Clone BS05057 Report

Search the DGRC for BS05057

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptClC-c-RB
Protein status:BS05057.pep: full length peptide match
Sequenced Size:2501

Clone Sequence Records

BS05057.complete Sequence

2501 bp assembled on 2009-12-07

GenBank Submission: KX797827

> BS05057.complete
GAAGTTATCAGTCGACATGATTGACATCACACCCCGCTCCAGTCCAGGCG
ATGTGATCGGCGGCGGCGGAGGAGGAGGAAGCAGCAGTGGCTATCACCGG
GAAACGGCCACCGAATCGGACACCGAACGAGATTTCGGACACTCTGGCGG
CAACGGCGGCGGCAATCACCACAATCAGCGGACAATGCACCAGCATGTGC
CAACTCACAGTGCCTTCGGCGATCCTATGGACGGAGCACTATCCTTCTAT
GGTTCCTCGGACGTGCAAGATGATATTCCTGGCATTGGGCAGTACGAAGA
TTTTCACACCATTGATTGGCAGCGGGACATTGCCCGTGATCGGATGCGAC
ATCGCTACATAGTCAAGAAGCGACAGGACTCCTTGTGGGATCTGATAAAG
GGTTCCATTGATGCCGGATCTGGCTGGCTATGTGTTTTACTCGTCGGAAT
TGCCGCAGGCTGTGTGGCGGGCATGGTGGACATTGGAGCTAGTTGGATGT
CGGATCTAAAGCATGGCATTTGTCCACCCGCCTTTTGGTTTAACAGGGAA
CAATGCTGCTATCCGGCCAAACAGTCAGTATTTGAAGAAGGCAACTGCTC
GACGTGGAAAACCTGGCCAGAGATCTTTGGTTTGGATCGAAATGGCACCG
GACCATATATCGTCGCTTACATCTGGTATGTGCTGTGGGCTTTGCTTTTT
GCTTCGCTCAGCGCCTCCCTTGTGCGAATGTTTGCGCCCTACGCCTGCGG
ATCTGGTATTCCCGAGATAAAGACCATCTTGTCTGGCTTCATTATACGCG
GCTATCTAGGAAAGTGGACGCTGCTGATCAAATCGGTGGGTCTGATGCTG
TCTGTATCCGCTGGCCTCACTTTGGGCAAGGAAGGACCCATGGTCCACAT
TGCCAGTTGTATTGGAAACATATTCTCACATGTTTTCCCAAAATATGGTC
GAAATGAGGCCAAGAAGCGTGAGATTCTTTCGGCAGCAGCAGCGGCAGGC
GTCTCGGTGGCCTTCGGAGCACCAATCGGTGGAGTTCTCTTTTCGCTGGA
GGAAGTGTCATACTATTTTCCATTGAAGACATTGTGGCGTTCATTCTTTT
GTGCATTGATTGCCGCATTCGTTTTACGATCACTGACGCCGTTTGGCAAC
GAGCATTCCGTGCTCTTTTTCGTGGAGTATAACAAGCCCTGGATCTTTTT
CGAACTTATTCCTTTTGTTTTCCTCGGAATTATGGGGGGTGTTATTGGCA
CATTCTTCATCAAGGCCAATTTGTGGTGGTGCCGCTACAGGAAGTTCAGC
AAGCTCGGACAGTATCCAGTAATGGAAGTGCTCTTCGTTACCCTGGTCAC
TGCCATCATTTGCTACCCCAATCCATTTACCCGAATGAACATGAACGAGC
TAATATTCCTATTGGTTAGCAAGTGCTCACCCGGAGATGTCACCAATCCG
TTATGTGATTACAAGCGCATGAACATCACGTCGGGCAACAGTTTCATTGA
AGTTACGGAGCCAGGTCCTGGTGTGTACAGCTCCATTTGGCTGCTTATGC
TCACCTTTATACTTAAACTGGCCCTGACCATCTTCACGTTTGGCATGAAA
GTGCCCGCTGGTCTGTTTATTCCGTCCCTGCTCCTTGGCGCCATCATGGG
TCGCATTGTTGGAATCGGTGTGGAGCAGTTTGCCTACAGCTATCCCAATA
TTTGGTTCTTTACCGGTGAGTGTGCGGACAGCAATCTTATCACACCCGGA
CTGTATGCGGTTGTGGGAGCAGCAGCTGTGCTGGGAGGTGTCACTCGAAT
GACCGTCTCCCTGGTAGTGATAATGTTCGAGCTAACAGGCGGAGTGCGGT
ATATTGTGCCCCTGATGGCTGCCGCCATGGCCTCCAAGTGGGTGGGTGAT
GCTCTGGGCAGGCAAGGTATCTACGATGCGCACATTGCGCTGAATGGTTA
TCCGTTCCTAGACAGCAAAGAAGAGTTTGCGCATACAACACTGGCCGCAG
ATGTGATGCAACCAAAGCGGAATGAAACTTTGAATGTCATTACCCAAGAC
TCCATGACGGTGGACGATGTTGAGAACCTTCTTAAAGAAACGGAACACAA
TGGCTATCCGGTGGTGGTGTCGCGGGAGAATCAATATTTAGTGGGCTTTG
TATTGCGCAGGGATCTTAACTTGGCCATAGGCAATGCCAAGCGTCTAATC
GAGGGCATTAGCAGCAGCTCCATAGTATTATTCACATCATCCCAGCCTAT
TCAAAATCTGGGACCCCAGCCGCTGAAGCTGAAAAAGATCCTGGATATGG
CACCGATCACAGTTACAGATCAAACGCCAATGGAGACGGTAGTGGACATG
TTCCGAAAGCTGGGACTGCGCCAAACATTGGTAACACACAACGGTCGCCT
ACTGGGCGTAATTACAAAGAAAGATGTGCTGCGCCATGTGAAGCAGATGG
ATAACGAAGATCCCAATACGGTGCTCTTCAACTGAAAGCTTTCTAGACCA
T

BS05057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-RD 2682 CG5284-PD 214..2682 17..2485 12345 100 Plus
ClC-c-RC 2682 CG5284-PC 214..2682 17..2485 12345 100 Plus
ClC-c-RB 2469 CG5284-PB 1..2469 17..2485 12345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-RD 3962 CG5284-RD 592..3061 17..2486 12350 100 Plus
ClC-c-RC 3718 CG5284-RC 592..3061 17..2486 12350 100 Plus
ClC-c-RB 3319 CG5284-RB 193..2662 17..2486 12350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16093015..16093649 604..1238 3175 100 Plus
3L 28110227 3L 16093987..16094549 1455..2017 2815 100 Plus
3L 28110227 3L 16093704..16093922 1237..1455 1095 100 Plus
3L 28110227 3L 16091642..16091859 17..234 1090 100 Plus
3L 28110227 3L 16094825..16095042 2177..2394 1090 100 Plus
3L 28110227 3L 16092751..16092959 396..604 1045 100 Plus
3L 28110227 3L 16092531..16092699 233..401 845 100 Plus
3L 28110227 3L 16094607..16094771 2017..2181 825 100 Plus
3L 28110227 3L 16095105..16095197 2394..2486 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:23:41 has no hits.

BS05057.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:14 Download gff for BS05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG5284-RB 193..2660 17..2484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:10 Download gff for BS05057.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 193..2660 17..2484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:12 Download gff for BS05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG5284-RB 193..2660 17..2484 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:28 Download gff for BS05057.complete
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 193..2660 17..2484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:28 Download gff for BS05057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16091642..16091858 17..233 100 -> Plus
3L 16092532..16092698 234..400 100 -> Plus
3L 16092756..16092959 401..604 100 -> Plus
3L 16093016..16093648 605..1237 100 -> Plus
3L 16093705..16093922 1238..1455 100 -> Plus
3L 16093988..16094548 1456..2016 100 -> Plus
3L 16094607..16094770 2017..2180 100 -> Plus
3L 16094829..16095042 2181..2394 100 -> Plus
3L 16095106..16095195 2395..2484 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:10 Download gff for BS05057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16084742..16084958 17..233 100 -> Plus
arm_3L 16085632..16085798 234..400 100 -> Plus
arm_3L 16085856..16086059 401..604 100 -> Plus
arm_3L 16086116..16086748 605..1237 100 -> Plus
arm_3L 16086805..16087022 1238..1455 100 -> Plus
arm_3L 16087088..16087648 1456..2016 100 -> Plus
arm_3L 16087707..16087870 2017..2180 100 -> Plus
arm_3L 16087929..16088142 2181..2394 100 -> Plus
arm_3L 16088206..16088295 2395..2484 100   Plus

BS05057.3prime Sequence

870 bp (802 high quality bases) assembled on 2005-12-02

> BS05057.3prime
ATGGTCTAGAAAGCTTTCAGTTGAAGAGCACCGTATTGGGATCTTCGTTA
TCCATCTGCTTCACATGGCGCAGCACATCTTTCTTTGTAATTACGCCCAG
TAGGCGACCGTTGTGTGTTACCAATGTTTGGCGCAGTCCCAGCTTTCGGA
ACATGTCCACTACCGTCTCCATTGGCGTTTGATCTGTAACTGTGATCGGT
GCCATATCCAGGATCTTTTTCAGCTTCAGCGGCTGGGGTCCCAGATTTTG
AATAGGCTGGGATGATGTGAATAATACTATGGAGCTGCTGCTAATGCCCT
CGATTAGACGCTTGGCATTGCCTATGGCCAAGTTAAGATCCCTGCGCAAT
ACAAAGCCCACTAAATATTGATTCTCCCGCGACACCACCACCGGATAGCC
ATTGTGTTCCGTTTCTTTAAGAAGGTTCTCAACATCGTCCACCGTCATGG
AGTCTTGGGTAATGACATTCAAAGTTTCATTCCGCTTTGGTTGCATCACA
TCTGCGGCCAGTGTTGTATGCGCAAACTCTTCTTTGCTGTCTAGGAACGG
ATAACCATTCAGCGCAATGTGCGCATCGTAGATACCTTGCCTGCCCAGAG
CATCACCCACCCACTTGGAGGCCATGGCGGCAGCCATCAGGGGCACAATA
TACCGCACTCCGCCTGTTAGCTCGAACATTATCACTACCAGGGAGACGGT
CATTCGAGTGACACCTCCCAGCACAGCTGCTGCTCCCACAACCGCATACA
GTCCGGGTGTGATAAGATTGCTGTCCGCACACTCACCGGTAAAGAACCAA
ATATTGGGATAGCTGTAGGCAAACTGCTCCACACCGATTCCAACAATGCG
ACCCATGATGGCGCCAAGGA

BS05057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5284-PB 2469 CG5284-RB 1616..2469 870..17 4270 100 Minus
CG5284-PA 2580 CG5284-RA 1912..2580 685..17 3345 100 Minus
CG5284-PA 2580 CG5284-RA 1829..1912 870..787 420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-RD 3962 CG5284-RD 2207..3061 870..16 4275 100 Minus
ClC-c-RC 3718 CG5284-RC 2207..3061 870..16 4275 100 Minus
ClC-c-RB 3319 CG5284-RB 1808..2662 870..16 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16094164..16094549 870..485 1930 100 Minus
3L 28110227 3L 16094825..16095042 325..108 1090 100 Minus
3L 28110227 3L 16094607..16094771 485..321 825 100 Minus
3L 28110227 3L 16095105..16095197 108..16 465 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:05:38 has no hits.

BS05057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:47 Download gff for BS05057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5284-PB 1617..2469 17..869 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:01 Download gff for BS05057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5284-PB 1617..2469 17..869 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:14:33 Download gff for BS05057.3prime
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 1809..2665 10..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:57:05 Download gff for BS05057.3prime
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 1809..2665 10..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:57:05 Download gff for BS05057.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16094165..16094548 486..869 100 -> Minus
3L 16094607..16094770 322..485 100 -> Minus
3L 16094829..16095042 108..321 100 -> Minus
3L 16095106..16095200 10..107 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:14:33 Download gff for BS05057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16087265..16087648 486..869 100 -> Minus
arm_3L 16087707..16087870 322..485 100 -> Minus
arm_3L 16087929..16088142 108..321 100 -> Minus
arm_3L 16088206..16088300 10..107 96   Minus

BS05057.5prime Sequence

942 bp (834 high quality bases) assembled on 2005-12-02

> BS05057.5prime
GAAGTTATCAGTCGACATGATTGACATCACACCCCGCTCCAGTCCAGGCG
ATGTGATCGGCGGCGGCGGAGGAGGAGGAAGCAGCAGTGGCTATCACCGG
GAAACGGCCACCGAATCGGACACCGAACGAGATTTCGGACACTCTGGCGG
CAACGGCGGCGGCAATCACCACAATCAGCGGACAATGCACCAGCATGTGC
CAACTCACAGTGCCTTCGGCGATCCTATGGACGGAGCACTATCCTTCTAT
GGTTCCTCGGACGTGCAAGATGATATTCCTGGCATTGGGCAGTACGAAGA
TTTTCACACCATTGATTGGCAGCGGGACATTGCCCGTGATCGGATGCGAC
ATCGCTACATAGTCAAGAAGCGACAGGACTCCTTGTGGGATCTGATAAAG
GGTTCCATTGATGCCGGATCTGGCTGGCTATGTGTTTTACTCGTCGGAAT
TGCCGCAGGCTGTGTGGCGGGCATGGTGGACATTGGAGCTAGTTGGATGT
CGGATCTAAAGCATGGCATTTGTCCACCCGCCTTTTGGTTTAACAGGGAA
CAATGCTGCTATCCGGCCAAACAGTCAGTATTTGAAGAAGGCAACTGCTC
GACGTGGAAAACCTGGCCAGAGATCTTTGGTTTGGATCGAAATGGCACCG
GACCATATATCGTCGCTTACATCTGGTATGTGCTGTGGGCTTTGCTTTTT
GCTTCGCTCAGCGCCTCCCTTGTGCGAATGTTTGCGCCCTACGCCTGCGG
ATCTGGTATTCCCGAGATAAAGACCATCTTGTCTGGCTTCATTATACGCG
GCTATCTAGGAAAGTGGACGCTGCTGATCAAATCGGTGGGTCTGATGCTG
TCTGTATCCGCTGGCCTCACTTTGGGCAAGGAAGGACCCATGGTCCACAT
TGCCAGTTGGAATTGGAAACATATTCTCACATGGTTTCCCCA

BS05057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5284-PA 2580 CG5284-RA 214..1106 17..909 4465 100 Plus
CG5284-PB 2469 CG5284-RB 1..893 17..909 4465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-RD 3962 CG5284-RD 592..1514 17..940 4565 99.7 Plus
ClC-c-RC 3718 CG5284-RC 592..1514 17..940 4565 99.7 Plus
ClC-c-RB 3319 CG5284-RB 193..1115 17..940 4565 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16093015..16093350 604..940 1605 99.1 Plus
3L 28110227 3L 16091642..16091859 17..234 1090 100 Plus
3L 28110227 3L 16092751..16092959 396..604 1045 100 Plus
3L 28110227 3L 16092531..16092699 233..401 845 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:53:12 has no hits.

BS05057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:48 Download gff for BS05057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5284-PB 1..923 17..941 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:03 Download gff for BS05057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5284-PB 1..923 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:42:50 Download gff for BS05057.5prime
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 188..1115 10..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:27 Download gff for BS05057.5prime
Subject Subject Range Query Range Percent Splice Strand
ClC-c-RB 188..1115 10..941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:27 Download gff for BS05057.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16091637..16091858 10..233 98 -> Plus
3L 16092532..16092698 234..400 100 -> Plus
3L 16093016..16093350 605..941 98   Plus
3L 16092756..16092959 401..604 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:42:50 Download gff for BS05057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16084737..16084958 10..233 98 -> Plus
arm_3L 16085632..16085798 234..400 100 -> Plus
arm_3L 16085856..16086059 401..604 100 -> Plus
arm_3L 16086116..16086450 605..941 98   Plus

BS05057.pep Sequence

Translation from 16 to 2484

> BS05057.pep
MIDITPRSSPGDVIGGGGGGGSSSGYHRETATESDTERDFGHSGGNGGGN
HHNQRTMHQHVPTHSAFGDPMDGALSFYGSSDVQDDIPGIGQYEDFHTID
WQRDIARDRMRHRYIVKKRQDSLWDLIKGSIDAGSGWLCVLLVGIAAGCV
AGMVDIGASWMSDLKHGICPPAFWFNREQCCYPAKQSVFEEGNCSTWKTW
PEIFGLDRNGTGPYIVAYIWYVLWALLFASLSASLVRMFAPYACGSGIPE
IKTILSGFIIRGYLGKWTLLIKSVGLMLSVSAGLTLGKEGPMVHIASCIG
NIFSHVFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYY
FPLKTLWRSFFCALIAAFVLRSLTPFGNEHSVLFFVEYNKPWIFFELIPF
VFLGIMGGVIGTFFIKANLWWCRYRKFSKLGQYPVMEVLFVTLVTAIICY
PNPFTRMNMNELIFLLVSKCSPGDVTNPLCDYKRMNITSGNSFIEVTEPG
PGVYSSIWLLMLTFILKLALTIFTFGMKVPAGLFIPSLLLGAIMGRIVGI
GVEQFAYSYPNIWFFTGECADSNLITPGLYAVVGAAAVLGGVTRMTVSLV
VIMFELTGGVRYIVPLMAAAMASKWVGDALGRQGIYDAHIALNGYPFLDS
KEEFAHTTLAADVMQPKRNETLNVITQDSMTVDDVENLLKETEHNGYPVV
VSRENQYLVGFVLRRDLNLAIGNAKRLIEGISSSSIVLFTSSQPIQNLGP
QPLKLKKILDMAPITVTDQTPMETVVDMFRKLGLRQTLVTHNGRLLGVIT
KKDVLRHVKQMDNEDPNTVLFN*

BS05057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
ClC-c-PD 893 CG5284-PD 72..893 1..822 4339 100 Plus
ClC-c-PC 893 CG5284-PC 72..893 1..822 4339 100 Plus
ClC-c-PB 822 CG5284-PB 1..822 1..822 4339 100 Plus
ClC-b-PA 813 CG8594-PA 128..811 103..805 601 27.8 Plus
ClC-a-PG 1018 CG31116-PG 28..678 42..727 534 28.1 Plus