Clone BS05060 Report

Search the DGRC for BS05060

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptsqd-RA
Protein status:BS05060.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05060.3prime Sequence

946 bp (822 high quality bases) assembled on 2005-12-02

> BS05060.3prime
ATGGTCTAGAAAGCTTTTAGAACTGCTGATAGTTGTTGCTATTGTTCTTG
TTTTGATGGTAATTACTCGACGTGTTGTTATTGTAATAATTGTTTTGAGC
ACTACTTTGTTGTTTGTTGTATTTACCATAACCGTAGTCATATCCATTAT
AGTAGCCGCCGGCATAGTAGTCGCCATAACCACCGGCACCATATCCGCCG
TAGCCGCCGCCATAGCCGCCGTATGATCCCTGTCCGTCCCACTGGTTGTT
GTAGCCACCTCGTCCTCCGTAGCCACCGCGTCCGCCGCGCATACCACCGC
GTGGTCCACCACGCATACCGCCCATCATCTGGTTCTCCGGCTTGGGCGTC
GCACGCTTAACATCGACCTCCTTGCCGGCGATCTTCTGCTTGGGCGTCTT
CAGCAAATCTGTCACCACCTGCTCCGAATCGAAGGTGATGAAGCAGAATC
CTTTGCGCTGCGACTTTTGCTTGTCGAATGGCATCTCCACCTCGACGATA
TTGCCGAACTGTCCAAAGTAGGTCTTAATCTCCTCATCGCTGATCTCTGT
GGTGAGGCCGCCGACAAAGATCTTGCCGTGCCTGGCCTTGGCCTTCTTGG
GATCGACCTTCTTGCTGTTGATTATGTGCTCATCCGCGGCGCTGACTTTG
TCAATGGCCTCGGTGTTTGTAAACACGATGAAGGCGAATCCTCGGGACCG
ACCGGTCTGGGGATCTGTCTTGACATTGATGCTCTCGATCTCGCCATATT
TGCCGAAGTGATCGCGGAGTTCCTTCTCAGTCGTTTCCCAGCTCAGACCA
CCGACAAACAGTTTCCTGTCGTCGTCCCGCTGGCCGGATGCGGCCGATTG
GTTGTCCGAACTGCCGTTGGTCGAGCCCGGCGCGCCCGCATCACCATTTT
CAGATCCCGGACCGTCGGCAGTCACGTCCTTGGTGAATCCTCGCCG

BS05060.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG16901-PA 966 sqd-RA 106..966 877..17 4305 100 Minus
CG16901-PC 927 sqd-RC 106..857 877..126 3760 100 Minus
CG16901-PB 1035 sqd-RB 106..856 877..127 3755 100 Minus
CG16901-PD 537 sqd-RD 1..358 484..127 1790 100 Minus
CG16901-PA 966 sqd-RA 46..101 937..882 280 100 Minus
CG16901-PC 927 sqd-RC 46..101 937..882 280 100 Minus
CG16901-PB 1035 sqd-RB 46..101 937..882 280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-RA 5551 CG16901-RA 150..1080 946..17 4585 99.7 Minus
sqd-RC 2239 CG16901-RC 146..967 946..126 4040 99.6 Minus
sqd-RE 2844 CG16901-RE 421..1242 946..126 4040 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13642829..13643103 500..774 1375 100 Plus
3R 32079331 3R 13642511..13642755 255..499 1225 100 Plus
3R 32079331 3R 13642189..13642428 17..256 1200 100 Plus
3R 32079331 3R 13645752..13645874 815..937 570 97.6 Plus
3R 32079331 3R 13643169..13643212 775..818 220 100 Plus
Blast to na_te.dros performed 2015-02-10 18:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 1654..1759 164..65 118 62.3 Minus

BS05060.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:54 Download gff for BS05060.3prime
Subject Subject Range Query Range Percent Splice Strand
sqd-PA 36..966 17..946 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:10 Download gff for BS05060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16901-PA 36..966 17..946 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:42:24 Download gff for BS05060.3prime
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 150..1080 17..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:31 Download gff for BS05060.3prime
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 150..1080 17..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:31 Download gff for BS05060.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13642189..13642427 17..255 100 <- Plus
3R 13642512..13642755 256..499 100 <- Plus
3R 13642829..13643103 500..774 100 <- Plus
3R 13643169..13643209 775..815 100 <- Plus
3R 13645753..13645884 816..946 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:42:24 Download gff for BS05060.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9467911..9468149 17..255 100 <- Plus
arm_3R 9468234..9468477 256..499 100 <- Plus
arm_3R 9468551..9468825 500..774 100 <- Plus
arm_3R 9468891..9468931 775..815 100 <- Plus
arm_3R 9471475..9471606 816..946 97   Plus

BS05060.5prime Sequence

907 bp (853 high quality bases) assembled on 2005-11-29

> BS05060.5prime
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAA
CAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACG
GCGGATATGGTGCCGGGTGGTTATGGCGACTACTATGCCGGCGGCTACTA
TAATGGATATGACTACGGTTATGGTAAATACAACAAAACAACAAGTAGTG
CTCAAAA

BS05060.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16901-PA 966 sqd-RA 1..800 17..816 4000 100 Plus
CG16901-PC 927 sqd-RC 1..800 17..816 4000 100 Plus
CG16901-PB 1035 sqd-RB 1..800 17..816 4000 100 Plus
CG16901-PD 537 sqd-RD 1..302 515..816 1510 100 Plus
CG16901-PA 966 sqd-RA 799..870 816..887 360 100 Plus
CG16901-PC 927 sqd-RC 799..857 816..874 295 100 Plus
CG16901-PB 1035 sqd-RB 799..856 816..873 290 100 Plus
CG16901-PD 537 sqd-RD 301..358 816..873 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-RA 5551 CG16901-RA 115..1004 17..907 4385 99.7 Plus
sqd-RC 2239 CG16901-RC 111..967 17..874 4265 99.9 Plus
sqd-RE 2844 CG16901-RE 386..1242 17..874 4265 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13642829..13643103 499..225 1375 100 Minus
3R 32079331 3R 13642511..13642755 744..500 1225 100 Minus
3R 32079331 3R 13645752..13645919 184..17 840 100 Minus
3R 32079331 3R 13642265..13642428 907..743 715 97 Minus
3R 32079331 3R 13643169..13643212 224..181 220 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:12:04 has no hits.

BS05060.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:55 Download gff for BS05060.5prime
Subject Subject Range Query Range Percent Splice Strand
sqd-PC 1..857 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:12 Download gff for BS05060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16901-PC 1..857 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:11 Download gff for BS05060.5prime
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 107..1000 9..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:29:52 Download gff for BS05060.5prime
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 107..1000 9..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:29:52 Download gff for BS05060.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13642269..13642427 744..903 98 <- Minus
3R 13642512..13642755 500..743 100 <- Minus
3R 13642829..13643103 225..499 100 <- Minus
3R 13643169..13643209 184..224 100 <- Minus
3R 13645753..13645925 9..183 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:11 Download gff for BS05060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9467991..9468149 744..903 98 <- Minus
arm_3R 9468234..9468477 500..743 100 <- Minus
arm_3R 9468551..9468825 225..499 100 <- Minus
arm_3R 9468891..9468931 184..224 100 <- Minus
arm_3R 9471475..9471647 9..183 97   Minus

BS05060.complete Sequence

998 bp (998 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635054

> BS05060.complete
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAA
CAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACG
GCGGATATGGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACTAT
AATGGATATGACTACGGTTATGGTAAATACAACAAACAACAAAGTAGTGC
TCAAAACAATTATTACAATAACAACACGTCGAGTAATTACCATCAAAACA
AGAACAATAGCAACAACTATCAGCAGTTCTAAAAGCTTTCTAGACCAT

BS05060.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-RA 966 CG16901-PA 1..966 17..982 4830 100 Plus
sqd-RC 927 CG16901-PC 1..857 17..873 4285 100 Plus
sqd-RE 927 CG16901-PE 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-RA 5551 CG16901-RA 115..1080 17..982 4830 100 Plus
sqd-RC 2239 CG16901-RC 111..967 17..873 4285 100 Plus
sqd-RE 2844 CG16901-RE 386..1242 17..873 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13642829..13643103 499..225 1375 100 Minus
3R 32079331 3R 13642511..13642755 744..500 1225 100 Minus
3R 32079331 3R 13642189..13642428 982..743 1200 100 Minus
3R 32079331 3R 13645752..13645919 184..17 840 100 Minus
3R 32079331 3R 13643169..13643212 224..181 220 100 Minus
Blast to na_te.dros performed 2014-11-27 13:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 1654..1759 835..934 118 62.3 Plus

BS05060.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:11 Download gff for BS05060.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 1..966 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:35 Download gff for BS05060.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 378..1351 9..982 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:09 Download gff for BS05060.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 115..1078 17..980 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:11 Download gff for BS05060.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 378..1351 9..982 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:18 Download gff for BS05060.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 115..1078 17..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:18 Download gff for BS05060.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13642191..13642427 744..980 100 <- Minus
3R 13642512..13642755 500..743 100 <- Minus
3R 13642829..13643103 225..499 100 <- Minus
3R 13643169..13643209 184..224 100 <- Minus
3R 13645753..13645919 17..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:09 Download gff for BS05060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9467913..9468149 744..980 100 <- Minus
arm_3R 9468234..9468477 500..743 100 <- Minus
arm_3R 9468551..9468825 225..499 100 <- Minus
arm_3R 9468891..9468931 184..224 100 <- Minus
arm_3R 9471475..9471641 17..183 100   Minus

BS05060.pep Sequence

Translation from 16 to 981

> BS05060.pep
MAENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASG
QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA
FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDE
EIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK
IAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDG
QGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYGKYNKQQSSAQNNYY
NNNTSSNYHQNKNNSNNYQQF*

BS05060.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-PA 321 CG16901-PA 1..321 1..321 1734 100 Plus
sqd-PC 308 CG16901-PC 1..286 1..286 1539 100 Plus
sqd-PE 308 CG16901-PE 1..286 1..286 1539 100 Plus
sqd-PB 344 CG16901-PB 1..299 1..299 1539 96.3 Plus
sqd-PD 178 CG16901-PD 1..133 167..299 682 91.7 Plus