Clone Sequence Records
BS05069.complete Sequence
2009 bp assembled on 2009-12-07
GenBank Submission: KX799097
> BS05069.complete
GAAGTTATCAGTCGACATGTTCGCAAGTCAGAGCAAGGCTTGTGATTCTC
CGAGTGAGACTGTGCACCTACAGTCTTTACCAAATCATATTGAAGATCTA
AAATTTAGAAATTCTGATGTTGAAACGGATGATGATCTTCACTTCCCTGG
AATTGCAGCTAAAAATAAAATCTTGAAGCTTAGCTGGTGGCATTCTCCTG
TTGATATGCATTATGTAGCGACAGAATCAGTGCAACCAAAAAAAAGTGAT
AAAGTACCGAGCAATAAAATTAAAAAAGTTGAGAACAATAATACTTTAGT
TAATGGTTGTAGTAAAACTTCAGCAAGATCTGTTCCATTACTCAAATATA
ATCGTCCAGACCAGGATGGGGACAGCGAAGAAAACATAACAAGCGTTCTT
GAGCCAAACGTTGATGAAATCTATTCTAAAGACTCAGAACGGCTTGTGGA
TGATTCAAAACCATGTATTGGACTATTAAATCCAGATCAGGAGGATCAAA
TGAAAGTATGCGGTTATCGACGTTCTCTTATGCGAACTGGTTTTTGTTGG
GCATGCATCTTCTTAACTGGAGGTCTGTTGCGCCTCGTGTTACATTGGTG
GCGTCATTTATATTTATATGCCACTTGCTCTCAATGTTCATTGGAGGAGG
CAGAACAGGTTTTGGTAACAGAGGATTATCAAGGAAAGCACAAAATGTAC
CATGTAAAGCAAATTCAAGTCCTAACGTCGAGCAACCTTAAGACACTTTT
GGAAAAGGAACAGCAATCCATAGAAAGAACTCATATAGAATGCGATCATG
TAGAAAACGTCCTTCAACTGTCAGTTCATTTTACCTCGGCCCAATTCAAA
AAATGCTCATCAATACGAATTTTTCGCTGCAAGCAATTGGTTTATGCTTG
GAACAATAATACAAATAGATTTCAAAGGATAAATGGACTCGACCTAAATA
TTCCTTGTTCATATTATCACCAACAGCGTGGATTACCTGTACATGAACAG
ATTTCAAGGCGAATTGTTTTCGGAGATAATGAGATAACTGTACCATTGCG
AGATTTCAAGACATTGCTGTTCTTAGAAGTACTTAATCCTTTTTACGTTT
TTCAATTATTTTCTGTAATTCTTTGGTTTACATATGATTACTATTACTAT
GCTTGCGTAATACTCTTGATGTCAGTTTTTGGTATAACAGTGTCTGTTTT
ACAAACGAAAAAGAATCAGGATGTGCTCCAAAAAACAGTATATAACACTG
GTAATGCTTGGGTTGTTGATCATAAAGGACTGTCTAAAGAGCTTCCAACG
CGAGCGATAGTACCTGGGGACATCATTGAAATACCCTCATCAGGGTGTAC
GCTGCATTGCGATGCAATCTTAATATCAGGAAACTGCATTCTAGATGAGT
CTATGCTTACTGGTGAAAGTGTGCCAGTGACCAAAACTCCTCTACCGTCG
AAACGTGACATGATTTTTGATAAAACAGAGCATGCCAGACATACACTTTT
TTGTGGCACAAAGGTTATTCAGACTCGTTATATTGGCTCCAAAAAAGTAT
TAGCATTTGTAATAAACACTGGAAACATAACGGCAAAAGGAGAACTTATA
CGTTCTATTCTTTATCCCCCCCCTGTGGACTACAAGTTTGAACAAGATTC
GTACAAATTTATCCAGTTTCTGGCCATAATAGCATGTGTAGGATTTATTT
ATACGCTTGTAACTAAAATCTTGCGTGGAACGGATCCTGTGAAAATAGCA
GTTGAATCACTTGACCTTATCACAATTGTAGTCCCACCTGCACTTCCAGC
GGCAATGACAGTCGGTCGATTTTATGCACAAAAGCGGCTAAAGACTAGTG
AAATATTTTGCATATCTCCTAGGTCTATAAATGTGGCAGGAAGCATAAAT
TGTTGTTGCTTTGACAAGATTTTAAAGTACTCCATTTTACGCGAGCGGAG
AGAGAGAGCAATTTTGGCCGTCACCAAAAAAGTGTCTGCATAGAAGCTTT
CTAGACCAT
BS05069.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32000-RD | 1977 | CG32000-PD | 1..1977 | 17..1993 | 9885 | 100 | Plus |
| CG32000-RH | 4356 | CG32000-PH | 1..1903 | 17..1919 | 9515 | 100 | Plus |
| CG32000-RE | 1788 | CG32000-PE | 1..1788 | 206..1993 | 8940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32000-RD | 3219 | CG32000-RD | 1056..3032 | 17..1993 | 9885 | 100 | Plus |
| CG32000-RH | 5743 | CG32000-RH | 1060..2962 | 17..1919 | 9515 | 100 | Plus |
| CG32000-RE | 2262 | CG32000-RE | 239..2075 | 157..1993 | 9185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 137805..138310 | 1212..1717 | 2530 | 100 | Plus |
| 4 | 1348131 | 4 | 134529..134964 | 17..452 | 2180 | 100 | Plus |
| 4 | 1348131 | 4 | 137391..137752 | 852..1213 | 1810 | 100 | Plus |
| 4 | 1348131 | 4 | 136878..137168 | 452..742 | 1455 | 100 | Plus |
| 4 | 1348131 | 4 | 138374..138574 | 1718..1918 | 1005 | 100 | Plus |
| 4 | 1348131 | 4 | 137223..137332 | 742..851 | 550 | 100 | Plus |
| 4 | 1348131 | 4 | 139820..139896 | 1917..1993 | 385 | 100 | Plus |
| 2R | 25286936 | 2R | 4324087..4324132 | 1948..1993 | 200 | 95.7 | Plus |
| 4 | 1348131 | 4 | 1275685..1275729 | 1993..1949 | 195 | 95.6 | Minus |
| 2R | 25286936 | 2R | 6463112..6463156 | 1993..1949 | 195 | 95.6 | Minus |
| 3R | 32079331 | 3R | 2115916..2115960 | 1993..1949 | 195 | 95.6 | Minus |
| 3L | 28110227 | 3L | 22720569..22720613 | 1993..1949 | 195 | 95.6 | Minus |
| 2L | 23513712 | 2L | 17335653..17335697 | 1993..1949 | 195 | 95.6 | Minus |
| 4 | 1348131 | 4 | 35203..35243 | 1953..1993 | 190 | 97.6 | Plus |
| 4 | 1348131 | 4 | 208728..208768 | 1993..1953 | 190 | 97.6 | Minus |
| 4 | 1348131 | 4 | 789015..789055 | 1993..1953 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 553878..553918 | 1953..1993 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 603240..603280 | 1953..1993 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 1890845..1890885 | 1993..1953 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 2806383..2806423 | 1953..1993 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 2842070..2842110 | 1993..1953 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 2905990..2906030 | 1953..1993 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 3062166..3062206 | 1993..1953 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 3120166..3120206 | 1993..1953 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 5530054..5530094 | 1993..1953 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 5630761..5630801 | 1993..1953 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 8566890..8566930 | 1953..1993 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 320273..320313 | 1953..1993 | 190 | 97.6 | Plus |
| 3R | 32079331 | 3R | 2763278..2763330 | 1993..1941 | 190 | 90.6 | Minus |
| 3R | 32079331 | 3R | 3587775..3587815 | 1993..1953 | 190 | 97.6 | Minus |
| 3R | 32079331 | 3R | 3738838..3738878 | 1993..1953 | 190 | 97.6 | Minus |
| 3R | 32079331 | 3R | 30820282..30820322 | 1953..1993 | 190 | 97.6 | Plus |
| 3R | 32079331 | 3R | 832027..832067 | 1953..1993 | 190 | 97.6 | Plus |
| 3R | 32079331 | 3R | 950884..950924 | 1993..1953 | 190 | 97.6 | Minus |
| 3R | 32079331 | 3R | 2571943..2571983 | 1953..1993 | 190 | 97.6 | Plus |
| 3R | 32079331 | 3R | 2758854..2758906 | 1993..1941 | 190 | 90.6 | Minus |
| 3L | 28110227 | 3L | 1486781..1486821 | 1953..1993 | 190 | 97.6 | Plus |
| 3L | 28110227 | 3L | 15086122..15086162 | 1953..1993 | 190 | 97.6 | Plus |
| 3L | 28110227 | 3L | 23494896..23494936 | 1993..1953 | 190 | 97.6 | Minus |
| 3L | 28110227 | 3L | 23953110..23953150 | 1953..1993 | 190 | 97.6 | Plus |
| 3L | 28110227 | 3L | 24286192..24286232 | 1993..1953 | 190 | 97.6 | Minus |
| 3L | 28110227 | 3L | 25804387..25804427 | 1993..1953 | 190 | 97.6 | Minus |
| 3L | 28110227 | 3L | 25875938..25875978 | 1953..1993 | 190 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27188830..27188870 | 1953..1993 | 190 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27198693..27198733 | 1953..1993 | 190 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27208029..27208069 | 1953..1993 | 190 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27234873..27234913 | 1953..1993 | 190 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27990171..27990211 | 1953..1993 | 190 | 97.6 | Plus |
| 2L | 23513712 | 2L | 19740729..19740769 | 1953..1993 | 190 | 97.6 | Plus |
| 2L | 23513712 | 2L | 22218520..22218560 | 1993..1953 | 190 | 97.6 | Minus |
| 2L | 23513712 | 2L | 22549017..22549057 | 1993..1953 | 190 | 97.6 | Minus |
| 2L | 23513712 | 2L | 22979695..22979735 | 1953..1993 | 190 | 97.6 | Plus |
| 2L | 23513712 | 2L | 23186400..23186440 | 1953..1993 | 190 | 97.6 | Plus |
| 2L | 23513712 | 2L | 23447300..23447340 | 1993..1953 | 190 | 97.6 | Minus |
| U | 3151297 | U | 1751791..1751831 | 1993..1953 | 190 | 97.6 | Minus |
| U | 3151297 | U | 2094033..2094073 | 1953..1993 | 190 | 97.6 | Plus |
| U | 3151297 | U | 2886618..2886658 | 1953..1993 | 190 | 97.6 | Plus |
| Y | 3667352 | Y | 1097891..1097931 | 1953..1993 | 190 | 97.6 | Plus |
| Y | 3667352 | Y | 1549807..1549847 | 1993..1953 | 190 | 97.6 | Minus |
| X | 23542271 | X | 21776062..21776102 | 1993..1953 | 190 | 97.6 | Minus |
| X | 23542271 | X | 21976800..21976840 | 1953..1993 | 190 | 97.6 | Plus |
| X | 23542271 | X | 10101864..10101904 | 1993..1953 | 190 | 97.6 | Minus |
| X | 23542271 | X | 22050753..22050793 | 1953..1993 | 190 | 97.6 | Plus |
| X | 23542271 | X | 23394708..23394748 | 1993..1953 | 190 | 97.6 | Minus |
| 3CEN | 744266 | 3CEN | 56984..57024 | 1993..1953 | 190 | 97.6 | Minus |
| 3CEN | 744266 | 3CEN | 267061..267101 | 1993..1953 | 190 | 97.6 | Minus |
| 3CEN | 744266 | 3CEN | 541325..541377 | 1993..1941 | 190 | 90.6 | Minus |
| U | 3151297 | U | 34407..34458 | 1992..1941 | 185 | 90.4 | Minus |
| U | 3151297 | U | 39253..39304 | 1992..1941 | 185 | 90.4 | Minus |
Blast to na_te.dros performed 2014-11-28 02:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1360 | 3409 | 1360 1360 3409bp | 3285..3359 | 1917..1993 | 217 | 80.8 | Plus |
BS05069.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:10 Download gff for
BS05069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-RD | 1057..3028 | 22..1993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:58 Download gff for
BS05069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-RD | 1061..3032 | 22..1993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:09 Download gff for
BS05069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-RD | 1057..3028 | 22..1993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:14 Download gff for
BS05069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-RD | 1061..3032 | 22..1993 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:14 Download gff for
BS05069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 134534..134964 | 22..452 | 100 | -> | Plus |
| 4 | 136879..137167 | 453..741 | 100 | -> | Plus |
| 4 | 137223..137332 | 742..851 | 100 | -> | Plus |
| 4 | 137391..137752 | 852..1213 | 100 | -> | Plus |
| 4 | 137807..138310 | 1214..1717 | 100 | -> | Plus |
| 4 | 138374..138574 | 1718..1918 | 100 | -> | Plus |
| 4 | 139822..139896 | 1919..1993 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:58 Download gff for
BS05069.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 155160..155590 | 22..452 | 100 | -> | Plus |
| arm_4 | 157505..157793 | 453..741 | 100 | -> | Plus |
| arm_4 | 157849..157958 | 742..851 | 100 | -> | Plus |
| arm_4 | 158017..158378 | 852..1213 | 100 | -> | Plus |
| arm_4 | 158433..158936 | 1214..1717 | 100 | -> | Plus |
| arm_4 | 159000..159200 | 1718..1918 | 100 | -> | Plus |
| arm_4 | 160448..160522 | 1919..1993 | 100 | | Plus |
BS05069.3prime Sequence
934 bp (829 high quality bases) assembled on 2005-12-02
> BS05069.3prime
ATGGTCTAGAAAGCTTCTATGCAGACACTTTTTTGGTGACGGCCAAAATT
GCTCTCTCTCTCCGCTCGCGTAAAATGGAGTACTTTAAAATCTTGTCAAA
GCAACAACAATTTATGCTTCCTGCCACATTTATAGACCTAGGAGATATGC
AAAATATTTCACTAGTCTTTAGCCGCTTTTGTGCATAAAATCGACCGACT
GTCATTGCCGCTGGAAGTGCAGGTGGGACTACAATTGTGATAAGGTCAAG
TGATTCAACTGCTATTTTCACAGGATCCGTTCCACGCAAGATTTTAGTTA
CAAGCGTATAAATAAATCCTACACATGCTATTATGGCCAGAAACTGGATA
AATTTGTACGAATCTTGTTCAAACTTGTAGTCCACAGGGGGGGGATAAAG
AATAGAACGTATAAGTTCTCCTTTTGCCGTTATGTTTCCAGTGTTTATTA
CAAATGCTAATACTTTTTTGGAGCCAATATAACGAGTCTGAATAACCTTT
GTGCCACAAAAAAGTGTATGTCTGGCATGCTCTGTTTTATCAAAAATCAT
GTCACGTTTCGACGGTAGAGGAGTTTTGGTCACTGGCACACTTTCACCAG
TAAGCATAGACTCATCTAGAATGCAGTTTCCTGATATTAAGATTGCATCG
CAATGCAGCGTACACCCTGATGAGGGTATTTCAATGATGTCCCCAGGTAC
TATCGCTCGCGTTGGAAGCTCTTTAGACAGTCCTTTATGATCAACAACCC
AAGCATTACCAGTGTTATATACTGTTTTTTGGAGCACATCCTGATTCTTT
TTCGTTTGTAAAACAGACACTGTTATACCAAAAACTGACATCAAGAGTAT
TACGCAAGCATAGTAATAGTAATCATATGTAAACCAAAGAATTACAGAAA
ATAATTGAAAAACGTAAAAAGGATTAAGTACTTC
BS05069.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32000-PE | 1788 | CG32000-RE | 871..1788 | 934..17 | 4590 | 100 | Minus |
| CG32000-PF | 1566 | CG32000-RF | 649..1566 | 934..17 | 4590 | 100 | Minus |
| CG32000-PD | 1977 | CG32000-RD | 1060..1977 | 934..17 | 4590 | 100 | Minus |
| CG32000-PC | 1494 | CG32000-RC | 577..1494 | 934..17 | 4590 | 100 | Minus |
| CG32000-PG | 4167 | CG32000-RG | 871..1714 | 934..91 | 4220 | 100 | Minus |
| CG32000-PA | 3945 | CG32000-RA | 649..1492 | 934..91 | 4220 | 100 | Minus |
| CG32000-PB | 3945 | CG32000-RB | 649..1492 | 934..91 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32000-RC | 2238 | CG32000-RC | 1134..2051 | 934..17 | 4590 | 100 | Minus |
| CG32000-RD | 3219 | CG32000-RD | 2115..3032 | 934..17 | 4590 | 100 | Minus |
| CG32000-RF | 2234 | CG32000-RF | 1130..2047 | 934..17 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 137805..138310 | 798..293 | 2530 | 100 | Minus |
| 4 | 1348131 | 4 | 138374..138574 | 292..92 | 1005 | 100 | Minus |
| 4 | 1348131 | 4 | 137615..137752 | 934..797 | 690 | 100 | Minus |
| 4 | 1348131 | 4 | 139820..139896 | 93..17 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 4324087..4324132 | 62..17 | 200 | 95.7 | Minus |
| 4 | 1348131 | 4 | 1275685..1275729 | 17..61 | 195 | 95.6 | Plus |
| 2R | 25286936 | 2R | 6463112..6463156 | 17..61 | 195 | 95.6 | Plus |
| 3R | 32079331 | 3R | 2115916..2115960 | 17..61 | 195 | 95.6 | Plus |
| 4 | 1348131 | 4 | 35203..35243 | 57..17 | 190 | 97.6 | Minus |
| 4 | 1348131 | 4 | 208728..208768 | 17..57 | 190 | 97.6 | Plus |
| 4 | 1348131 | 4 | 789015..789055 | 17..57 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 320273..320313 | 57..17 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 553878..553918 | 57..17 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 603240..603280 | 57..17 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 1890845..1890885 | 17..57 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 2806383..2806423 | 57..17 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 2842070..2842110 | 17..57 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 2905990..2906030 | 57..17 | 190 | 97.6 | Minus |
| 2R | 25286936 | 2R | 3062166..3062206 | 17..57 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 3120166..3120206 | 17..57 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 5530054..5530094 | 17..57 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 5630761..5630801 | 17..57 | 190 | 97.6 | Plus |
| 2R | 25286936 | 2R | 8566890..8566930 | 57..17 | 190 | 97.6 | Minus |
Blast to na_te.dros performed 2015-02-06 13:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1360 | 3409 | 1360 1360 3409bp | 3285..3359 | 93..17 | 217 | 80.8 | Minus |
BS05069.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:11 Download gff for
BS05069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-PC | 577..1494 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:32 Download gff for
BS05069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-PF | 649..1566 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:51:35 Download gff for
BS05069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-RF | 1130..2047 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:58:38 Download gff for
BS05069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-RF | 1130..2047 | 17..934 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:58:38 Download gff for
BS05069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 137615..137752 | 797..934 | 100 | -> | Minus |
| 4 | 137807..138310 | 293..796 | 100 | -> | Minus |
| 4 | 138374..138574 | 92..292 | 100 | -> | Minus |
| 4 | 139822..139896 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:51:35 Download gff for
BS05069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 159000..159200 | 92..292 | 100 | -> | Minus |
| arm_4 | 160448..160522 | 17..91 | 100 | | Minus |
| arm_4 | 158241..158378 | 797..934 | 100 | -> | Minus |
| arm_4 | 158433..158936 | 293..796 | 100 | -> | Minus |
BS05069.5prime Sequence
888 bp (749 high quality bases) assembled on 2005-12-02
> BS05069.5prime
GAAGTTATCAGTCGACATGTTCGCAAGTCAGAGCAAGGCTTGTGATTCTC
CGAGTGAGACTGTGCACCTACAGTCTTTACCAAATCATATTGAAGATCTA
AAATTTAGAAATTCTGATGTTGAAACGGATGATGATCTTCACTTCCCTGG
AATTGCAGCTAAAAATAAAATCTTGAAGCTTAGCTGGTGGCATTCTCCTG
TTGATATGCATTATGTAGCGACAGAATCAGTGCAACCAAAAAAAAGTGAT
AAAGTACCGAGCAATAAAATTAAAAAAGTTGAGAACAATAATACTTTAGT
TAATGGTTGTAGTAAAACTTCAGCAAGATCTGTTCCATTACTCAAATATA
ATCGTCCAGACCAGGATGGGGACAGCGAAGAAAACATAACAAGCGTTCTT
GAGCCAAACGTTGATGAAATCTATTCTAAAGACTCAGAACGGCTTGTGGA
TGATTCAAAACCATGTATTGGACTATTAAATCCAGATCAGGAGGATCAAA
TGAAAGTATGCGGTTATCGACGTTCTCTTATGCGAACTGGTTTTTGTTGG
GCATGCATCTTCTTAACTGGAGGTCTGTTGCGCCTCGTGTTACATTGGTG
GCGTCATTTATATTTATATGCCACTTGCTCTCAATGTTCATTGGAGGAGG
CAGAACAGGTTTTGGTAACAGAGGATTATCAAGGAAAGCACAAAATGTAC
CATGTAAAGCAAATTCAAGTCCTAACGTCGAGCAACCTTAAGACACTTTT
GGAAAAGGAACAGCAATCCATAGAAAGAACTCATATAGAATGCGATCATG
TAGAAAACGTCCTTCAACTGTCAGTTCATTTTACCTCGGCCCAATTCAAA
AAATGCTCATCAATACGAATTTTTCGCTGCAAGCATTT
BS05069.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32000-PD | 1977 | CG32000-RD | 1..869 | 17..885 | 4345 | 100 | Plus |
| CG32000-PE | 1788 | CG32000-RE | 1..680 | 206..885 | 3400 | 100 | Plus |
| CG32000-PG | 4167 | CG32000-RG | 1..680 | 206..885 | 3400 | 100 | Plus |
| CG32000-PF | 1566 | CG32000-RF | 25..458 | 452..885 | 2170 | 100 | Plus |
| CG32000-PA | 3945 | CG32000-RA | 25..458 | 452..885 | 2170 | 100 | Plus |
| CG32000-PB | 3945 | CG32000-RB | 25..458 | 452..885 | 2170 | 100 | Plus |
| CG32000-PC | 1494 | CG32000-RC | 1..386 | 500..885 | 1930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32000-RH | 5743 | CG32000-RH | 1060..1928 | 17..885 | 4345 | 100 | Plus |
| CG32000-RD | 3219 | CG32000-RD | 1056..1924 | 17..885 | 4345 | 100 | Plus |
| CG32000-RG | 4782 | CG32000-RG | 234..967 | 151..885 | 3650 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 134529..134964 | 17..452 | 2180 | 100 | Plus |
| 4 | 1348131 | 4 | 136878..137168 | 452..742 | 1455 | 100 | Plus |
| 4 | 1348131 | 4 | 137223..137332 | 742..851 | 550 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 1792..1898 | 225..329 | 115 | 58.9 | Plus |
BS05069.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:12 Download gff for
BS05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-PD | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:34 Download gff for
BS05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-PD | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:06 Download gff for
BS05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-RD | 1050..1927 | 8..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:54 Download gff for
BS05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32000-RD | 1050..1927 | 8..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:54 Download gff for
BS05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 134523..134964 | 8..452 | 99 | -> | Plus |
| 4 | 136879..137167 | 453..741 | 100 | -> | Plus |
| 4 | 137223..137332 | 742..851 | 100 | -> | Plus |
| 4 | 137391..137427 | 852..888 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:06 Download gff for
BS05069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 155149..155590 | 8..452 | 99 | -> | Plus |
| arm_4 | 157505..157793 | 453..741 | 100 | -> | Plus |
| arm_4 | 157849..157958 | 742..851 | 100 | -> | Plus |
| arm_4 | 158017..158053 | 852..888 | 97 | | Plus |
BS05069.pep Sequence
Translation from 16 to 1992
> BS05069.pep
MFASQSKACDSPSETVHLQSLPNHIEDLKFRNSDVETDDDLHFPGIAAKN
KILKLSWWHSPVDMHYVATESVQPKKSDKVPSNKIKKVENNNTLVNGCSK
TSARSVPLLKYNRPDQDGDSEENITSVLEPNVDEIYSKDSERLVDDSKPC
IGLLNPDQEDQMKVCGYRRSLMRTGFCWACIFLTGGLLRLVLHWWRHLYL
YATCSQCSLEEAEQVLVTEDYQGKHKMYHVKQIQVLTSSNLKTLLEKEQQ
SIERTHIECDHVENVLQLSVHFTSAQFKKCSSIRIFRCKQLVYAWNNNTN
RFQRINGLDLNIPCSYYHQQRGLPVHEQISRRIVFGDNEITVPLRDFKTL
LFLEVLNPFYVFQLFSVILWFTYDYYYYACVILLMSVFGITVSVLQTKKN
QDVLQKTVYNTGNAWVVDHKGLSKELPTRAIVPGDIIEIPSSGCTLHCDA
ILISGNCILDESMLTGESVPVTKTPLPSKRDMIFDKTEHARHTLFCGTKV
IQTRYIGSKKVLAFVINTGNITAKGELIRSILYPPPVDYKFEQDSYKFIQ
FLAIIACVGFIYTLVTKILRGTDPVKIAVESLDLITIVVPPALPAAMTVG
RFYAQKRLKTSEIFCISPRSINVAGSINCCCFDKILKYSILRERRERAIL
AVTKKVSA*
BS05069.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32000-PD | 658 | CG32000-PD | 1..658 | 1..658 | 3459 | 100 | Plus |
| CG32000-PH | 1451 | CG32000-PH | 1..634 | 1..634 | 3350 | 100 | Plus |
| CG32000-PE | 595 | CG32000-PE | 1..595 | 64..658 | 3118 | 100 | Plus |
| CG32000-PG | 1388 | CG32000-PG | 1..571 | 64..634 | 3009 | 100 | Plus |
| CG32000-PF | 521 | CG32000-PF | 9..521 | 146..658 | 2697 | 100 | Plus |
