Clone Sequence Records
BS05072.3prime Sequence
887 bp (847 high quality bases) assembled on 2005-12-02
> BS05072.3prime
ATGGTCTAGAAAGCTTTTACAAGTCGTCGCCCAGGCGATGGATCTCGTCC
AGCATAAAGTCCACATCCGCCTCGTTGACCGCCGCCGACGAGATAATCGA
GCGGAAGAAGTTGGGCCGGCGATCGTCGGGCTGGTAGCCCACCATCAGCG
TTCCCTTCTGCATCATGCGGCCCTTGATGATGGGGCAGATCTTTCCCAGC
TCCACCTCCTTCTTGGCATCGTGTGGCACTCCTCTCAGTCGCTTGGGCAC
ATACCAGAAGGAGACGTTGACGCACTCCGGTTCAAGGATCAGATGGAAGC
GGTCGGACTGCTCGCGAATGCGCTTCAACTGGTACTGGACCAGCTCCATG
AGCCGGTCCTGCTGCTGCTCGAAGCCCTCGGTGCCCTTGGCCCGCCACTG
GAGCCACAGCTTGAAGATGTCGTTGTGGCGGCCGCACTGGATCACCTTGT
CGCCGGTGTCGTAGCTAATGTCATACTGCTTGTCGGTCATGAAGAGATAC
TCCGCCGACATCTGATTGCAGCTGATGAGCAGGCCATCCTCCTTGAAATG
GATCGTGGAGCACTGGAGCAGGGCTCCCATGAGCTTGTGGGGATTCCAGG
TGACCGAATCGGCACGCTCAACACCAGTAAATCTGGGATGACGATGCTTA
CGCGACATCAACAATCCACCGCCCCAAGCAGCATCGATGTGCATCCAGCA
GTTGTACTTCTGGCAGATATCCGCAATCGTGTTGATATCATCGAAGGCAC
CCAGCACAGTGGTGCCGGCAGTGGCGTTCACAAAGAATGGAATGTCACCC
TTGGCCTTGCGCTCCAGGATCAGGCGCTCCAGCTCCGAGGTGATCATCTT
GGCGTGCTCATCCGATGGCACCACAATGCAGTGATCG
BS05072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14994-PB | 1533 | Gad1-RB | 663..1533 | 887..17 | 4330 | 99.8 | Minus |
| CG14994-PA | 1533 | Gad1-RA | 663..1533 | 887..17 | 4330 | 99.8 | Minus |
| CG14994-PC | 1533 | Gad1-RC | 663..1533 | 887..17 | 4330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gad1-RD | 3017 | CG14994-RD | 859..1729 | 887..17 | 4340 | 99.9 | Minus |
| Gad1-RC | 3151 | CG14994-RC | 993..1863 | 887..17 | 4340 | 99.9 | Minus |
| Gad1-RA | 3050 | CG14994-RA | 892..1762 | 887..17 | 4340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4075596..4075940 | 191..535 | 1725 | 100 | Plus |
| 3L | 28110227 | 3L | 4078925..4079130 | 682..887 | 1015 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4075365..4075540 | 17..192 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 4076798..4076878 | 535..615 | 405 | 100 | Plus |
| 3L | 28110227 | 3L | 4078750..4078817 | 615..682 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:10:15 has no hits.
BS05072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:17 Download gff for
BS05072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-PB | 663..1533 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:40 Download gff for
BS05072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14994-PC | 663..1533 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:06 Download gff for
BS05072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RA | 892..1772 | 6..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:40 Download gff for
BS05072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RA | 892..1772 | 6..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:40 Download gff for
BS05072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4075355..4075538 | 6..190 | 97 | <- | Plus |
| 3L | 4075596..4075940 | 191..535 | 100 | <- | Plus |
| 3L | 4076799..4076877 | 536..614 | 100 | <- | Plus |
| 3L | 4078750..4078817 | 615..682 | 100 | <- | Plus |
| 3L | 4078926..4079130 | 683..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:06 Download gff for
BS05072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4075355..4075538 | 6..190 | 97 | <- | Plus |
| arm_3L | 4075596..4075940 | 191..535 | 100 | <- | Plus |
| arm_3L | 4076799..4076877 | 536..614 | 100 | <- | Plus |
| arm_3L | 4078750..4078817 | 615..682 | 100 | <- | Plus |
| arm_3L | 4078926..4079130 | 683..887 | 99 | | Plus |
BS05072.5prime Sequence
911 bp (816 high quality bases) assembled on 2005-11-29
> BS05072.5prime
GAAGTTATCAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCG
AGAGGACGGGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACC
GCTGGACCGGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCT
GGACTTTGTGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCC
ACCATCCCGAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGC
GCCTTGCCACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTA
CCAAGTTAAGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTC
TGGACCTGATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACC
AACATGTTCACCTACGAGATTGCACCAGTTTTCATTCTCATGGAGAATGT
GGTGCTGACCAAGATGCGTGAGATCATTGGCTGGTCGGGTGGCGATTCCA
TTTTGGCACCCGGAGGTTCCATCTCCAATCTGTATGCCTTCCTGGCAGCT
CGTCACAAGATGTTCCCGAACTACAAGGAGCACGGCTCGGTGGGATTGCC
CGGCACACTGGTGATGTTCACCTCGGATCAGTGCCATTACTCGATCAAAT
CATGCGCTGCCGTTTGTGGACTGGGCACCGATCACTGCATTGTGGTGCCA
TCGGATGAGCACGGCAAGATGATCACCTCGGAGCTGGAGCGCCTGATCCT
GGAGCGCAAGGCCAAGGGTGACATTCCATTCTTTGTGAACGCCACTGCCG
GCACCACTGTGCTGGGTGCCTTCGATGATATCAACACGATTGCGGATATC
TGCCAGAAGTACAACTGCTGGATGCACATCGATGCTGCTTGGGGCGGTGA
ATTGTTGATGT
BS05072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14994-PB | 1533 | Gad1-RB | 1..895 | 17..911 | 4450 | 99.8 | Plus |
| CG14994-PA | 1533 | Gad1-RA | 1..895 | 17..911 | 4450 | 99.8 | Plus |
| CG14994-PC | 1533 | Gad1-RC | 1..895 | 17..911 | 4450 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gad1-RD | 3017 | CG14994-RD | 197..1091 | 17..911 | 4460 | 99.9 | Plus |
| Gad1-RC | 3151 | CG14994-RC | 331..1225 | 17..911 | 4460 | 99.9 | Plus |
| Gad1-RA | 3050 | CG14994-RA | 230..1124 | 17..911 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4078925..4079495 | 884..314 | 2855 | 100 | Minus |
| 3L | 28110227 | 3L | 4082402..4082640 | 315..77 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 4084730..4084790 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:31:51 has no hits.
BS05072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:18 Download gff for
BS05072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-PB | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:42 Download gff for
BS05072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14994-PC | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:10 Download gff for
BS05072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RA | 222..1124 | 10..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:03 Download gff for
BS05072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RA | 222..1124 | 10..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:03 Download gff for
BS05072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4078790..4078817 | 884..911 | 96 | <- | Minus |
| 3L | 4078926..4079494 | 315..883 | 100 | <- | Minus |
| 3L | 4082403..4082639 | 78..314 | 100 | <- | Minus |
| 3L | 4084730..4084795 | 10..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:10 Download gff for
BS05072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4078790..4078817 | 884..911 | 96 | <- | Minus |
| arm_3L | 4082403..4082639 | 78..314 | 100 | <- | Minus |
| arm_3L | 4084730..4084795 | 10..77 | 94 | | Minus |
| arm_3L | 4078926..4079494 | 315..883 | 100 | <- | Minus |
BS05072.complete Sequence
1565 bp (1565 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635055
> BS05072.complete
GAAGTTATCAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCG
AGAGGACGGGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACC
GCTGGACCGGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCT
GGACTTTGTGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCC
ACCATCCCGAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGC
GCCTTGCCACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTA
CCAAGTTAAGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTC
TGGACCTGATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACC
AACATGTTCACCTACGAGATTGCACCAGTTTTCATTCTCATGGAGAATGT
GGTGCTGACCAAGATGCGTGAGATCATTGGCTGGTCGGGTGGCGATTCCA
TTTTGGCACCCGGAGGTTCCATCTCCAATCTGTATGCCTTCCTGGCAGCT
CGTCACAAGATGTTCCCGAACTACAAGGAGCACGGCTCGGTGGGATTGCC
CGGCACACTGGTGATGTTCACCTCGGATCAGTGCCATTACTCGATCAAAT
CATGCGCTGCCGTTTGTGGACTGGGCACCGATCACTGCATTGTGGTGCCA
TCGGATGAGCACGGCAAGATGATCACCTCGGAGCTGGAGCGCCTGATCCT
GGAGCGCAAGGCCAAGGGTGACATTCCATTCTTTGTGAACGCCACTGCCG
GCACCACTGTGCTGGGTGCCTTCGATGATATCAACACGATTGCGGATATC
TGCCAGAAGTACAACTGCTGGATGCACATCGATGCTGCTTGGGGCGGTGG
ATTGTTGATGTCGCGTAAGCATCGTCATCCCAGATTTACTGGTGTTGAGC
GTGCCGATTCGGTCACCTGGAATCCCCACAAGCTCATGGGAGCCCTGCTC
CAGTGCTCCACGATCCATTTCAAGGAGGATGGCCTGCTCATCAGCTGCAA
TCAGATGTCGGCGGAGTATCTCTTCATGACCGACAAGCAGTATGACATTA
GCTACGACACCGGCGACAAGGTGATCCAGTGCGGCCGCCACAACGACATC
TTCAAGCTGTGGCTCCAGTGGCGGGCCAAGGGCACCGAGGGCTTCGAGCA
GCAGCAGGACCGGCTCATGGAGCTGGTCCAGTACCAGTTGAAGCGCATTC
GCGAGCAGTCCGACCGCTTCCATCTGATCCTTGAACCGGAGTGCGTCAAC
GTCTCCTTCTGGTATGTGCCCAAGCGACTGAGAGGAGTGCCACACGATGC
CAAGAAGGAGGTGGAGCTGGGAAAGATCTGCCCCATCATCAAGGGCCGCA
TGATGCAGAAGGGAACGCTGATGGTGGGCTACCAGCCCGACGATCGCCGG
CCCAACTTCTTCCGCTCGATTATCTCGTCGGCGGCGGTCAACGAGGCGGA
TGTGGACTTTATGCTGGACGAGATCCATCGCCTGGGCGACGACTTGTAAA
AGCTTTCTAGACCAT
BS05072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gad1-RD | 1533 | CG14994-PD | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| Gad1-RC | 1533 | CG14994-PC | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| Gad1-RA | 1533 | CG14994-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gad1-RD | 3017 | CG14994-RD | 197..1729 | 17..1549 | 7665 | 100 | Plus |
| Gad1-RC | 3151 | CG14994-RC | 331..1863 | 17..1549 | 7665 | 100 | Plus |
| Gad1-RA | 3050 | CG14994-RA | 230..1762 | 17..1549 | 7665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4078925..4079495 | 884..314 | 2855 | 100 | Minus |
| 3L | 28110227 | 3L | 4075596..4075940 | 1375..1031 | 1725 | 100 | Minus |
| 3L | 28110227 | 3L | 4082402..4082640 | 315..77 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 4075365..4075540 | 1549..1374 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 4076798..4076878 | 1031..951 | 405 | 100 | Minus |
| 3L | 28110227 | 3L | 4078750..4078817 | 951..884 | 340 | 100 | Minus |
| 3L | 28110227 | 3L | 4084730..4084790 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:53:49 has no hits.
BS05072.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:00 Download gff for
BS05072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RC | 1..1533 | 17..1549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:19 Download gff for
BS05072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RC | 307..1857 | 10..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:47 Download gff for
BS05072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RA | 230..1760 | 17..1547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:00 Download gff for
BS05072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RC | 307..1857 | 10..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:16 Download gff for
BS05072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gad1-RA | 230..1760 | 17..1547 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:16 Download gff for
BS05072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4075367..4075538 | 1376..1547 | 100 | <- | Minus |
| 3L | 4075596..4075940 | 1031..1375 | 100 | <- | Minus |
| 3L | 4076799..4076877 | 952..1030 | 100 | <- | Minus |
| 3L | 4078750..4078817 | 884..951 | 100 | <- | Minus |
| 3L | 4078926..4079494 | 315..883 | 100 | <- | Minus |
| 3L | 4082403..4082639 | 78..314 | 100 | <- | Minus |
| 3L | 4084730..4084790 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:47 Download gff for
BS05072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4075367..4075538 | 1376..1547 | 100 | <- | Minus |
| arm_3L | 4075596..4075940 | 1031..1375 | 100 | <- | Minus |
| arm_3L | 4076799..4076877 | 952..1030 | 100 | <- | Minus |
| arm_3L | 4078750..4078817 | 884..951 | 100 | <- | Minus |
| arm_3L | 4078926..4079494 | 315..883 | 100 | <- | Minus |
| arm_3L | 4082403..4082639 | 78..314 | 100 | <- | Minus |
| arm_3L | 4084730..4084790 | 17..77 | 100 | | Minus |
BS05072.pep Sequence
Translation from 16 to 1548
> BS05072.pep
MSLNPNGYKLSERTGKLTAYDLMPTTVTAGPETREFLLKVIDVLLDFVKA
TNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQVKTG
HPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKM
REIIGWSGGDSILAPGGSISNLYAFLAARHKMFPNYKEHGSVGLPGTLVM
FTSDQCHYSIKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAK
GDIPFFVNATAGTTVLGAFDDINTIADICQKYNCWMHIDAAWGGGLLMSR
KHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFKEDGLLISCNQMSAE
YLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRL
MELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVE
LGKICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFML
DEIHRLGDDL*
BS05072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gad1-PD | 510 | CG14994-PD | 1..510 | 1..510 | 2718 | 100 | Plus |
| Gad1-PC | 510 | CG14994-PC | 1..510 | 1..510 | 2718 | 100 | Plus |
| Gad1-PA | 510 | CG14994-PA | 1..510 | 1..510 | 2718 | 100 | Plus |
| Gad1-PB | 510 | CG14994-PB | 1..510 | 1..510 | 2718 | 100 | Plus |
| b-PC | 514 | CG7811-PC | 34..514 | 32..510 | 1097 | 43.7 | Plus |
