Clone BS05052 Report

Search the DGRC for BS05052

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG4080-RA
Protein status:BS05052.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05052.3prime Sequence

893 bp (842 high quality bases) assembled on 2005-12-02

> BS05052.3prime
ATGGTCTAGAAAGCTTTCACTTCTGGAGTAGACTTTCACAGCTGCTGCTG
AGATTTGGCAACGACTTGAAACTGAGCCGCGAGCGATCCACCTGGGCGTC
CGAGGGACCGTAGCCCCTGCTGCTCTTGCTGCTGCTGACCCCATTCACTC
CGCGGTCAAAGGATGAGGAGATCACAAGCTGATGGGAATTCCGCTGCTTC
TGCTGGCTGCTGGCATAGGCGGCAGGTGGTGATAGTGGCGATGTGGGCAG
GTCGATATCCAGCACGGTATCCGCTTCGCCGGCCTTCAGCTTGGGATCCG
AGTAGCGACGTAGTTCCTCCTTCGTCGGCTGACCACCTAAACAATCAGTG
GTGCAGCAACCAATGGGCAAATCAACGCCCATTATCCCAGAGTGACGGTA
GTCGATCTTTGGCGGCGTGCTGTAATCGTAAGGATGTACGGCAGTATCGG
GACCCACGCTGGTCTGATCGCTCAGCACATCGCGGTTCTCGAGAAAGATG
GACGAGTTGGAGTAGCGCTTTGTCTGGTGCGGCTTGTAAACAAATCCGCC
TAGCCCGTTGGCTACTGCATGCGATACTCCGGAACTGATCGAGGGTGCCT
TGTGCTCGCCACTACCACTAAAGCTGCTTAATTGCAGAGCGTGCTCGCGG
CCTGTATCCGTGGAAATGCCGCTGGCACTGAGATCCTGCCGTGATCCGGC
GCACAGATCCGTAGCAGAGCCGCGACTAGAGCCCTCCGAATGCTCCAGCA
CGTTGTGTATGGAGTCGTGGAAGGGCGTCATGCTGCCCGATCCCTGAGGA
CAGGGTCGGAATGATGAGATCTGCGAGACCACATCATCGAGGGCCCAGTC
GCGATCGTAATTGTGCTGTGACTGCGAGCACTCGATATTGGCG

BS05052.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-PA 1854 CG4080-RA 978..1854 893..17 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-RB 3453 CG4080-RB 1619..2497 893..15 4395 100 Minus
CG4080-RA 2771 CG4080-RA 1619..2497 893..15 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9387783..9388384 15..616 3010 100 Plus
3L 28110227 3L 9388440..9388719 614..893 1400 100 Plus
Blast to na_te.dros performed 2015-02-11 11:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1513..1589 563..485 119 64.6 Minus

BS05052.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:39 Download gff for BS05052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-PA 978..1854 17..893 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:51 Download gff for BS05052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-PA 978..1854 17..893 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:13:37 Download gff for BS05052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 1619..2497 15..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:55 Download gff for BS05052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 1619..2497 15..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:55 Download gff for BS05052.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9387783..9388383 15..615 100 <- Plus
3L 9388442..9388719 616..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:13:37 Download gff for BS05052.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9380883..9381483 15..615 100 <- Plus
arm_3L 9381542..9381819 616..893 100   Plus

BS05052.5prime Sequence

887 bp (840 high quality bases) assembled on 2005-12-02

> BS05052.5prime
GAAGTTATCAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATA
TCGAGCATGTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTC
GGTTCGGGCAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCAT
CTGCCACTGCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATT
GCTCCGGCAGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTC
ACCGCCTCCGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCAT
GCACACCAAGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCG
GCATTGAAAGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCA
GCCCTGTGCGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGA
CGATGTCCAGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCG
TTGTCACCGTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGC
AAGGCATATCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCT
ACTGATTCAGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCC
CAGTGGCCGCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGA
TCGACGAGCGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATA
CTGTGCCCACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTG
CCGAAATGGGTCTACATCAGCAAATGCAGCGCCTACTAAATGCCTCGCCA
CATCATATGCTTTCAATGGCCGCTGAACTAGAGGTGC

BS05052.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-PA 1854 CG4080-RA 1..871 17..887 4305 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-RB 3453 CG4080-RB 642..1512 17..887 4325 99.8 Plus
CG4080-RA 2771 CG4080-RA 642..1512 17..887 4325 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9388826..9389122 887..591 1455 99.3 Minus
3L 28110227 3L 9390567..9390801 328..94 1175 100 Minus
3L 28110227 3L 9390281..9390427 473..327 735 100 Minus
3L 28110227 3L 9390002..9390124 594..472 615 100 Minus
3L 28110227 3L 9398507..9398586 96..17 400 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:45:21 has no hits.

BS05052.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:40 Download gff for BS05052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:52 Download gff for BS05052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:20:12 Download gff for BS05052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 642..1512 17..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:01 Download gff for BS05052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 642..1512 17..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:01 Download gff for BS05052.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9388826..9389118 595..887 99 <- Minus
3L 9390002..9390122 474..594 100 <- Minus
3L 9390281..9390425 329..473 100 <- Minus
3L 9390567..9390798 97..328 100 <- Minus
3L 9398507..9398586 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:20:12 Download gff for BS05052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9381926..9382218 595..887 99 <- Minus
arm_3L 9383102..9383222 474..594 100 <- Minus
arm_3L 9383381..9383525 329..473 100 <- Minus
arm_3L 9383667..9383898 97..328 100 <- Minus
arm_3L 9391607..9391686 17..96 100   Minus

BS05052.complete Sequence

1886 bp assembled on 2008-01-02

GenBank Submission: FJ635051

> BS05052.complete
GAAGTTATCAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATA
TCGAGCATGTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTC
GGTTCGGGCAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCAT
CTGCCACTGCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATT
GCTCCGGCAGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTC
ACCGCCTCCGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCAT
GCACACCAAGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCG
GCATTGAAAGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCA
GCCCTGTGCGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGA
CGATGTCCAGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCG
TTGTCACCGTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGC
AAGGCATATCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCT
ACTGATTCAGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCC
CAGTGGCCGCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGA
TCGACGAGCGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATA
CTGTGCCCACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTG
CCGAAATGGGTCTACATCAGCAAATGCAGCGCCTACTAAATGCCTCGCCA
CATCATATGCTTCAAATGGCCGCTGAACTAGAGGTGCCGCACAGCAGCAG
CAGTGCCTGCACGCAGACGGAGGACGGACATGGCCACCAGCGGCACCAGC
AGATGCAGCAGAGCGGCCAGCAATTGGGCCAAGTGGCGGTGGCCGCCAAT
ATCGAGTGCTCGCAGTCACAGCACAATTACGATCGCGACTGGGCCCTCGA
TGATGTGGTCTCGCAGATCTCATCATTCCGACCCTGTCCTCAGGGATCGG
GCAGCATGACGCCCTTCCACGACTCCATACACAACGTGCTGGAGCATTCG
GAGGGCTCTAGTCGCGGCTCTGCTACGGATCTGTGCGCCGGATCACGGCA
GGATCTCAGTGCCAGCGGCATTTCCACGGATACAGGCCGCGAGCACGCTC
TGCAATTAAGCAGCTTTAGTGGTAGTGGCGAGCACAAGGCACCCTCGATC
AGTTCCGGAGTATCGCATGCAGTAGCCAACGGGCTAGGCGGATTTGTTTA
CAAGCCGCACCAGACAAAGCGCTACTCCAACTCGTCCATCTTTCTCGAGA
ACCGCGATGTGCTGAGCGATCAGACCAGCGTGGGTCCCGATACTGCCGTA
CATCCTTACGATTACAGCACGCCGCCAAAGATCGACTACCGTCACTCTGG
GATAATGGGCGTTGATTTGCCCATTGGTTGCTGCACCACTGATTGTTTAG
GTGGTCAGCCGACGAAGGAGGAACTACGTCGCTACTCGGATCCCAAGCTG
AAGGCCGGCGAAGCGGATACCGTGCTGGATATCGACCTGCCCACATCGCC
ACTATCACCACCTGCCGCCTATGCCAGCAGCCAGCAGAAGCAGCGGAATT
CCCATCAGCTTGTGATCTCCTCATCCTTTGACCGCGGAGTGAATGGGGTC
AGCAGCAGCAAGAGCAGCAGGGGCTACGGTCCCTCGGACGCCCAGGTGGA
TCGCTCGCGGCTCAGTTTCAAGTCGTTGCCAAATCTCAGCAGCAGCTGTG
AAAGTCTACTCCAGAAGTGAAAGCTTTCTAGACCAT

BS05052.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-RB 1854 CG4080-PB 1..1854 17..1870 9270 100 Plus
CG4080-RA 1854 CG4080-PA 1..1854 17..1870 9270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-RB 3453 CG4080-RB 642..2497 17..1872 9280 100 Plus
CG4080-RA 2771 CG4080-RA 642..2497 17..1872 9280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9388440..9389122 1273..591 3415 100 Minus
3L 28110227 3L 9387783..9388384 1872..1271 3010 100 Minus
3L 28110227 3L 9390567..9390801 328..94 1175 100 Minus
3L 28110227 3L 9390281..9390427 473..327 735 100 Minus
3L 28110227 3L 9390002..9390124 594..472 615 100 Minus
3L 28110227 3L 9398507..9398586 96..17 400 100 Minus
Blast to na_te.dros performed 2014-11-28 07:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 652..752 981..867 130 62.6 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 1513..1589 1324..1402 119 64.6 Plus

BS05052.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:29 Download gff for BS05052.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 1..1854 17..1870 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:41 Download gff for BS05052.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 665..2517 17..1869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:13 Download gff for BS05052.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 642..2494 17..1869 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:29 Download gff for BS05052.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 665..2520 17..1872 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:25 Download gff for BS05052.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 642..2494 17..1869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:25 Download gff for BS05052.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9390002..9390122 474..594 100 <- Minus
3L 9390281..9390425 329..473 100 <- Minus
3L 9390567..9390798 97..328 100 <- Minus
3L 9398507..9398586 17..96 100   Minus
3L 9387786..9388383 1272..1869 100 <- Minus
3L 9388442..9389118 595..1271 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:13 Download gff for BS05052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9380886..9381483 1272..1869 100 <- Minus
arm_3L 9381542..9382218 595..1271 100 <- Minus
arm_3L 9383102..9383222 474..594 100 <- Minus
arm_3L 9383381..9383525 329..473 100 <- Minus
arm_3L 9383667..9383898 97..328 100 <- Minus
arm_3L 9391607..9391686 17..96 100   Minus

BS05052.pep Sequence

Translation from 16 to 1869

> BS05052.pep
MPCDNAKTSSDIEHVDWNSGQHYANVRFGSGSSQASQNSGDICRICHCES
DPQNPLLTPCYCSGSLKYVHQACLQQWLTASETNSCELCKFPFIMHTKIK
PFNEWRSLDISGIERRRLCYSVLFHCAAALCVIWSLCVLIERAADDVQRG
LIDWPFWTKLAVVTVGLTGGIVFMYIQCKAYLHLCHRWKARNRILLIQNA
PEKIHPVAPPSPVAAHHQHFSEPLAHAGSTSGAVEINASGAAGGYCAHEA
NCASMDNGGGGAEMGLHQQMQRLLNASPHHMLQMAAELEVPHSSSSACTQ
TEDGHGHQRHQQMQQSGQQLGQVAVAANIECSQSQHNYDRDWALDDVVSQ
ISSFRPCPQGSGSMTPFHDSIHNVLEHSEGSSRGSATDLCAGSRQDLSAS
GISTDTGREHALQLSSFSGSGEHKAPSISSGVSHAVANGLGGFVYKPHQT
KRYSNSSIFLENRDVLSDQTSVGPDTAVHPYDYSTPPKIDYRHSGIMGVD
LPIGCCTTDCLGGQPTKEELRRYSDPKLKAGEADTVLDIDLPTSPLSPPA
AYASSQQKQRNSHQLVISSSFDRGVNGVSSSKSSRGYGPSDAQVDRSRLS
FKSLPNLSSSCESLLQK*

BS05052.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-PB 617 CG4080-PB 1..617 1..617 3307 100 Plus
CG4080-PA 617 CG4080-PA 1..617 1..617 3307 100 Plus
CG1317-PD 988 CG1317-PD 5..60 38..93 194 51.8 Plus
CG1317-PC 988 CG1317-PC 5..60 38..93 194 51.8 Plus
CG13442-PA 425 CG13442-PA 148..379 25..239 192 26.9 Plus