Clone BS05062 Report

Search the DGRC for BS05062

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptNot3-RA
Protein status:BS05062.pep: full length peptide match
Sequenced Size:2567

Clone Sequence Records

BS05062.complete Sequence

2567 bp assembled on 2009-12-07

GenBank Submission: KX794946

> BS05062.complete
GAAGTTATCAGTCGACATGGCTGCGACGAGAAAATTGCAAGGCGAAATTG
ATCGATGTTTAAAAAAGGTAGCAGAGGGCGTTGAAACGTTTGAGGATATT
TGGAAAAAAGTACACAATGCGACAAACACCAATCAGAAGCAAAAACATCT
GCAGGAGAAGTATGAGGCAGACCTCAAAAAGGAAATCAAGAAATTGCAAC
GACTTCGCGACCAAATTAAATCATGGATTGCATCAGCTGAAATTAAGGAT
AAGAGCTCCCTTCTTGAGAATCGACGTCTCATTGAAACACAAATGGAACG
CTTTAAGGTGGTTGAGCGCGAGACGAAAACAAAAGCCTACTCCAAGGAAG
GCTTGGGGGCTGCACAAAAGATGGATCCTGCCCAGCGTATTAAAGACGAC
GCACGCAATTGGTTAACCAGCTCAATAAGTTCCCTTCAAATACAAATTGA
CCAGTATGAGAGCGAGATCGAATCGTTGTTGGCAGGTAAAAAGAAACGTT
TAGATCGAGACAAGCAGGAGCGAATGGATGACCTACGAGGAAAGTTGGAC
CGCCATAAGTTCCACATAACAAAGCTGGAAACTCTGCTTAGGCTGCTTGA
CAATGACGGCGTCGAAGCAGAGCAGGTAAACAAGATCAAAGACGATGTCG
AATACTACATTGATTCATCGCAAGAGCCAGACTTTGAGGAAAATGAGTTC
ATATACGATGATATAATTGGTCTTGATGAAGTGGAGCTAAGTGGCACGGC
TACCACGGACAGCAACAACAGCAACGAGACAAGCGGTTCTCCAAGCAGTG
TCACATCCGGAGGCAGTCCATCACAGTCCCCTGTCACGGTTCAACAAATT
TTAAACACTTCGTCGCAGGGGGCAGCTAGTAGTGGTAGCAGCGCAGCTAG
CGCAGCACTGTTTCAGCAGCAGCTGACAGCGGCACAATCGAATGGCAACA
ATGTGGGCTACGCGAGCGACACAAGTGCAGCTTCTTCGTCTGCTACAACA
TCTACAGATCCTGCAGGCGGCACAGTTGCTGTAAATTGTGTTGGAGGGCT
AGCCGATAAACGCAACAAGAGCAGCGAAAGCAATGCCCTAAAATTGAAAC
CACAACCTCATCAACTTATAAAACCTACCCCTGTACGAGCCACGGCCAAG
CTGCCTCTGAGCAGTGATACCCAAGTCAATAAGATTGTCAGTTCAACTCC
CAGCAAAAATCAGCAACAGCTGCCTACAGCAGCTTCAATCGTTGCAACCT
CCGCTATGCAATCGCAAAGCAGTATCGGAAGTTGCAGCTCCACTGGAGGA
ACGGGAGCATCTCAATCAGCTTCTAGTGGTAACAATCCTGGTAACAATCC
TGCGGTTCAGCCAAATGCTCCAACGCCTGGTCAAAGCGGCATTGCCGCTG
CAGCAGCTTCGACTAATGTTGTTTCGGCGACGATTGTGAGCAGCGCCAAT
GTTCAAGGCCAATCTGTGATCCAACCAACACCAACAATTGCATTTGCTGC
AGTAGCAAAACACAATACATCACTCCTGGAAAATGGTCCTGTTTTGCAAC
AGCAACTAGCAGTAACTCCTACTGTGGCAGCTATCGTAGGAGCTGGAACG
CAGGCGCAGCAAAAACATGTGCCACCATTATCCAATCTTCAAACAAATTC
CCCTCACATACAAAATGGTCTTCCTGTCTCGGACAGTACTAATGACAACA
GCTGCAATGTCGTCGATACGATTTCTCTAAAAACAATGGCACAGGATGCT
ATTAATCGATCTGCGATCGATCCTAATTCACTGAATCAGCAGCAAACAAG
CAGCATCGATCTGAGACAGCCGCAGTCGCAGAAATCACTTCTCCAACATT
TCAACTCTGAAACCAACACGAATCAACAGCAATTGACATCGCAGCAGCAG
CAACAGCTTCAGAATAACTCCCTTGCTGCGACCACAGGTTCTAACAACGG
AACTTCAACTGGTAGTGGTCTCATGAATGTAGCAAACGCTACTGGTCAGC
CTATCAGCGGCAATGCCAAAACGCATGCGTGCCAACCCCAACAGATGGCC
ACGACGGAAGCGCACATTCCCACACTGCTTGGTGTGACACCACTTGGGCC
AACACCACTTCAAAAGGAGCACCAAATGCAGTTCCAAATGATGGAAGCTG
CCTACTATCACCTGCCACAGCCTATGGACACGGAAAAGCTACAAACGTAC
TTTCATCGCGCACCAGTGCTCACGCCATCGCACTATCCCCAGGCACAGAT
GCCAATATATGATACAGTTGAGTTTTATCAACGACTCTCAACGGAGACCC
TTTTTTTTGTGTTCTACTATATGGAGGGCTCCAAGGCCCAGTATCTAGCG
GCCAAGGCCTTAAAAAAGCAGAGCTGGCGTTTCCACACAAAGTATATGAT
GTGGTTTCAAAGGCACGAGGAGCCGAAGATTATCAACGATGATTACGAAC
AGGGTACGTACATCTATTTTGATTATGAAAAGTGGAGTCAGCGAAAGAAG
GAGGGATTCACCTTTGAATACAAGTACTTAGAGGACAAGGAGCTGAATTG
AAAGCTTTCTAGACCAT

BS05062.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-RB 2535 CG8426-PB 1..2535 17..2551 12675 100 Plus
Not3-RA 2535 CG8426-PA 1..2535 17..2551 12675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-RB 3919 CG8426-RB 580..3116 17..2553 12685 100 Plus
Not3-RA 3406 CG8426-RA 580..3116 17..2553 12685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5661359..5662168 1099..290 4050 100 Minus
2R 25286936 2R 5657642..5658218 2243..1667 2885 100 Minus
2R 25286936 2R 5660807..5661157 1520..1170 1755 100 Minus
2R 25286936 2R 5657371..5657583 2453..2241 1065 100 Minus
2R 25286936 2R 5662227..5662378 289..138 760 100 Minus
2R 25286936 2R 5660599..5660747 1669..1521 745 100 Minus
2R 25286936 2R 5657209..5657313 2553..2449 525 100 Minus
2R 25286936 2R 5662456..5662555 139..40 500 100 Minus
2R 25286936 2R 5661219..5661288 1169..1100 350 100 Minus
Blast to na_te.dros performed 2014-11-28 02:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6819 1817..1914 122 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2371 1862..1914 118 71.7 Plus

BS05062.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:58 Download gff for BS05062.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 578..3111 17..2550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:00 Download gff for BS05062.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 580..3113 17..2550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:57 Download gff for BS05062.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 578..3111 17..2550 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:08 Download gff for BS05062.complete
Subject Subject Range Query Range Percent Splice Strand
Not3-RA 580..3113 17..2550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:08 Download gff for BS05062.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5657372..5657581 2243..2452 100 <- Minus
2R 5657212..5657309 2453..2550 100 <- Minus
2R 5657643..5658217 1668..2242 100 <- Minus
2R 5660601..5660747 1521..1667 100 <- Minus
2R 5660807..5661157 1170..1520 100 <- Minus
2R 5661219..5661288 1100..1169 100 <- Minus
2R 5661359..5662168 290..1099 100 <- Minus
2R 5662227..5662376 140..289 100 <- Minus
2R 5662456..5662553 42..139 100 <- Minus
2R 5662619..5662643 17..41 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:00 Download gff for BS05062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1549732..1549881 140..289 100 <- Minus
arm_2R 1549961..1550058 42..139 100 <- Minus
arm_2R 1550124..1550148 17..41 100   Minus
arm_2R 1544717..1544814 2453..2550 100 <- Minus
arm_2R 1544877..1545086 2243..2452 100 <- Minus
arm_2R 1545148..1545722 1668..2242 100 <- Minus
arm_2R 1548106..1548252 1521..1667 100 <- Minus
arm_2R 1548312..1548662 1170..1520 100 <- Minus
arm_2R 1548724..1548793 1100..1169 100 <- Minus
arm_2R 1548864..1549673 290..1099 100 <- Minus

BS05062.3prime Sequence

915 bp (838 high quality bases) assembled on 2005-12-02

> BS05062.3prime
ATGGTCTAGAAAGCTTTCAATTCAGCTCCTTGTCCTCTAAGTACTTGTAT
TCAAAGGTGAATCCCTCCTTCTTTCGCTGACTCCACTTTTCATAATCAAA
ATAGATGTACGTACCCTGTTCGTAATCATCGTTGATAATCTTCGGCTCCT
CGTGCCTTTGAAACCACATCATATACTTTGTGTGGAAACGCCAGCTCTGC
TTTTTTAAGGCCTTGGCCGCTAGATACTGGGCCTTGGAGCCCTCCATATA
GTAGAACACAAAAAAAAGGGTCTCCGTTGAGAGTCGTTGATAAAACTCAA
CTGTATCATATATTGGCATCTGTGCCTGGGGATAGTGCGATGGCGTGAGC
ACTGGTGCGCGATGAAAGTACGTTTGTAGCTTTTCCGTGTCCATAGGCTG
TGGCAGGTGATAGTAGGCAGCTTCCATCATTTGGAACTGCATTTGGTGCT
CCTTTTGAAGTGGTGTTGGCCCAAGTGGTGTCACACCAAGCAGTGTGGGA
ATGTGCGCTTCCGTCGTGGCCATCTGTTGGGGTTGGCACGCATGCGTTTT
GGCATTGCCGCTGATAGGCTGACCAGTAGCGTTTGCTACATTCATGAGAC
CACTACCAGTTGAAGTTCCGTTGTTAGAACCTGTGGTCGCAGCAAGGGAG
TTATTCTGAAGCTGTTGCTGCTGCTGCGATGTCAATTGCTGTTGATTCGT
GTTGGTTTCAGAGTTGAAATGTTGGAGAAGTGATTTCTGCGACTGCGGCT
GTCTCAGATCGATGCTGCTTGTTTGCTGCTGATTCAGTGAATTAGGATCG
ATCGCAGATCGATTAATAGCATCCTGTGCCATTGTTTTTAGAGAAATCGT
ATCGACGACATTGCAGCTGTTGTCATTAGTACTGTCCGAGACAGGAAGAA
CATTTTGTATGTGAG

BS05062.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8426-PA 2535 l(2)NC136-RA 1637..2535 915..17 4470 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-RB 3919 CG8426-RB 2216..3116 915..15 4490 99.9 Minus
Not3-RA 3406 CG8426-RA 2216..3116 915..15 4490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5657642..5658216 325..899 2875 100 Plus
2R 25286936 2R 5657371..5657583 115..327 1065 100 Plus
2R 25286936 2R 5657209..5657313 15..119 525 100 Plus
Blast to na_te.dros performed 2015-02-10 19:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6819 751..654 122 61.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2371 706..654 118 71.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6711..6774 718..657 108 65.6 Minus

BS05062.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:56 Download gff for BS05062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8426-PA 1637..2535 17..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:13 Download gff for BS05062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8426-PA 1637..2535 17..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:06 Download gff for BS05062.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 2216..3116 15..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:27 Download gff for BS05062.3prime
Subject Subject Range Query Range Percent Splice Strand
Not3-RA 2216..3116 15..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:27 Download gff for BS05062.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5657209..5657309 15..115 100 <- Plus
2R 5657372..5657581 116..325 100 <- Plus
2R 5657643..5658217 326..900 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:06 Download gff for BS05062.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1544714..1544814 15..115 100 <- Plus
arm_2R 1544877..1545086 116..325 100 <- Plus
arm_2R 1545148..1545722 326..900 99 <- Plus

BS05062.5prime Sequence

851 bp (788 high quality bases) assembled on 2005-12-02

> BS05062.5prime
GAAGTTATCAGTCGACATGGCTGCGACGAGAAAATTGCAAGGCGAAATTG
ATCGATGTTTAAAAAAGGTAGCAGAGGGCGTTGAAACGTTTGAGGATATT
TGGAAAAAAGTACACAATGCGACAAACACCAATCAGAAGCAAAAACATCT
GCAGGAGAAGTATGAGGCAGACCTCAAAAAGGAAATCAAGAAATTGCAAC
GACTTCGCGACCAAATTAAATCATGGATTGCATCAGCTGAAATTAAGGAT
AAGAGCTCCCTTCTTGAGAATCGACGTCTCATTGAAACACAAATGGAACG
CTTTAAGGTGGTTGAGCGCGAGACGAAAACAAAAGCCTACTCCAAGGAAG
GCTTGGGGGCTGCACAAAAGATGGATCCTGCCCAGCGTATTAAAGACGAC
GCACGCAATTGGTTAACCAGCTCAATAAGTTCCCTTCAAATACAAATTGA
CCAGTATGAGAGCGAGATCGAATCGTTGTTGGCAGGTAAAAAGAAACGTT
TAGATCGAGACAAGCAGGAGCGAATGGATGACCTACGAGGAAAGTTGGAC
CGCCATAAGTTCCACATAACAAAGCTGGAAACTCTGCTTAGGCTGCTTGA
CAATGACGGCGTCGAAGCAGAGCAGGTAAACAAGATCAAAGACGATGTCG
AATACTACATTGATTCATCGCAAGAGCCAGACTTTGAGGAAAATGAGTTC
ATATACGATGATATAATTGGTCTTGATGAAGTGGAGCTAAGTGGCACGGC
TACCACGGACAGCAACAACAGCAACGAGACAAGCGGTTCTCCTAGCAGTG
TCACATCCGGAGGCAGTCCATCACAGTCCCCTGTCACGGTTCAACAAATT
T

BS05062.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8426-PA 2535 l(2)NC136-RA 1..835 17..851 4150 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-RB 3919 CG8426-RB 580..1414 17..851 4160 99.9 Plus
Not3-RA 3406 CG8426-RA 580..1414 17..851 4160 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5661607..5662168 851..290 2795 99.8 Minus
2R 25286936 2R 5662227..5662378 289..138 760 100 Minus
2R 25286936 2R 5662456..5662555 139..40 500 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:53:29 has no hits.

BS05062.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:00:57 Download gff for BS05062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8426-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:14 Download gff for BS05062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8426-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:38 Download gff for BS05062.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)NC136-RA 573..1414 9..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:54 Download gff for BS05062.5prime
Subject Subject Range Query Range Percent Splice Strand
Not3-RA 573..1414 9..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:54 Download gff for BS05062.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5661607..5662168 290..851 99 <- Minus
2R 5662227..5662376 140..289 100 <- Minus
2R 5662456..5662553 42..139 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:38 Download gff for BS05062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1549112..1549673 290..851 99 <- Minus
arm_2R 1549732..1549881 140..289 100 <- Minus
arm_2R 1549961..1550058 42..139 100 <- Minus

BS05062.pep Sequence

Translation from 16 to 2550

> BS05062.pep
MAATRKLQGEIDRCLKKVAEGVETFEDIWKKVHNATNTNQKQKHLQEKYE
ADLKKEIKKLQRLRDQIKSWIASAEIKDKSSLLENRRLIETQMERFKVVE
RETKTKAYSKEGLGAAQKMDPAQRIKDDARNWLTSSISSLQIQIDQYESE
IESLLAGKKKRLDRDKQERMDDLRGKLDRHKFHITKLETLLRLLDNDGVE
AEQVNKIKDDVEYYIDSSQEPDFEENEFIYDDIIGLDEVELSGTATTDSN
NSNETSGSPSSVTSGGSPSQSPVTVQQILNTSSQGAASSGSSAASAALFQ
QQLTAAQSNGNNVGYASDTSAASSSATTSTDPAGGTVAVNCVGGLADKRN
KSSESNALKLKPQPHQLIKPTPVRATAKLPLSSDTQVNKIVSSTPSKNQQ
QLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPGNNPAVQPN
APTPGQSGIAAAAASTNVVSATIVSSANVQGQSVIQPTPTIAFAAVAKHN
TSLLENGPVLQQQLAVTPTVAAIVGAGTQAQQKHVPPLSNLQTNSPHIQN
GLPVSDSTNDNSCNVVDTISLKTMAQDAINRSAIDPNSLNQQQTSSIDLR
QPQSQKSLLQHFNSETNTNQQQLTSQQQQQLQNNSLAATTGSNNGTSTGS
GLMNVANATGQPISGNAKTHACQPQQMATTEAHIPTLLGVTPLGPTPLQK
EHQMQFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDT
VEFYQRLSTETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRH
EEPKIINDDYEQGTYIYFDYEKWSQRKKEGFTFEYKYLEDKELN*

BS05062.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Not3-PB 844 CG8426-PB 1..844 1..844 4301 100 Plus
Not3-PA 844 CG8426-PA 1..844 1..844 4301 100 Plus
Mur89F-PC 2158 CG4090-PC 270..678 235..666 168 22.4 Plus
Mur89F-PB 2159 CG4090-PB 270..678 235..666 168 22.4 Plus
CG46026-PA 666 CG46026-PA 183..653 239..696 166 19 Plus