Clone BS05054 Report

Search the DGRC for BS05054

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k01209-RB
Protein status:BS05054.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05054.3prime Sequence

920 bp (851 high quality bases) assembled on 2005-12-02

> BS05054.3prime
ATGGTCTAGAAAGCTTTTAGTACTCATCAGAGGGTTCCGTGCCAAAGTAG
CGATCGCCAAAGTTACCAATGCCGGGTATAACATAAAACTTACTATTAAT
CTCCGGATCCAGAGCGGAAGTAACAATTTTCACCTTTGGGAAGGCATAGG
CAATGGAGTGCACACCGATCTCAGCCATCAAAAGCGAGGCCAAGATAATG
TTGTCCTCGGGTACATCGTGATCCAGCAGCACCCGAATGGCCATCATGGC
CGCTGCTCCTGTGGCCACGGTGGCATCCATTAGTATCACCTTGTAGTCTT
TTATGTCTTTAGGCAGCCTCAGGTAGTAAAGCTCCGGCTCGCCGGTCTTA
AGATTGGTCTGGATGAGGATCTTTCCGATGCGAATGTCCTTGCACACATC
ACAAACGGCTTGTTCCATTGTTTCACCAGCTCGGAGAATTGAGACGCCGC
ATATTTTTCGCGATTCCATACGCTTGCCCTCGTAAAGGACACCTTGTGGA
GTCTCCACTGTTGTTTTCTTAAAGGGAAATAAGCTTAGCGCATATTCAAT
GACTAGCCGTATCAGGCGCTTTGAGTAAAAAATAAACTCATCGCGGGACG
TATTTCGGCAACGGATGAACGTGTGCAGGCCCTTTATTTGGGGCGTGGGA
TGCAGCAAGTGCAGAGAATGTGGCATTGGCTGGTCCTTGTAGGAGTTGGC
CAGAGTTTCGCGCAGCTTAAATCCGCGCAGTTGCAGCTGTGTGTGCACGT
GCTGAACAATGAGATGGATGGCCACCTTGTTGTCGCCTCCACGAGGAACA
ATGATATCTGCATGGGCCATTGTTGGAGCTATGTAATTGCAATAGGAGGG
CTTAACCATATTAAGGTATTGCTTCAGCACGCCCTTGAGGTCTCGTCCGC
GCTGAGAGATGTCCCCTTCT

BS05054.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4798-PA 1686 l(2)k01209-RA 788..1686 915..17 4495 100 Minus
CG4798-PB 1881 l(2)k01209-RB 983..1881 915..17 4495 100 Minus
CG4798-PC 1881 l(2)k01209-RC 983..1881 915..17 4495 100 Minus
CG4798-PD 1881 l(2)k01209-RD 983..1881 915..17 4495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 2284 CG4798-RD 1293..2191 915..17 4495 100 Minus
l(2)k01209-RC 2380 CG4798-RC 1389..2287 915..17 4495 100 Minus
l(2)k01209-RB 3254 CG4798-RB 2263..3161 915..17 4495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17424818..17425416 728..130 2995 100 Minus
2R 25286936 2R 17424572..17424759 915..728 940 100 Minus
2R 25286936 2R 17425468..17425586 135..17 595 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:10:39 has no hits.

BS05054.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:43 Download gff for BS05054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4798-PD 979..1881 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:56 Download gff for BS05054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4798-PD 979..1881 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:08 Download gff for BS05054.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 2259..3161 17..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:51 Download gff for BS05054.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 2259..3161 17..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:51 Download gff for BS05054.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17424568..17424759 728..920 97 -> Minus
2R 17424819..17425412 134..727 100 -> Minus
2R 17425470..17425586 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:08 Download gff for BS05054.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13312073..13312264 728..920 97 -> Minus
arm_2R 13312324..13312917 134..727 100 -> Minus
arm_2R 13312975..13313091 17..133 100   Minus

BS05054.5prime Sequence

925 bp (854 high quality bases) assembled on 2005-12-02

> BS05054.5prime
GAAGTTATCAGTCGACATGAGCAGCATCACGTTTTTGTGCAGCAAGTCGG
GCCACAACACCAACAACAACAGCATTAATAGTAGCAATAACGATGTTCCA
AAAGGGGCAAAAGCGAACTCAGCATTTGCAGCCGCATCCGCCGGTTTACT
AACCATCGCAAACCACCAGCAGCAACAGCTACTTCAGCAACCACATCAAC
AGCAGCAGCAACAACAACAACAGCATCATCAGCAGTCAAAGGTTAAGGCT
ATAGCAGCCAAAACCAATGGTCACATCGATGACCGTTCACTCTCGGATGT
CACAGAGCAACTCTATGTGGATCCGTATGCCGACCTAAGCAATGGCTTGC
CCGGGGATCTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTGCTAAA
GCATCGTTGGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGAACCAC
ATCCATTGGCAACCAGACCACCACAGCGAATCCGTCCGAATGCATCATAC
GCGCAAATAACCGCACGATCTACACGGCCGGACGACCGCCGTGGTACAAT
TGTGCTGGGCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGCGGTAG
TGCCTCTGGCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCTAGACG
TTCCATGGGTAACACTGTTGTCCATGGACTGTTTCTACAAGATCCTTAAT
GAGAAACAGCATGAGCAGGCCCTGATCAACGAATATAACTTCGATCACCC
GGATGCCTTCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCTGAAGG
AGGGCCGAAAGGTGGAAGTTCCTGTCTATAATTTTGTGACACATGGTCGT
GAGAGCAAAACGAAAACCATGTACGGGGCCAATGTGATCATCTTCGAGGG
TATTCTTACCTTTTCATAGTCCTGA

BS05054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4798-PB 1881 l(2)k01209-RB 1..897 17..913 4460 99.8 Plus
CG4798-PC 1881 l(2)k01209-RC 1..897 17..913 4460 99.8 Plus
CG4798-PD 1881 l(2)k01209-RD 1..897 17..913 4460 99.8 Plus
CG4798-PA 1686 l(2)k01209-RA 66..702 277..913 3160 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 2284 CG4798-RD 311..1218 17..925 4505 99.8 Plus
l(2)k01209-RC 2380 CG4798-RC 407..1314 17..925 4505 99.8 Plus
l(2)k01209-RB 3254 CG4798-RB 1281..2188 17..925 4505 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17423656..17423964 277..585 1545 100 Plus
2R 25286936 2R 17421687..17421946 17..276 1300 100 Plus
2R 25286936 2R 17424196..17424430 690..925 1115 99.2 Plus
2R 25286936 2R 17424026..17424134 583..691 545 100 Plus
Blast to na_te.dros performed 2015-02-11 11:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2491 20..234 337 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6948 39..240 279 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2583 13..251 244 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..7055 13..227 162 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1588 58..133 124 68.4 Plus
roo 9092 roo DM_ROO 9092bp 1096..1150 39..93 122 69.1 Plus
BS 5142 BS BS 5142bp 1977..2071 20..116 120 59.8 Plus

BS05054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:44 Download gff for BS05054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4798-PD 1..907 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:57 Download gff for BS05054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4798-PD 1..907 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:29:49 Download gff for BS05054.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..2187 17..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:04 Download gff for BS05054.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..2187 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:04 Download gff for BS05054.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17421687..17421946 17..276 100 -> Plus
2R 17423656..17423963 277..584 100 -> Plus
2R 17424028..17424134 585..691 100 -> Plus
2R 17424198..17424429 692..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:29:49 Download gff for BS05054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13309192..13309451 17..276 100 -> Plus
arm_2R 13311161..13311468 277..584 100 -> Plus
arm_2R 13311533..13311639 585..691 100 -> Plus
arm_2R 13311703..13311934 692..924 99   Plus

BS05054.complete Sequence

1913 bp assembled on 2008-01-02

GenBank Submission: FJ635052

> BS05054.complete
GAAGTTATCAGTCGACATGAGCAGCATCACGTTTTTGTGCAGCAAGTCGG
GCCACAACACCAACAACAACAGCATTAATAGTAGCAATAACGATGTTCCA
AAAGGGGCAAAAGCGAACTCAGCATTTGCAGCCGCATCCGCCGGTTTACT
AACCATCGCAAACCACCAGCAGCAACAGCTACTTCAGCAACCACATCAAC
AGCAGCAGCAACAACAACAACAGCATCATCAGCAGTCAAAGGTTAAGGCT
ATAGCAGCCAAAACCAATGGTCACATCGATGACCGTTCACTCTCGGATGT
CACAGAGCAACTCTATGTGGATCCGTATGCCGACCTAAGCAATGGCTTGC
CCGGGGATCTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTGCTAAA
GCATCGTTGGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGAACCAC
ATCCATTGGCAACCAGACCACCACAGCGAATCCGTCCGAATGCATCATAC
GCGCAAATAACCGCACGATCTACACGGCCGGACGACCGCCGTGGTACAAT
TGTGCTGGGCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGCGGTAG
TGCCTCTGGCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCTAGACG
TTCCATGGGTAACACTGTTGTCCATGGACTGTTTCTACAAGATCCTTAAT
GAGAAACAGCATGAGCAGGCCCTGATCAACGAATATAACTTCGATCACCC
GGATGCCTTCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCTGAAGG
AGGGCCGAAAGGTGGAAGTTCCTGTCTATAATTTTGTGACACATGGTCGT
GAGAGCCAAACGAAAACCATGTACGGGGCCAATGTGATCATCTTCGAGGG
TATTCTTACCTTTCATAGTCCTGAAGTACTTAAATTGCTAGACATGAAGA
TATTTGTGGACACAGATCCCGATATTCGTCTGGCCAGGCGGTTAAGAAGG
GACATCTCTCAGCGCGGACGAGACCTCAAGGGCGTGCTGAAGCAATACCT
TAATATGGTTAAGCCCTCCTATTGCAATTACATAGCTCCAACAATGGCCC
ATGCAGATATCATTGTTCCTCGTGGAGGCGACAACAAGGTGGCCATCCAT
CTCATTGTTCAGCACGTGCACACACAGCTGCAACTGCGCGGATTTAAGCT
GCGCGAAACTCTGGCCAACTCCTACAAGGACCAGCCAATGCCACATTCTC
TGCACTTGCTGCATCCCACGCCCCAAATAAAGGGCCTGCACACGTTCATC
CGTTGCCGAAATACGTCCCGCGATGAGTTTATTTTTTACTCAAAGCGCCT
GATACGGCTAGTCATTGAATATGCGCTAAGCTTATTTCCCTTTAAGAAAA
CAACAGTGGAGACTCCACAAGGTGTCCTTTACGAGGGCAAGCGTATGGAA
TCGCGAAAAATATGCGGCGTCTCAATTCTCCGAGCTGGTGAAACAATGGA
ACAAGCCGTTTGTGATGTGTGCAAGGACATTCGCATCGGAAAGATCCTCA
TCCAGACCAATCTTAAGACCGGCGAGCCGGAGCTTTACTACCTGAGGCTG
CCTAAAGACATAAAAGACTACAAGGTGATACTAATGGATGCCACCGTGGC
CACAGGAGCAGCGGCCATGATGGCCATTCGGGTGCTGCTGGATCACGATG
TACCCGAGGACAACATTATCTTGGCCTCGCTTTTGATGGCTGAGATCGGT
GTGCACTCCATTGCCTATGCCTTCCCAAAGGTGAAAATTGTTACTTCCGC
TCTGGATCCGGAGATTAATAGTAAGTTTTATGTTATACCCGGCATTGGTA
ACTTTGGCGATCGCTACTTTGGCACGGAACCCTCTGATGAGTACTAAAAG
CTTTCTAGACCAT

BS05054.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 1881 CG4798-PD 1..1881 17..1897 9405 100 Plus
l(2)k01209-RC 1881 CG4798-PC 1..1881 17..1897 9405 100 Plus
l(2)k01209-RB 1881 CG4798-PB 1..1881 17..1897 9405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-RD 2284 CG4798-RD 311..2191 17..1897 9405 100 Plus
l(2)k01209-RC 2380 CG4798-RC 407..2287 17..1897 9405 100 Plus
l(2)k01209-RB 3254 CG4798-RB 1281..3161 17..1897 9405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17424818..17425416 1186..1784 2995 100 Plus
2R 25286936 2R 17424196..17424506 690..1000 1555 100 Plus
2R 25286936 2R 17423656..17423964 277..585 1545 100 Plus
2R 25286936 2R 17421687..17421946 17..276 1300 100 Plus
2R 25286936 2R 17424571..17424759 998..1186 945 100 Plus
2R 25286936 2R 17425468..17425586 1779..1897 595 100 Plus
2R 25286936 2R 17424026..17424134 583..691 545 100 Plus
Blast to na_te.dros performed 2014-11-27 15:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2491 20..234 337 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6948 39..240 279 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2583 13..251 244 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..7055 13..227 162 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1588 58..133 124 68.4 Plus
roo 9092 roo DM_ROO 9092bp 1096..1150 39..93 122 69.1 Plus
BS 5142 BS BS 5142bp 1977..2071 20..116 120 59.8 Plus

BS05054.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:30 Download gff for BS05054.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RD 1..1881 17..1897 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:35 Download gff for BS05054.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RD 652..2532 17..1897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:33 Download gff for BS05054.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..3159 17..1895 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:30 Download gff for BS05054.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RD 652..2532 17..1897 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:46 Download gff for BS05054.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RB 1281..3159 17..1895 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:46 Download gff for BS05054.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17421687..17421946 17..276 100 -> Plus
2R 17423656..17423963 277..584 100 -> Plus
2R 17424028..17424134 585..691 100 -> Plus
2R 17424198..17424505 692..999 100 -> Plus
2R 17424573..17424759 1000..1186 100 -> Plus
2R 17424819..17425412 1187..1780 100 -> Plus
2R 17425470..17425584 1781..1895 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:33 Download gff for BS05054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13309192..13309451 17..276 100 -> Plus
arm_2R 13311161..13311468 277..584 100 -> Plus
arm_2R 13311533..13311639 585..691 100 -> Plus
arm_2R 13311703..13312010 692..999 100 -> Plus
arm_2R 13312078..13312264 1000..1186 100 -> Plus
arm_2R 13312324..13312917 1187..1780 100 -> Plus
arm_2R 13312975..13313089 1781..1895 100   Plus

BS05054.pep Sequence

Translation from 16 to 1896

> BS05054.pep
MSSITFLCSKSGHNTNNNSINSSNNDVPKGAKANSAFAAASAGLLTIANH
QQQQLLQQPHQQQQQQQQQHHQQSKVKAIAAKTNGHIDDRSLSDVTEQLY
VDPYADLSNGLPGDLNCCPASPTTVPAKASLDSPLKRSGRRQRTTSIGNQ
TTTANPSECIIRANNRTIYTAGRPPWYNCAGQQVEPFVIGICGGSASGKT
TVAEKIIESLDVPWVTLLSMDCFYKILNEKQHEQALINEYNFDHPDAFDI
ELLLDVLTKLKEGRKVEVPVYNFVTHGRESQTKTMYGANVIIFEGILTFH
SPEVLKLLDMKIFVDTDPDIRLARRLRRDISQRGRDLKGVLKQYLNMVKP
SYCNYIAPTMAHADIIVPRGGDNKVAIHLIVQHVHTQLQLRGFKLRETLA
NSYKDQPMPHSLHLLHPTPQIKGLHTFIRCRNTSRDEFIFYSKRLIRLVI
EYALSLFPFKKTTVETPQGVLYEGKRMESRKICGVSILRAGETMEQAVCD
VCKDIRIGKILIQTNLKTGEPELYYLRLPKDIKDYKVILMDATVATGAAA
MMAIRVLLDHDVPEDNIILASLLMAEIGVHSIAYAFPKVKIVTSALDPEI
NSKFYVIPGIGNFGDRYFGTEPSDEY*

BS05054.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-PD 626 CG4798-PD 1..626 1..626 3254 100 Plus
l(2)k01209-PC 626 CG4798-PC 1..626 1..626 3254 100 Plus
l(2)k01209-PB 626 CG4798-PB 1..626 1..626 3254 100 Plus
l(2)k01209-PA 561 CG4798-PA 7..561 72..626 2810 97.5 Plus
CG6364-PB 305 CG6364-PB 27..240 186..391 492 46.7 Plus