 | CG10960-RA | 548..1416 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10960-RA | 2355 | CG10960-RA | 623..1497 | 890..16 | 4360 | 99.9 | Minus |
| CG10960-RB | 2968 | CG10960-RB | 1236..2110 | 890..16 | 4360 | 99.9 | Minus |
| CG10960-RC | 2664 | CG10960-RC | 932..1806 | 890..16 | 4360 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12825738..12826306 | 16..584 | 2845 | 100 | Plus |
| 3L | 28110227 | 3L | 12826375..12826628 | 583..836 | 1270 | 100 | Plus |
| 3L | 28110227 | 3L | 12826960..12827016 | 834..890 | 270 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:30:12 has no hits.
BS05050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:34 Download gff for
BS05050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-PB | 747..1620 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:46 Download gff for
BS05050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-PA | 543..1416 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:49:51 Download gff for
BS05050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RC | 932..1806 | 16..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:23 Download gff for
BS05050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RC | 932..1806 | 16..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:23 Download gff for
BS05050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12826962..12827016 | 836..890 | 98 | | Plus |
| 3L | 12825738..12826305 | 16..583 | 100 | <- | Plus |
| 3L | 12826376..12826627 | 584..835 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:49:51 Download gff for
BS05050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12818838..12819405 | 16..583 | 100 | <- | Plus |
| arm_3L | 12819476..12819727 | 584..835 | 100 | <- | Plus |
| arm_3L | 12820062..12820116 | 836..890 | 98 | | Plus |
BS05050.5prime Sequence
921 bp (820 high quality bases) assembled on 2005-11-29
> BS05050.5prime
GAAGTTATCAGTCGACATGTCCACCGCATCGTCGAGCAACTCCAGCGGCG
AGGAGGCCAACAAAAAGTCCGGCTCCAACAACGAGGAGAGCTCCCACCTG
CTGGAATCCGCCGAAAATGGAGCCAAGTACGGCTCCAGACAGCCGGTCAA
AATCGTCAAAGCCAGCGATAATGGACGCACCAGCTCCACACCACATGATC
AGGAGAATCTACTGGGCAACATGGTGCACACGTCTACTTCGAATAACTCC
CAGAAGTGGCCACAATATGTGGCCGCATTGGCCGCTGCTGGTGGCGCCTT
CGCCGCCGGTACCGTCCTGGGTTGGACATCGCCGGCCGAAACGGAGATCG
TGGATCGCGGCGAAGGATACGATTTCCCTGTCGACAAGGATCAGTTTTCG
TGGGTAGGATCTGCCATGACCCTGGGTGCCGCCTGTGTGTGCATTCCCAT
TGGCTTCCTGATCAACATGATTGGCCGAAAGTGGACCATGCTGTTTCTGG
TACTGCCCTTCATTCTCGGTTGGACCATGCTCATCTGGGCGGTCAATGTC
AGTATGCTGTATGCCTCGCGCTTCATCCTCGGTATCGCCGGTGGAGCTTT
CTGTGTGACCGCTCCCATGTACACGGGTGAGATTGCTCAGAAGGAGATTC
GCGGAACGCTGGGCAGCTTCTTCCAGTTGATGATAACCATTGGTATCCTG
TTCGTCTATGCCGTCGGAGCTGGTGTGAAAATATTCTGGTTGAGCATCAT
TTGCGGCATTCTGCCCCTCATCTTTGGCGCCATCTTCTTTTTCATGCCGG
AATCGCCCACCTACTTGGTTTCCAAAGATCGGTCGGAGAACGCCATCAAG
TCCATTCAATGGCTGCGTGGCAAGGAATACGATTACGAGCCAGAGCTGGC
GGAGCTGCGTGAAACCGACCG
BS05050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10960-PB | 1620 | CG10960-RB | 1..905 | 17..921 | 4500 | 99.8 | Plus |
| CG10960-PC | 1416 | CG10960-RC | 1..701 | 221..921 | 3480 | 99.8 | Plus |
| CG10960-PA | 1416 | CG10960-RA | 1..701 | 221..921 | 3480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10960-RB | 2968 | CG10960-RB | 485..1394 | 12..921 | 4520 | 99.8 | Plus |
| CG10960-RC | 2664 | CG10960-RC | 365..1090 | 196..921 | 3615 | 99.9 | Plus |
| CG10960-RA | 2355 | CG10960-RA | 57..781 | 197..921 | 3610 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12826960..12827582 | 819..197 | 3100 | 99.8 | Minus |
| 3L | 28110227 | 3L | 12831882..12832067 | 197..12 | 915 | 99.5 | Minus |
| 3L | 28110227 | 3L | 12826524..12826628 | 921..817 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:20:49 has no hits.
BS05050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:36 Download gff for
BS05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-PB | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:48 Download gff for
BS05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-PB | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:39 Download gff for
BS05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 485..1394 | 12..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:04 Download gff for
BS05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 485..1394 | 12..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:04 Download gff for
BS05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12826524..12826627 | 818..921 | 100 | <- | Minus |
| 3L | 12826962..12827582 | 197..817 | 99 | <- | Minus |
| 3L | 12831883..12832067 | 12..196 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:39 Download gff for
BS05050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12819624..12819727 | 818..921 | 100 | <- | Minus |
| arm_3L | 12820062..12820682 | 197..817 | 99 | <- | Minus |
| arm_3L | 12824983..12825167 | 12..196 | 99 | | Minus |
BS05050.complete Sequence
1652 bp (1652 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635050
> BS05050.complete
GAAGTTATCAGTCGACATGTCCACCGCATCGTCGAGCAACTCCAGCGGCG
AGGAGGCCAACAAAAAGTCCGGCTCCAACAACGAGGAGAGCTCCCACCTG
CTGGAATCCGCCGAAAATGGAGCCAAGTACGGCTCCAGACAGCCGGTCAA
AATCGTCAAAGCCAGCGATAATGGACGCACCAGCTCCACACCACATGATC
AGGAGAATCTACTGGGCAACATGGTGCACACGTCTACTTCGAATAACTCC
CAGAAGTGGCCACAATATGTGGCCGCATTGGCCGCTGCTGGTGGCGCCTT
CGCCGCCGGTACCGTCCTGGGTTGGACATCGCCGGCCGAAACGGAGATCG
TGGATCGCGGCGAAGGATACGATTTCCCTGTCGACAAGGATCAGTTTTCG
TGGGTAGGATCTGCCATGACCCTGGGTGCCGCCTGTGTGTGCATTCCCAT
TGGCTTCCTGATCAACATGATTGGCCGAAAGTGGACCATGCTGTTTCTGG
TACTGCCCTTCATTCTCGGTTGGACCATGCTCATCTGGGCGGTCAATGTC
AGTATGCTGTATGCCTCGCGCTTCATCCTCGGTATCGCCGGTGGAGCTTT
CTGTGTGACCGCTCCCATGTACACGGGTGAGATTGCTCAGAAGGAGATTC
GCGGAACGCTGGGCAGCTTCTTCCAGTTGATGATAACCATTGGTATCCTG
TTCGTCTATGCCGTCGGAGCTGGTGTGAAAATATTCTGGTTGAGCATCAT
TTGCGGCATTCTGCCCCTCATCTTTGGCGCCATCTTCTTTTTCATGCCGG
AATCGCCCACCTACTTGGTTTCCAAAGATCGGTCGGAGAACGCCATCAAG
TCCATTCAATGGCTGCGTGGCAAGGAATACGATTACGAGCCAGAGCTGGC
GGAGCTGCGTGAAACCGACCGGGAAACCAAGGCCAACAAGGTCAACGTGT
GGGCTGCTCTGAACCGACCCGTCACCCGGAAGGCTTTGGCCATCAGCATG
GGTCTTATGTTCTTCCAGCAGGTCTGCGGAATCAATGCTGTTATTTTCTA
CGCTTCGAGGATCTTTTTGGAAGCCAACACTGGCATCGAGGCTGAGTGGG
CAACGATCCTGATCGGTATCATGCAAGTGGTGGCCACCTTCGTCTCCACC
CTGGTAGTAGACAAGCTGGGCCGTCGCATCCTGCTGTTGGCCTCAGGAAT
TTCCATGGCCATTTCCACCACCGCCATCGGAGTGTACTTCTTCCTCCAGA
AACAGGACGCGGCACAAGTGGTGAGTCTGGGCTGGCTCCCAGTGGCCAGT
CTGTGCCTGTTCATCATCATGTTCTCGATCGGCTATGGACCGGTGCCATG
GCTGATGATGGGAGAGCTCTTCGCCACCGACATCAAGGGATTTGCTGGAT
CGCTGGCCGGAACATCCAACTGGCTTTTGGCATTCGTGGTGACCAAGACG
TTTGTGAACTTGAACGATGGCCTGGGAATTGGCGGAACCTTCTGGCTATT
CGCTGGTCTGACTGTTGTGGGTGTGATATTCGTTTATTTCGCCGTGCCGG
AAACCAAGGGCAAGAGTCTCAACGAGATTCAGCAGGAGCTGGCTGGCAAC
CGGTCGACTCCACAAGCTATTCCCGCGGAAAAGTAAAAGCTTTCTAGACC
AT
BS05050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10960-RB | 1620 | CG10960-PB | 1..1620 | 17..1636 | 8085 | 99.9 | Plus |
| CG10960-RA | 1416 | CG10960-PA | 1..1416 | 221..1636 | 7065 | 99.9 | Plus |
| CG10960-RC | 1416 | CG10960-PC | 1..1416 | 221..1636 | 7065 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10960-RB | 2968 | CG10960-RB | 485..2110 | 12..1637 | 8100 | 99.9 | Plus |
| CG10960-RC | 2664 | CG10960-RC | 365..1806 | 196..1637 | 7195 | 99.9 | Plus |
| CG10960-RA | 2355 | CG10960-RA | 57..1497 | 197..1637 | 7190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12826960..12827582 | 819..197 | 3100 | 99.8 | Minus |
| 3L | 28110227 | 3L | 12825738..12826306 | 1637..1069 | 2845 | 100 | Minus |
| 3L | 28110227 | 3L | 12826375..12826628 | 1070..817 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 12831882..12832067 | 197..12 | 915 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:42:29 has no hits.
BS05050.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:08 Download gff for
BS05050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 1..1620 | 17..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:32 Download gff for
BS05050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 433..2058 | 12..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:58 Download gff for
BS05050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 490..2101 | 17..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:09 Download gff for
BS05050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 433..2058 | 12..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:36 Download gff for
BS05050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 490..2101 | 17..1628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:36 Download gff for
BS05050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12825747..12826305 | 1070..1628 | 100 | <- | Minus |
| 3L | 12826376..12826627 | 818..1069 | 100 | <- | Minus |
| 3L | 12826962..12827582 | 197..817 | 99 | <- | Minus |
| 3L | 12831883..12832062 | 17..196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:58 Download gff for
BS05050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12818847..12819405 | 1070..1628 | 100 | <- | Minus |
| arm_3L | 12819476..12819727 | 818..1069 | 100 | <- | Minus |
| arm_3L | 12820062..12820682 | 197..817 | 99 | <- | Minus |
| arm_3L | 12824983..12825162 | 17..196 | 100 | | Minus |
BS05050.pep Sequence
Translation from 16 to 1635
> BS05050.pep
MSTASSSNSSGEEANKKSGSNNEESSHLLESAENGAKYGSRQPVKIVKAS
DNGRTSSTPHDQENLLGNMVHTSTSNNSQKWPQYVAALAAAGGAFAAGTV
LGWTSPAETEIVDRGEGYDFPVDKDQFSWVGSAMTLGAACVCIPIGFLIN
MIGRKWTMLFLVLPFILGWTMLIWAVNVSMLYASRFILGIAGGAFCVTAP
MYTGEIAQKEIRGTLGSFFQLMITIGILFVYAVGAGVKIFWLSIICGILP
LIFGAIFFFMPESPTYLVSKDRSENAIKSIQWLRGKEYDYEPELAELRET
DRETKANKVNVWAALNRPVTRKALAISMGLMFFQQVCGINAVIFYASRIF
LEANTGIEAEWATILIGIMQVVATFVSTLVVDKLGRRILLLASGISMAIS
TTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGYGPVPWLMMGE
LFATDIKGFAGSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFAGLTV
VGVIFVYFAVPETKGKSLNEIQQELAGNRSTPQAIPAEK*
BS05050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10960-PB | 539 | CG10960-PB | 1..539 | 1..539 | 2766 | 100 | Plus |
| CG10960-PA | 471 | CG10960-PA | 1..471 | 69..539 | 2425 | 100 | Plus |
| CG10960-PC | 471 | CG10960-PC | 1..471 | 69..539 | 2425 | 100 | Plus |
| CG6484-PA | 465 | CG6484-PA | 8..455 | 82..529 | 1239 | 51.7 | Plus |
| sut4-PA | 444 | CG1380-PA | 6..439 | 83..525 | 1098 | 48.3 | Plus |
