Clone Sequence Records
BS05060.3prime Sequence
946 bp (822 high quality bases) assembled on 2005-12-02
> BS05060.3prime
ATGGTCTAGAAAGCTTTTAGAACTGCTGATAGTTGTTGCTATTGTTCTTG
TTTTGATGGTAATTACTCGACGTGTTGTTATTGTAATAATTGTTTTGAGC
ACTACTTTGTTGTTTGTTGTATTTACCATAACCGTAGTCATATCCATTAT
AGTAGCCGCCGGCATAGTAGTCGCCATAACCACCGGCACCATATCCGCCG
TAGCCGCCGCCATAGCCGCCGTATGATCCCTGTCCGTCCCACTGGTTGTT
GTAGCCACCTCGTCCTCCGTAGCCACCGCGTCCGCCGCGCATACCACCGC
GTGGTCCACCACGCATACCGCCCATCATCTGGTTCTCCGGCTTGGGCGTC
GCACGCTTAACATCGACCTCCTTGCCGGCGATCTTCTGCTTGGGCGTCTT
CAGCAAATCTGTCACCACCTGCTCCGAATCGAAGGTGATGAAGCAGAATC
CTTTGCGCTGCGACTTTTGCTTGTCGAATGGCATCTCCACCTCGACGATA
TTGCCGAACTGTCCAAAGTAGGTCTTAATCTCCTCATCGCTGATCTCTGT
GGTGAGGCCGCCGACAAAGATCTTGCCGTGCCTGGCCTTGGCCTTCTTGG
GATCGACCTTCTTGCTGTTGATTATGTGCTCATCCGCGGCGCTGACTTTG
TCAATGGCCTCGGTGTTTGTAAACACGATGAAGGCGAATCCTCGGGACCG
ACCGGTCTGGGGATCTGTCTTGACATTGATGCTCTCGATCTCGCCATATT
TGCCGAAGTGATCGCGGAGTTCCTTCTCAGTCGTTTCCCAGCTCAGACCA
CCGACAAACAGTTTCCTGTCGTCGTCCCGCTGGCCGGATGCGGCCGATTG
GTTGTCCGAACTGCCGTTGGTCGAGCCCGGCGCGCCCGCATCACCATTTT
CAGATCCCGGACCGTCGGCAGTCACGTCCTTGGTGAATCCTCGCCG
BS05060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16901-PA | 966 | sqd-RA | 106..966 | 877..17 | 4305 | 100 | Minus |
CG16901-PC | 927 | sqd-RC | 106..857 | 877..126 | 3760 | 100 | Minus |
CG16901-PB | 1035 | sqd-RB | 106..856 | 877..127 | 3755 | 100 | Minus |
CG16901-PD | 537 | sqd-RD | 1..358 | 484..127 | 1790 | 100 | Minus |
CG16901-PA | 966 | sqd-RA | 46..101 | 937..882 | 280 | 100 | Minus |
CG16901-PC | 927 | sqd-RC | 46..101 | 937..882 | 280 | 100 | Minus |
CG16901-PB | 1035 | sqd-RB | 46..101 | 937..882 | 280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RA | 5551 | CG16901-RA | 150..1080 | 946..17 | 4585 | 99.7 | Minus |
sqd-RC | 2239 | CG16901-RC | 146..967 | 946..126 | 4040 | 99.6 | Minus |
sqd-RE | 2844 | CG16901-RE | 421..1242 | 946..126 | 4040 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13642829..13643103 | 500..774 | 1375 | 100 | Plus |
3R | 32079331 | 3R | 13642511..13642755 | 255..499 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 13642189..13642428 | 17..256 | 1200 | 100 | Plus |
3R | 32079331 | 3R | 13645752..13645874 | 815..937 | 570 | 97.6 | Plus |
3R | 32079331 | 3R | 13643169..13643212 | 775..818 | 220 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fw2 | 3961 | Fw2 FW2 3961bp | 1654..1759 | 164..65 | 118 | 62.3 | Minus |
BS05060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:54 Download gff for
BS05060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-PA | 36..966 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:10 Download gff for
BS05060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16901-PA | 36..966 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:42:24 Download gff for
BS05060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 150..1080 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:31 Download gff for
BS05060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 150..1080 | 17..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:31 Download gff for
BS05060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13642189..13642427 | 17..255 | 100 | <- | Plus |
3R | 13642512..13642755 | 256..499 | 100 | <- | Plus |
3R | 13642829..13643103 | 500..774 | 100 | <- | Plus |
3R | 13643169..13643209 | 775..815 | 100 | <- | Plus |
3R | 13645753..13645884 | 816..946 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:42:24 Download gff for
BS05060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9467911..9468149 | 17..255 | 100 | <- | Plus |
arm_3R | 9468234..9468477 | 256..499 | 100 | <- | Plus |
arm_3R | 9468551..9468825 | 500..774 | 100 | <- | Plus |
arm_3R | 9468891..9468931 | 775..815 | 100 | <- | Plus |
arm_3R | 9471475..9471606 | 816..946 | 97 | | Plus |
BS05060.5prime Sequence
907 bp (853 high quality bases) assembled on 2005-11-29
> BS05060.5prime
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAA
CAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACG
GCGGATATGGTGCCGGGTGGTTATGGCGACTACTATGCCGGCGGCTACTA
TAATGGATATGACTACGGTTATGGTAAATACAACAAAACAACAAGTAGTG
CTCAAAA
BS05060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16901-PA | 966 | sqd-RA | 1..800 | 17..816 | 4000 | 100 | Plus |
CG16901-PC | 927 | sqd-RC | 1..800 | 17..816 | 4000 | 100 | Plus |
CG16901-PB | 1035 | sqd-RB | 1..800 | 17..816 | 4000 | 100 | Plus |
CG16901-PD | 537 | sqd-RD | 1..302 | 515..816 | 1510 | 100 | Plus |
CG16901-PA | 966 | sqd-RA | 799..870 | 816..887 | 360 | 100 | Plus |
CG16901-PC | 927 | sqd-RC | 799..857 | 816..874 | 295 | 100 | Plus |
CG16901-PB | 1035 | sqd-RB | 799..856 | 816..873 | 290 | 100 | Plus |
CG16901-PD | 537 | sqd-RD | 301..358 | 816..873 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RA | 5551 | CG16901-RA | 115..1004 | 17..907 | 4385 | 99.7 | Plus |
sqd-RC | 2239 | CG16901-RC | 111..967 | 17..874 | 4265 | 99.9 | Plus |
sqd-RE | 2844 | CG16901-RE | 386..1242 | 17..874 | 4265 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13642829..13643103 | 499..225 | 1375 | 100 | Minus |
3R | 32079331 | 3R | 13642511..13642755 | 744..500 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 13645752..13645919 | 184..17 | 840 | 100 | Minus |
3R | 32079331 | 3R | 13642265..13642428 | 907..743 | 715 | 97 | Minus |
3R | 32079331 | 3R | 13643169..13643212 | 224..181 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:12:04 has no hits.
BS05060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:55 Download gff for
BS05060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-PC | 1..857 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:12 Download gff for
BS05060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16901-PC | 1..857 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:11 Download gff for
BS05060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 107..1000 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:29:52 Download gff for
BS05060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 107..1000 | 9..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:29:52 Download gff for
BS05060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13642269..13642427 | 744..903 | 98 | <- | Minus |
3R | 13642512..13642755 | 500..743 | 100 | <- | Minus |
3R | 13642829..13643103 | 225..499 | 100 | <- | Minus |
3R | 13643169..13643209 | 184..224 | 100 | <- | Minus |
3R | 13645753..13645925 | 9..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:11 Download gff for
BS05060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9467991..9468149 | 744..903 | 98 | <- | Minus |
arm_3R | 9468234..9468477 | 500..743 | 100 | <- | Minus |
arm_3R | 9468551..9468825 | 225..499 | 100 | <- | Minus |
arm_3R | 9468891..9468931 | 184..224 | 100 | <- | Minus |
arm_3R | 9471475..9471647 | 9..183 | 97 | | Minus |
BS05060.complete Sequence
998 bp (998 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635054
> BS05060.complete
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAA
CAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACG
GCGGATATGGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACTAT
AATGGATATGACTACGGTTATGGTAAATACAACAAACAACAAAGTAGTGC
TCAAAACAATTATTACAATAACAACACGTCGAGTAATTACCATCAAAACA
AGAACAATAGCAACAACTATCAGCAGTTCTAAAAGCTTTCTAGACCAT
BS05060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RA | 966 | CG16901-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
sqd-RC | 927 | CG16901-PC | 1..857 | 17..873 | 4285 | 100 | Plus |
sqd-RE | 927 | CG16901-PE | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RA | 5551 | CG16901-RA | 115..1080 | 17..982 | 4830 | 100 | Plus |
sqd-RC | 2239 | CG16901-RC | 111..967 | 17..873 | 4285 | 100 | Plus |
sqd-RE | 2844 | CG16901-RE | 386..1242 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13642829..13643103 | 499..225 | 1375 | 100 | Minus |
3R | 32079331 | 3R | 13642511..13642755 | 744..500 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 13642189..13642428 | 982..743 | 1200 | 100 | Minus |
3R | 32079331 | 3R | 13645752..13645919 | 184..17 | 840 | 100 | Minus |
3R | 32079331 | 3R | 13643169..13643212 | 224..181 | 220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fw2 | 3961 | Fw2 FW2 3961bp | 1654..1759 | 835..934 | 118 | 62.3 | Plus |
BS05060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:11 Download gff for
BS05060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:35 Download gff for
BS05060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 378..1351 | 9..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:09 Download gff for
BS05060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 115..1078 | 17..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:11 Download gff for
BS05060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 378..1351 | 9..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:18 Download gff for
BS05060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 115..1078 | 17..980 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:18 Download gff for
BS05060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13642191..13642427 | 744..980 | 100 | <- | Minus |
3R | 13642512..13642755 | 500..743 | 100 | <- | Minus |
3R | 13642829..13643103 | 225..499 | 100 | <- | Minus |
3R | 13643169..13643209 | 184..224 | 100 | <- | Minus |
3R | 13645753..13645919 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:09 Download gff for
BS05060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9467913..9468149 | 744..980 | 100 | <- | Minus |
arm_3R | 9468234..9468477 | 500..743 | 100 | <- | Minus |
arm_3R | 9468551..9468825 | 225..499 | 100 | <- | Minus |
arm_3R | 9468891..9468931 | 184..224 | 100 | <- | Minus |
arm_3R | 9471475..9471641 | 17..183 | 100 | | Minus |
BS05060.pep Sequence
Translation from 16 to 981
> BS05060.pep
MAENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASG
QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA
FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDE
EIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK
IAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDG
QGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYGKYNKQQSSAQNNYY
NNNTSSNYHQNKNNSNNYQQF*
BS05060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-PA | 321 | CG16901-PA | 1..321 | 1..321 | 1734 | 100 | Plus |
sqd-PC | 308 | CG16901-PC | 1..286 | 1..286 | 1539 | 100 | Plus |
sqd-PE | 308 | CG16901-PE | 1..286 | 1..286 | 1539 | 100 | Plus |
sqd-PB | 344 | CG16901-PB | 1..299 | 1..299 | 1539 | 96.3 | Plus |
sqd-PD | 178 | CG16901-PD | 1..133 | 167..299 | 682 | 91.7 | Plus |