Clone Sequence Records
BS05064.complete Sequence
3446 bp assembled on 2009-12-07
GenBank Submission: KX798941
> BS05064.complete
GAAGTTATCAGTCGACATGGTGGAGCTAAAGATGGGCGATCACAACGTGG
AGGCCACCACCTGGGATCCCGGCGACAGCAAGGACTGGTCGGTGCCCATT
AAGCCGCTAACGGAGAAGTGGAAATTGGTGCCGGCATTCTTGCAAGTAAA
AGGATTAGTGAAGCAGCACATTGATTCCTTCAATCACTTCATCAACGTGG
ACATAAAAAAGATTGTGAAGGCTAACGAGCTGGTTACCAGTGGAGCTGAT
CCTTTGTTTTACCTAAAGTACTTGGATGTGCGGGTGGGCAAGCCGGACAT
CGACGATGGCTTCAACATCACCAAAGCGACCACACCGCACGAATGCCGTC
TGAGGGACACCACGTACTCCGCCCCCATCACCGTGGACATCGAGTACACG
AGGGGAACCCAGCGGATCAAGCGGAATAATTTGCTCATCGGAAGGATGCC
CCTCATGCTGCGCTGCTCCAATTGCGCCCTTACCGGCAAGTCGGAGTTCG
AGCTGTCCAAACTGAATGAGTGTCCACTAGATCCTGGCGGCTACTTTGTG
GTGCGAGGTCAGGAGAAGGTTATCCTCATTCAGGAGCAGCTGTCATGGAA
CAAGATGCTCACCGAGGACTTCAACGGTGTGGTGCAATGCCAGGTTACCT
CCTCCACACACGAAAAGAAGTCACGTACTTTGGTGTTGAGCAAGCATGGA
AAGTACTACCTCAAGCACAACTCGATGACGGACGACATACCCATTGTGGT
GATCTTTAAAGCTCTGGGCGTAGTTTCCGATCAGGAAATTCAATCGCTAA
TTGGCATTGACAGCAAATCGCAGAATAGATTCGGTGCCTCTCTAATAGAC
GCCTACAACCTGAAGGTCTTCACACAGCAAAGGGCTTTGGAGTACATGGG
CTCCAAGTTGGTGGTCAAGCGTTTTCAGAGTGCCACCACAAAAACGCCAT
CGGAAGAGGCCCGTGAGCTGCTGTTAACTACCATTTTGGCGCATGTGCCT
GTGGACAACTTTAACTTGCAAATGAAGGCCATCTATGTATCCATGATGGT
GCGTCGTGTTATGGCCGCCGAGCTGGACAAAACGCTCTTTGACGACCGCG
ATTACTACGGCAACAAGCGACTGGAGCTGGCAGGTTCTTTGCTCTCCATG
ATGTTCGAGGATCTGTTCAAGCGCATGAACTGGGAGCTTAAGACCATTGC
GGACAAAAATATACCCAAGGTGAAGGCGGCGCAGTTCGATGTGGTCAAGC
ACATGAGGGCGGCACAAATCACAGCGGGACTGGAGTCTGCTATCAGTTCC
GGCAACTGGACGATCAAGAGATTTAAGATGGAAAGAGCTGGCGTAACGCA
GGTTCTGTCCCGTTTGAGTTATATCTCAGCGTTGGGAATGATGACGCGTG
TGAACTCGCAGTTTGAGAAGACGCGTAAGGTGTCGGGACCCAGATCTCTG
CAGCCCAGTCAATGGGGTATGCTGTGTCCCTCGGACACTCCAGAAGGTGA
GGCCTGTGGTCTGGTCAAAAATCTGGCTCTGATGACGCACATCACCACCG
AAGTTGAGGAGCGACCCGTTATGATAGTGGCTTTCAATGCTGGCGTGGAA
GACATACGAGAAGTGAGCGGTAACCCCATCAATAACCCGAATGTATTCCT
CGTCTTCATCAATGGTAATGTTCTGGGTCTCACCTTGAACCACAAGCACC
TGGTGCGGAACCTTCGTTACATGCGCAGAAAGGGTCGGATGGGCAGCTAC
GTGTCTGTGCACACATCATACACCCAGCGATGCATCTACATCCACACGGA
TGGCGGTCGTCTGTGCCGCCCCTATGTAATTGTGGAGAACCGTCGCCCGC
TGGTGAAGCAGCATCACCTGGACGAGCTGAATCGAGGGATTCGTAAGTTC
GACGACTTTCTCTTGGACGGACTAATCGAGTATTTAGATGTGAACGAGGA
GAACGATTCGTTTATCGCCTGGAACGAGGATCAAATAGAGGACCGGACTA
CACACTTGGAAATCGAACCCTTCACTTTGCTGGGAGTTTGTGCTGGATTG
GTGCCCTATCCTCATCACAATCAGAGTCCCAGGAACACCTATCAGTGTGC
TATGGGTAAGCAGGCGATGGGAATGATTGGCTATAACCAGAAGAACAGGA
TTGACTCGCTGATGTATAATCTGGTGTATCCCCATGCTCCTATGGTGAAA
TCCAAGACTATCGAGCTTACCAACTTTGACAAATTGCCTGCTGGTCAGAA
TGCCACTGTGGCAGTTATGAGTTACTCTGGCTACGACATCGAAGATGCGC
TGATCTTAAACAAGGCGTCGATAGATCGGGGATATGGACGCTGTCTGGTG
TACAAAAACTCAAAGTGCACTGTGAAACGGTATGCGAATCAAACCTTCGA
CAGAATCATGGGTCCCATGAAAGATGCGCTGACGAACAAGGTTATCTTCA
AGCACGACGTTCTGGACACTGACGGAATTGTGGCTCCAGGCGAGCAGGTT
CAAAACAAACAGATCATGATTAACAAGGAAATGCCCGCGGTAACATCGAT
GAATCCGCTGCAGGGTCAGTCTGCACAGGTTCCCTACACCGCAGTACCCA
TTAGCTATAAGGGTCCCGAGCCCAGTTACATCGAACGCGTTATGGTTTCC
GCCAATGCCGAGGAAGACTTTCTCATCAAGATCCTGCTGCGCCAGACACG
TATCCCCGAGATCGGGGACAAGTTCAGCTCTCGGCACGGACAAAAAGGCG
TGACTGGGTTGATTGTTGAACAGGAGGATATGCCCTTTAATGACTTCGGC
ATCTGCCCGGATATGATAATGAACCCACACGGATTCCCCTCCCGTATGAC
AGTGGGTAAAACGTTAGAGCTGCTCGGCGGGAAGGCTGGTCTCCTGGAGG
GCAAGTTCCACTATGGAACTGCGTTCGGGGGCTCCAAGGTGGAAGACATT
CAGGCGGAACTGGAGCGCCATGGTTTCAACTACGTGGGCAAGGACTTTTT
CTACTCCGGCATCACAGGAACACCACTGGAGGCCTACATCTACTCGGGAC
CCGTGTACTACCAAAAACTGAAGCATATGGTGCAGGATAAGATGCATGCC
CGTGCCCGGGGACCCAAGGCGGTGCTCACCCGTCAGCCGACGCAGGGCAG
GAGTCGTGAGGGTGGCCTTCGTCTGGGCGAAATGGAACGGGATTGTCTCA
TTTCTTACGGAGCTAGTATGCTGATCATGGAGCGTCTGATGATCTCATCG
GATGCCTTTGAGGTGGATGTTTGCCGGACTTGCGGCAGGATGGCCTACTG
CTCCTGGTGTCATTTCTGCCAGTCGTCGGCCAATGTCTCTAAGATATCCA
TGCCGTATGCATGCAAACTGCTCTTCCAGGAGTTGACCAGCATGAATGTG
GTGCCGAAAATGATTTTGGAAAACTATTAAAAGCTTTCTAGACCAT
BS05064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpIII128-RA | 3414 | CG8344-PA | 1..3414 | 17..3430 | 17070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpIII128-RA | 3532 | CG8344-RA | 75..3492 | 13..3430 | 17075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12040052..12042583 | 899..3430 | 12660 | 100 | Plus |
| 2R | 25286936 | 2R | 12039115..12040002 | 13..900 | 4425 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:23:29 has no hits.
BS05064.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:11 Download gff for
BS05064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpIII128-RA | 30..3441 | 17..3428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:06 Download gff for
BS05064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpIII128-RA | 30..3441 | 17..3428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:14 Download gff for
BS05064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpIII128-RA | 30..3441 | 17..3428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:25 Download gff for
BS05064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpIII128-RA | 79..3490 | 17..3428 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:25 Download gff for
BS05064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12039119..12040001 | 17..899 | 100 | -> | Plus |
| 2R | 12040053..12042581 | 900..3428 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:06 Download gff for
BS05064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7926624..7927506 | 17..899 | 100 | -> | Plus |
| arm_2R | 7927558..7930086 | 900..3428 | 100 | | Plus |
BS05064.3prime Sequence
915 bp (795 high quality bases) assembled on 2005-12-02
> BS05064.3prime
ATGGTCTAGAAAGCTTTTAATAGTTTTCCAAAATCATTTTCGGCACCACA
TTCATGCTGGTCAACTCCTGGAAGAGCAGTTTGCATGCATACGGCATGGA
TATCTTAGAGACATTGGCCGACGACTGGCAGAAATGACACCAGGAGCAGT
AGGCCATCCTGCCGCAAGTCCGGCAAACATCCACCTCAAAGGCATCCGAT
GAGATCATCAGACGCTCCATGATCAGCATACTAGCTCCGTAAGAAATGAG
ACAATCCCGTTCCATTTCGCCCAGACGAAGGCCACCCTCACGACTCCTGC
CCTGCGTCGGCTGACGGGTGAGCACCGCCTTGGGTCCCCGGGCACGGGCA
TGCATCTTATCCTGCACCATATGCTTCAGTTTTTGGTAGTACACGGGTCC
CGAGTAGATGTAGGCCTCCAGTGGTGTTCCTGTGATGCCGGAGTAGAAAA
AGTCCTTGCCCACGTAGTTGAAACCATGGCGCTCCAGTTCCGCCTGAATG
TCTTCCACCTTGGAGCCCCCGAACGCAGTTCCATAGTGGAACTTGCCCTC
CAGGAGACCAGCCTTCCCGCCGAGCAGCTCTAACGTTTTACCCACTGTCA
TACGGGAGGGGAATCCGTGTGGGTTCATTATCATATCCGGGCAGATGCCG
AAGTCATTAAAGGGCATATCCTCCTGTTCAACAATCAACCCAGTCACGCC
TTTTTGTCCGTGCCGAGAGCTGAACTTGTCCCCGATCTCGGGGATACGTG
TCTGGCGCAGCAGGATCTTGATGAGAAAGTCTTCCTCGGCATTGGCGGAA
ACCATAACGCGTTCGATGTAACTGGGCTCGGGACCCTTATAGCTAATGGG
TACTGCGGTGTAGGGAACCTGTGCAGACTGACCCTGCAGCGGATTCATCG
ATGTTACGGCGGGCA
BS05064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8344-PA | 3414 | RpIII128-RA | 2516..3414 | 915..17 | 4470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpIII128-RA | 3532 | CG8344-RA | 2594..3492 | 915..17 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12041685..12042583 | 915..17 | 4480 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:21:45 has no hits.
BS05064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:00 Download gff for
BS05064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8344-PA | 2517..3414 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:19 Download gff for
BS05064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8344-PA | 2517..3414 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:00 Download gff for
BS05064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpIII128-RA | 2546..3443 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:35:32 Download gff for
BS05064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpIII128-RA | 2595..3492 | 17..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:35:32 Download gff for
BS05064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12041686..12042583 | 17..914 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:00 Download gff for
BS05064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7929191..7930088 | 17..914 | 99 | | Minus |
BS05064.5prime Sequence
897 bp (820 high quality bases) assembled on 2005-12-02
> BS05064.5prime
GAAGTTATCAGTCGACATGGTGGAGCTAAAGATGGGCGATCACAACGTGG
AGGCCACCACCTGGGATCCCGGCGACAGCAAGGACTGGTCGGTGCCCATT
AAGCCGCTAACGGAGAAGTGGAAATTGGTGCCGGCATTCTTGCAAGTAAA
AGGATTAGTGAAGCAGCACATTGATTCCTTCAATCACTTCATCAACGTGG
ACATAAAAAAGATTGTGAAGGCTAACGAGCTGGTTACCAGTGGAGCTGAT
CCTTTGTTTTACCTAAAGTACTTGGATGTGCGGGTGGGCAAGCCGGACAT
CGACGATGGCTTCAACATCACCAAAGCGACCACACCGCACGAATGCCGTC
TGAGGGACACCACGTACTCCGCCCCCATCACCGTGGACATCGAGTACACG
AGGGGAACCCAGCGGATCAAGCGGAATAATTTGCTCATCGGAAGGATGCC
CCTCATGCTGCGCTGCTCCAATTGCGCCCTTACCGGCAAGTCGGAGTTCG
AGCTGTCCAAACTGAATGAGTGTCCACTAGATCCTGGCGGCTACTTTGTG
GTGCGAGGTCAGGAGAAGGTTATCCTCATTCAGGAGCAGCTGTCATGGAA
CAAGATGCTCACCGAGGACTTCAACGGTGTGGTGCAATGCCAGGTTACCT
CCTCCACACACGAAAAGAAGTCACGTACTTTGGTGTTGAGCAAGCATGGA
AAGTACTACCTCAAGCACAACTCGATGACGGACGACATACCCATTGTGGT
GATCTTTAAAGCTCTGGGCGTAGTTTCCGATCAGGAAATTCAATCGCTAA
TTGGCATTGACAGCAAATCGCAGAATAGATTCGGTGCCTCTCTAATAGAC
GCCTACAACCTGAAGGTCTTCACACAGCAAAGGGCTTTGGAGTACAT
BS05064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8344-PA | 3414 | RpIII128-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpIII128-RA | 3532 | CG8344-RA | 75..959 | 13..897 | 4410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12039115..12039999 | 13..897 | 4410 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:39:56 has no hits.
BS05064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:01 Download gff for
BS05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8344-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:20 Download gff for
BS05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8344-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:40:29 Download gff for
BS05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpIII128-RA | 20..910 | 5..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:07 Download gff for
BS05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpIII128-RA | 69..959 | 5..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:07 Download gff for
BS05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12039109..12039999 | 5..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:40:29 Download gff for
BS05064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7926614..7927504 | 5..897 | 99 | | Plus |
BS05064.pep Sequence
Translation from 16 to 3429
> BS05064.pep
MVELKMGDHNVEATTWDPGDSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQ
HIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRVGKPDIDDGFN
ITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRC
SNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTE
DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKAL
GVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVV
KRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMA
AELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIP
KVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRL
SYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLV
KNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFING
NVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLC
RPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFI
AWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQA
MGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV
MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGP
MKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQG
QSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIG
DKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTL
ELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGIT
GTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGG
LRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHF
CQSSANVSKISMPYACKLLFQELTSMNVVPKMILENY*
BS05064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpIII128-PA | 1137 | CG8344-PA | 1..1137 | 1..1137 | 5944 | 100 | Plus |
| RpII140-PB | 1176 | CG3180-PB | 28..1175 | 35..1134 | 1890 | 36.7 | Plus |
| RpII140-PA | 1176 | CG3180-PA | 28..1175 | 35..1134 | 1890 | 36.7 | Plus |
| RpI135-PA | 1129 | CG4033-PA | 39..1120 | 51..1128 | 967 | 26.7 | Plus |
