Clone Sequence Records
BS05052.3prime Sequence
893 bp (842 high quality bases) assembled on 2005-12-02
> BS05052.3prime
ATGGTCTAGAAAGCTTTCACTTCTGGAGTAGACTTTCACAGCTGCTGCTG
AGATTTGGCAACGACTTGAAACTGAGCCGCGAGCGATCCACCTGGGCGTC
CGAGGGACCGTAGCCCCTGCTGCTCTTGCTGCTGCTGACCCCATTCACTC
CGCGGTCAAAGGATGAGGAGATCACAAGCTGATGGGAATTCCGCTGCTTC
TGCTGGCTGCTGGCATAGGCGGCAGGTGGTGATAGTGGCGATGTGGGCAG
GTCGATATCCAGCACGGTATCCGCTTCGCCGGCCTTCAGCTTGGGATCCG
AGTAGCGACGTAGTTCCTCCTTCGTCGGCTGACCACCTAAACAATCAGTG
GTGCAGCAACCAATGGGCAAATCAACGCCCATTATCCCAGAGTGACGGTA
GTCGATCTTTGGCGGCGTGCTGTAATCGTAAGGATGTACGGCAGTATCGG
GACCCACGCTGGTCTGATCGCTCAGCACATCGCGGTTCTCGAGAAAGATG
GACGAGTTGGAGTAGCGCTTTGTCTGGTGCGGCTTGTAAACAAATCCGCC
TAGCCCGTTGGCTACTGCATGCGATACTCCGGAACTGATCGAGGGTGCCT
TGTGCTCGCCACTACCACTAAAGCTGCTTAATTGCAGAGCGTGCTCGCGG
CCTGTATCCGTGGAAATGCCGCTGGCACTGAGATCCTGCCGTGATCCGGC
GCACAGATCCGTAGCAGAGCCGCGACTAGAGCCCTCCGAATGCTCCAGCA
CGTTGTGTATGGAGTCGTGGAAGGGCGTCATGCTGCCCGATCCCTGAGGA
CAGGGTCGGAATGATGAGATCTGCGAGACCACATCATCGAGGGCCCAGTC
GCGATCGTAATTGTGCTGTGACTGCGAGCACTCGATATTGGCG
BS05052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-PA | 1854 | CG4080-RA | 978..1854 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-RB | 3453 | CG4080-RB | 1619..2497 | 893..15 | 4395 | 100 | Minus |
CG4080-RA | 2771 | CG4080-RA | 1619..2497 | 893..15 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9387783..9388384 | 15..616 | 3010 | 100 | Plus |
3L | 28110227 | 3L | 9388440..9388719 | 614..893 | 1400 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 11:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1513..1589 | 563..485 | 119 | 64.6 | Minus |
BS05052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:39 Download gff for
BS05052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-PA | 978..1854 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:51 Download gff for
BS05052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-PA | 978..1854 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:13:37 Download gff for
BS05052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 1619..2497 | 15..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:55 Download gff for
BS05052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 1619..2497 | 15..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:55 Download gff for
BS05052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9387783..9388383 | 15..615 | 100 | <- | Plus |
3L | 9388442..9388719 | 616..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:13:37 Download gff for
BS05052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9380883..9381483 | 15..615 | 100 | <- | Plus |
arm_3L | 9381542..9381819 | 616..893 | 100 | | Plus |
BS05052.5prime Sequence
887 bp (840 high quality bases) assembled on 2005-12-02
> BS05052.5prime
GAAGTTATCAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATA
TCGAGCATGTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTC
GGTTCGGGCAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCAT
CTGCCACTGCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATT
GCTCCGGCAGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTC
ACCGCCTCCGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCAT
GCACACCAAGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCG
GCATTGAAAGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCA
GCCCTGTGCGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGA
CGATGTCCAGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCG
TTGTCACCGTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGC
AAGGCATATCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCT
ACTGATTCAGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCC
CAGTGGCCGCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGA
TCGACGAGCGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATA
CTGTGCCCACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTG
CCGAAATGGGTCTACATCAGCAAATGCAGCGCCTACTAAATGCCTCGCCA
CATCATATGCTTTCAATGGCCGCTGAACTAGAGGTGC
BS05052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-PA | 1854 | CG4080-RA | 1..871 | 17..887 | 4305 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-RB | 3453 | CG4080-RB | 642..1512 | 17..887 | 4325 | 99.8 | Plus |
CG4080-RA | 2771 | CG4080-RA | 642..1512 | 17..887 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9388826..9389122 | 887..591 | 1455 | 99.3 | Minus |
3L | 28110227 | 3L | 9390567..9390801 | 328..94 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 9390281..9390427 | 473..327 | 735 | 100 | Minus |
3L | 28110227 | 3L | 9390002..9390124 | 594..472 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9398507..9398586 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:45:21 has no hits.
BS05052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:40 Download gff for
BS05052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:52 Download gff for
BS05052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:20:12 Download gff for
BS05052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 642..1512 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:01 Download gff for
BS05052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 642..1512 | 17..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:01 Download gff for
BS05052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9388826..9389118 | 595..887 | 99 | <- | Minus |
3L | 9390002..9390122 | 474..594 | 100 | <- | Minus |
3L | 9390281..9390425 | 329..473 | 100 | <- | Minus |
3L | 9390567..9390798 | 97..328 | 100 | <- | Minus |
3L | 9398507..9398586 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:20:12 Download gff for
BS05052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9381926..9382218 | 595..887 | 99 | <- | Minus |
arm_3L | 9383102..9383222 | 474..594 | 100 | <- | Minus |
arm_3L | 9383381..9383525 | 329..473 | 100 | <- | Minus |
arm_3L | 9383667..9383898 | 97..328 | 100 | <- | Minus |
arm_3L | 9391607..9391686 | 17..96 | 100 | | Minus |
BS05052.complete Sequence
1886 bp assembled on 2008-01-02
GenBank Submission: FJ635051
> BS05052.complete
GAAGTTATCAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATA
TCGAGCATGTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTC
GGTTCGGGCAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCAT
CTGCCACTGCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATT
GCTCCGGCAGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTC
ACCGCCTCCGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCAT
GCACACCAAGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCG
GCATTGAAAGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCA
GCCCTGTGCGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGA
CGATGTCCAGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCG
TTGTCACCGTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGC
AAGGCATATCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCT
ACTGATTCAGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCC
CAGTGGCCGCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGA
TCGACGAGCGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATA
CTGTGCCCACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTG
CCGAAATGGGTCTACATCAGCAAATGCAGCGCCTACTAAATGCCTCGCCA
CATCATATGCTTCAAATGGCCGCTGAACTAGAGGTGCCGCACAGCAGCAG
CAGTGCCTGCACGCAGACGGAGGACGGACATGGCCACCAGCGGCACCAGC
AGATGCAGCAGAGCGGCCAGCAATTGGGCCAAGTGGCGGTGGCCGCCAAT
ATCGAGTGCTCGCAGTCACAGCACAATTACGATCGCGACTGGGCCCTCGA
TGATGTGGTCTCGCAGATCTCATCATTCCGACCCTGTCCTCAGGGATCGG
GCAGCATGACGCCCTTCCACGACTCCATACACAACGTGCTGGAGCATTCG
GAGGGCTCTAGTCGCGGCTCTGCTACGGATCTGTGCGCCGGATCACGGCA
GGATCTCAGTGCCAGCGGCATTTCCACGGATACAGGCCGCGAGCACGCTC
TGCAATTAAGCAGCTTTAGTGGTAGTGGCGAGCACAAGGCACCCTCGATC
AGTTCCGGAGTATCGCATGCAGTAGCCAACGGGCTAGGCGGATTTGTTTA
CAAGCCGCACCAGACAAAGCGCTACTCCAACTCGTCCATCTTTCTCGAGA
ACCGCGATGTGCTGAGCGATCAGACCAGCGTGGGTCCCGATACTGCCGTA
CATCCTTACGATTACAGCACGCCGCCAAAGATCGACTACCGTCACTCTGG
GATAATGGGCGTTGATTTGCCCATTGGTTGCTGCACCACTGATTGTTTAG
GTGGTCAGCCGACGAAGGAGGAACTACGTCGCTACTCGGATCCCAAGCTG
AAGGCCGGCGAAGCGGATACCGTGCTGGATATCGACCTGCCCACATCGCC
ACTATCACCACCTGCCGCCTATGCCAGCAGCCAGCAGAAGCAGCGGAATT
CCCATCAGCTTGTGATCTCCTCATCCTTTGACCGCGGAGTGAATGGGGTC
AGCAGCAGCAAGAGCAGCAGGGGCTACGGTCCCTCGGACGCCCAGGTGGA
TCGCTCGCGGCTCAGTTTCAAGTCGTTGCCAAATCTCAGCAGCAGCTGTG
AAAGTCTACTCCAGAAGTGAAAGCTTTCTAGACCAT
BS05052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-RB | 1854 | CG4080-PB | 1..1854 | 17..1870 | 9270 | 100 | Plus |
CG4080-RA | 1854 | CG4080-PA | 1..1854 | 17..1870 | 9270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-RB | 3453 | CG4080-RB | 642..2497 | 17..1872 | 9280 | 100 | Plus |
CG4080-RA | 2771 | CG4080-RA | 642..2497 | 17..1872 | 9280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9388440..9389122 | 1273..591 | 3415 | 100 | Minus |
3L | 28110227 | 3L | 9387783..9388384 | 1872..1271 | 3010 | 100 | Minus |
3L | 28110227 | 3L | 9390567..9390801 | 328..94 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 9390281..9390427 | 473..327 | 735 | 100 | Minus |
3L | 28110227 | 3L | 9390002..9390124 | 594..472 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9398507..9398586 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 07:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 652..752 | 981..867 | 130 | 62.6 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1513..1589 | 1324..1402 | 119 | 64.6 | Plus |
BS05052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:29 Download gff for
BS05052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 1..1854 | 17..1870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:41 Download gff for
BS05052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 665..2517 | 17..1869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:13 Download gff for
BS05052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 642..2494 | 17..1869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:29 Download gff for
BS05052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 665..2520 | 17..1872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:25 Download gff for
BS05052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 642..2494 | 17..1869 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:25 Download gff for
BS05052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9390002..9390122 | 474..594 | 100 | <- | Minus |
3L | 9390281..9390425 | 329..473 | 100 | <- | Minus |
3L | 9390567..9390798 | 97..328 | 100 | <- | Minus |
3L | 9398507..9398586 | 17..96 | 100 | | Minus |
3L | 9387786..9388383 | 1272..1869 | 100 | <- | Minus |
3L | 9388442..9389118 | 595..1271 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:13 Download gff for
BS05052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9380886..9381483 | 1272..1869 | 100 | <- | Minus |
arm_3L | 9381542..9382218 | 595..1271 | 100 | <- | Minus |
arm_3L | 9383102..9383222 | 474..594 | 100 | <- | Minus |
arm_3L | 9383381..9383525 | 329..473 | 100 | <- | Minus |
arm_3L | 9383667..9383898 | 97..328 | 100 | <- | Minus |
arm_3L | 9391607..9391686 | 17..96 | 100 | | Minus |
BS05052.pep Sequence
Translation from 16 to 1869
> BS05052.pep
MPCDNAKTSSDIEHVDWNSGQHYANVRFGSGSSQASQNSGDICRICHCES
DPQNPLLTPCYCSGSLKYVHQACLQQWLTASETNSCELCKFPFIMHTKIK
PFNEWRSLDISGIERRRLCYSVLFHCAAALCVIWSLCVLIERAADDVQRG
LIDWPFWTKLAVVTVGLTGGIVFMYIQCKAYLHLCHRWKARNRILLIQNA
PEKIHPVAPPSPVAAHHQHFSEPLAHAGSTSGAVEINASGAAGGYCAHEA
NCASMDNGGGGAEMGLHQQMQRLLNASPHHMLQMAAELEVPHSSSSACTQ
TEDGHGHQRHQQMQQSGQQLGQVAVAANIECSQSQHNYDRDWALDDVVSQ
ISSFRPCPQGSGSMTPFHDSIHNVLEHSEGSSRGSATDLCAGSRQDLSAS
GISTDTGREHALQLSSFSGSGEHKAPSISSGVSHAVANGLGGFVYKPHQT
KRYSNSSIFLENRDVLSDQTSVGPDTAVHPYDYSTPPKIDYRHSGIMGVD
LPIGCCTTDCLGGQPTKEELRRYSDPKLKAGEADTVLDIDLPTSPLSPPA
AYASSQQKQRNSHQLVISSSFDRGVNGVSSSKSSRGYGPSDAQVDRSRLS
FKSLPNLSSSCESLLQK*
BS05052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-PB | 617 | CG4080-PB | 1..617 | 1..617 | 3307 | 100 | Plus |
CG4080-PA | 617 | CG4080-PA | 1..617 | 1..617 | 3307 | 100 | Plus |
CG1317-PD | 988 | CG1317-PD | 5..60 | 38..93 | 194 | 51.8 | Plus |
CG1317-PC | 988 | CG1317-PC | 5..60 | 38..93 | 194 | 51.8 | Plus |
CG13442-PA | 425 | CG13442-PA | 148..379 | 25..239 | 192 | 26.9 | Plus |