Clone BS05056 Report

Search the DGRC for BS05056

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:56
Vector:pDNR-Dual
Associated Gene/Transcript5-HT7-RA
Protein status:BS05056.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05056.3prime Sequence

896 bp (817 high quality bases) assembled on 2005-12-02

> BS05056.3prime
ATGGTCTAGAAAGCTTCTAGAGAAAGCTCTCCCTCGCCCCGTGCCTCTCA
TCGCCCAGCATCACCCGCTGCGAGGGAGGCTCGCCATACTGATCCTGGTA
GTAGTTCTCCCGCATCATGGTGTTCAGGCTGGAGCAGCGGAAGTAGAGGA
TCTCCTGGAAGGGTTTGCGGAAATCCCTGTTCAGAGTGGCGTAGATAATA
GGGTTCAGCAGGGAGTTGGCATAGCCCAGCCAGAGGAATAGAGACGAGAG
CGATGCCGGTACGTGCATTGTCTCGAAAGGACGAATTAGGGCCAGGATAA
AGAATGGCAGCCAGCAGACGGTAAAGGCCGACATGATGATGCCCAGAGTG
GTGGAGGCCTTCTTCTCTTTGGCCAGTTGAAACCGCAGCTTCTTGTGGTG
CGGAGAGCCCAGGAGTCCGGTCGAACCACTAACGCCACCCCCACTGCCGT
GCCCAGCCAGTGCGCCTCCTCCGCTGCTCAGACCCCCACAGGTGGAGTAG
GTGAGCGAAGTGTTGCCCACGCTGCTGTGCCTCTGGCCATTTCCCGAGCT
GGCCAGCTCCGTGTGGCCCAAGGGCGGAGCCTGCGGGGCCGATGGCGATC
CTGTGCCATTGAGCGCCTGTTGCAAATGCGTCTGGGCGCGTTTCTCTTCC
AGGACAATCCGCCTCGCCGCCCTGAAGATCTGGTAGTACACAAACAGCAT
CACCGAGAGTGGTATGTAAAATGAGCCCAGGGTGGCGTAGATCTGATATG
CGAAGTTCTGGCACACCGTGCAGATAGGCTGGCCCTCCTCGTCCTCGTGC
TCGTTGCCCAGGATCAGCAGAGGAGGCAATGAGATGCAGGCGGCGGCCAG
CCAGACGATGCCCACGCACAGCATCATTCGCCGAGGAGTCCTCTTC

BS05056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12073-PA 1695 5-HT7-RA 816..1695 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 4486 CG12073-RB 1959..2838 896..17 4400 100 Minus
5-HT7-RA 3506 CG12073-RA 1885..2764 896..17 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30969884..30970763 17..896 4400 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:03:08 has no hits.

BS05056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:45 Download gff for BS05056.3prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-PA 816..1695 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:25:59 Download gff for BS05056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12073-PA 816..1695 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:14:06 Download gff for BS05056.3prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1885..2770 9..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:56:46 Download gff for BS05056.3prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1885..2770 9..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:56:46 Download gff for BS05056.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30969878..30970763 9..896 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:14:06 Download gff for BS05056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26795600..26796485 9..896 99   Plus

BS05056.5prime Sequence

883 bp (810 high quality bases) assembled on 2005-11-29

> BS05056.5prime
GAAGTTATCAGTCGACATGGCTTTATCTGGACAGGACTGGCGGCGCCATC
AGAGCCACCGCCAGCACAGAAACCACAGAACCCAGGGAAACCACCAGAAA
CTGATCTCCACCGCCACGCTGACTCTGTTCGTGCTCTTTCTGAGCAGCTG
GATAGCCTATGCGGCGGGCAAGGCCACCGTTCCCGCTCCGCTCGTGGAAG
GCGAGACGGAGTCGGCCACTTCGCAGGACTTTAATAGCAGTAGCGCCTTC
CTGGGGGCCATAGCCTCGGCCTCATCGACGGGATCGGGATCGGGCTCGGG
CTCGGGCTCGGGATCGGGATCGGGATCAGGATCCTATGGCCTGGCCTCGA
TGAACAGCAGCCCCATTGCCATAGTCTCGTATCAAGGCATCACCAGCAGC
AATTTGGGCGACAGCAATACGACTTTGGTGCCGCTATCGGACACTCCTTT
GCTCCTGGAGGAATTTGCAGCCGGCGAGTTTGTACTGCCCCCGTTGACGT
CCATATTCGTGAGCATCGTCCTTCTCATCGTGATCCTAGGCACTGTAGTG
GGCAATGTCCTGGTCTGCATAGCCGTTTGCATGGTGCGGAAATTGAGGAG
ACCCTGCAATTACCTTTTGGTGTCCTTGGCTCTTTCGGATCTCTGTGTGG
CTCTTCTGGTGATGCCCATGGCCTTGCTTTATGAAGTGCTGGAGAAGTGG
AACTTTGGACCGCTGCTCTGCGACATCTGGGTGTCCTTCGATGTGCTGTG
CTGCACGGCCTCGATCCTGAATCTGTGTGCCATATCCGTGGATCGATACC
TGGCCATCACGAAGCCCCTGGAGTACGGCGTGAAGAGGACTCCTCGGCGA
ATGATGCTGTGCGTGGGCATCGTCTGGCTGGCC

BS05056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12073-PA 1695 5-HT7-RA 1..867 17..883 4335 100 Plus
CG3856-PB 1914 Oamb-RB 310..344 752..786 150 97.1 Plus
CG3856-PA 1938 Oamb-RA 310..344 752..786 150 97.1 Plus
CG3856-PC 1938 Oamb-RC 310..344 752..786 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 4486 CG12073-RB 1144..2010 17..883 4335 100 Plus
5-HT7-RA 3506 CG12073-RA 1070..1936 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30970712..30971578 883..17 4335 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:57:55 has no hits.

BS05056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:46 Download gff for BS05056.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:00 Download gff for BS05056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12073-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:55 Download gff for BS05056.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..1936 17..883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:06 Download gff for BS05056.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..1936 17..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:06 Download gff for BS05056.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30970712..30971578 17..883 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:55 Download gff for BS05056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26796434..26797300 17..883 100   Minus

BS05056.complete Sequence

1727 bp (1727 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635053

> BS05056.complete
GAAGTTATCAGTCGACATGGCTTTATCTGGACAGGACTGGCGGCGCCATC
AGAGCCACCGCCAGCACAGAAACCACAGAACCCAGGGAAACCACCAGAAA
CTGATCTCCACCGCCACGCTGACTCTGTTCGTGCTCTTTCTGAGCAGCTG
GATAGCCTATGCGGCGGGCAAGGCCACCGTTCCCGCTCCGCTCGTGGAAG
GCGAGACGGAGTCGGCCACTTCGCAGGACTTTAATAGCAGTAGCGCCTTC
CTGGGGGCCATAGCCTCGGCCTCATCGACGGGATCGGGATCGGGCTCGGG
CTCGGGCTCGGGATCGGGATCGGGATCAGGATCCTATGGCCTGGCCTCGA
TGAACAGCAGCCCCATTGCCATAGTCTCGTATCAAGGCATCACCAGCAGC
AATTTGGGCGACAGCAATACGACTTTGGTGCCGCTATCGGACACTCCTTT
GCTCCTGGAGGAATTTGCAGCCGGCGAGTTTGTACTGCCCCCGTTGACGT
CCATATTCGTGAGCATCGTCCTTCTCATCGTGATCCTAGGCACTGTAGTG
GGCAATGTCCTGGTCTGCATAGCCGTTTGCATGGTGCGGAAATTGAGGAG
ACCCTGCAATTACCTTTTGGTGTCCTTGGCTCTTTCGGATCTCTGTGTGG
CTCTTCTGGTGATGCCCATGGCCTTGCTTTATGAAGTGCTGGAGAAGTGG
AACTTTGGACCGCTGCTCTGCGACATCTGGGTGTCCTTCGATGTGCTGTG
CTGCACGGCCTCGATCCTGAATCTGTGTGCCATATCCGTGGATCGATACC
TGGCCATCACGAAGCCCCTGGAGTACGGCGTGAAGAGGACTCCTCGGCGA
ATGATGCTGTGCGTGGGCATCGTCTGGCTGGCCGCCGCCTGCATCTCATT
GCCTCCTCTGCTGATCCTGGGCAACGAGCACGAGGACGAGGAGGGCCAGC
CTATCTGCACGGTGTGCCAGAACTTCGCATATCAGATCTACGCCACCCTG
GGCTCATTTTACATACCACTCTCGGTGATGCTGTTTGTGTACTACCAGAT
CTTCAGGGCGGCGAGGCGGATTGTCCTGGAAGAGAAACGCGCCCAGACGC
ATTTGCAACAGGCGCTCAATGGCACAGGATCGCCATCGGCCCCGCAGGCT
CCGCCCTTGGGCCACACGGAGCTGGCCAGCTCGGGAAATGGCCAGAGGCA
CAGCAGCGTGGGCAACACTTCGCTCACCTACTCCACCTGTGGGGGTCTGA
GCAGCGGAGGAGGCGCACTGGCTGGGCACGGCAGTGGGGGTGGCGTTAGT
GGTTCGACCGGACTCCTGGGCTCTCCGCACCACAAGAAGCTGCGGTTTCA
ACTGGCCAAAGAGAAGAAGGCCTCCACCACTCTGGGCATCATCATGTCGG
CCTTTACCGTCTGCTGGCTGCCATTCTTTATCCTGGCCCTAATTCGTCCT
TTCGAGACAATGCACGTACCGGCATCGCTCTCGTCTCTATTCCTCTGGCT
GGGCTATGCCAACTCCCTGCTGAACCCTATTATCTACGCCACTCTGAACA
GGGATTTCCGCAAACCCTTCCAGGAGATCCTCTACTTCCGCTGCTCCAGC
CTGAACACCATGATGCGGGAGAACTACTACCAGGATCAGTATGGCGAGCC
TCCCTCGCAGCGGGTGATGCTGGGCGATGAGAGGCACGGGGCGAGGGAGA
GCTTTCTCTAGAAGCTTTCTAGACCAT

BS05056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 1695 CG12073-PB 1..1695 17..1711 8475 100 Plus
5-HT7-RA 1695 CG12073-PA 1..1695 17..1711 8475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 4486 CG12073-RB 1144..2838 17..1711 8475 100 Plus
5-HT7-RA 3506 CG12073-RA 1070..2764 17..1711 8475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30969884..30971578 1711..17 8475 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:46:38 has no hits.

BS05056.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:09 Download gff for BS05056.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1..1695 17..1711 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:33 Download gff for BS05056.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1042..2742 17..1719 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:32 Download gff for BS05056.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..2764 17..1711 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:10 Download gff for BS05056.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1042..2742 17..1719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:25 Download gff for BS05056.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..2764 17..1711 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:25 Download gff for BS05056.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30969884..30971578 17..1711 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:32 Download gff for BS05056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26795606..26797300 17..1711 100   Minus

BS05056.pep Sequence

Translation from 16 to 1710

> BS05056.pep
MALSGQDWRRHQSHRQHRNHRTQGNHQKLISTATLTLFVLFLSSWIAYAA
GKATVPAPLVEGETESATSQDFNSSSAFLGAIASASSTGSGSGSGSGSGS
GSGSGSYGLASMNSSPIAIVSYQGITSSNLGDSNTTLVPLSDTPLLLEEF
AAGEFVLPPLTSIFVSIVLLIVILGTVVGNVLVCIAVCMVRKLRRPCNYL
LVSLALSDLCVALLVMPMALLYEVLEKWNFGPLLCDIWVSFDVLCCTASI
LNLCAISVDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLLI
LGNEHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQIFRAAR
RIVLEEKRAQTHLQQALNGTGSPSAPQAPPLGHTELASSGNGQRHSSVGN
TSLTYSTCGGLSSGGGALAGHGSGGGVSGSTGLLGSPHHKKLRFQLAKEK
KASTTLGIIMSAFTVCWLPFFILALIRPFETMHVPASLSSLFLWLGYANS
LLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQDQYGEPPSQRV
MLGDERHGARESFL*

BS05056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-PB 564 CG12073-PB 1..564 1..564 2915 100 Plus
5-HT7-PA 564 CG12073-PA 1..564 1..564 2915 100 Plus
Dop1R2-PA 537 CG18741-PA 115..493 169..526 566 37.1 Plus
Dop1R2-PB 539 CG18741-PB 115..493 169..526 566 37.1 Plus
Dop1R2-PC 807 CG18741-PC 115..493 169..526 566 37.1 Plus