Clone BS05073 Report

Search the DGRC for BS05073

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:73
Vector:pDNR-Dual
Associated Gene/Transcriptine-RB
Protein status:BS05073.pep: full length peptide match
Sequenced Size:2864

Clone Sequence Records

BS05073.complete Sequence

2864 bp assembled on 2009-12-07

GenBank Submission: KX794085

> BS05073.complete
GAAGTTATCAGTCGACATGGCGGAGAACAAAGACGTCAGCCAGGTGCTAA
ACACCACACCCGACCAGGTGGTCATCAATCGTGCCCCGCCCACCGGACTA
GCGCCCTTGAGGCACAGCCAACTCTCTGATAGCGGAGCGGAGAGCTGCTA
CGAGGGCGATGAGCAGGCACGGCTCATCCGGTCCTCATCGTCGCGGGCGC
ACAAGTTCATCATAATACCGGCCACGCCAGGAACACCGCCGGGAAGCGGT
GCGGTAGCAGGACCACTTCCCTTTCGCCAGACCAGCTCAACCACATCGCT
GGCGGCCATGGCAGCTGCGCTGCACAAACAGTCTCCACTGCGCCATACAT
CGGTGCGAACCAGGCCCAGTTCGGAGGTATTGCAACCGGGCCAGGTGCTC
GCCAATCAGCCAACGGCAGCTGTATCCACCTCCACGGTGACCTTCACCAT
TGACGACTGCAATGAAGAAGGCGATGCCATTCCTGCTGCAGCTTCAGTTC
CAGCTCCCGTGACCATGCCCGCCATCTCACCCACGCCGGCCACCTTGACC
TGCACCACCACCACCACCATGGCCGGTGATTCGGTGGCCGTCTCGCCGCT
CAGCATGGAGCTGAAGTCGCGGTTAGGCAGCCATCACAGCAGCATGCGCT
CCGTAGTCTCAGGTTATCTTCCAGGCCTGAGCGACAGTAGCGGCAATCTG
GTTGGAGGCGTATCGATGGCCACTTCCGGATTACAGGCCCCCAATCCGCT
CTACATGCAACCACAGGCCTCGCTGAGCGGCAGTTCCTATCATTTCCACG
AACTGGCCGGCAACCAGATCTACTCCGATGTGACCTCCGTTCGCTCGCTG
GCCTCCATTGGCATTGGGTCGACGGATGGGCGCAAGCTGGTCATCCGGCG
AGTGCCCACCACCGCCAACGAGCTGTTCGACATGGTCAATCCGCAGACGC
CACCACCCCTGGGGGTGGATGACGATGACAGCTACCTGGACATGTCCGAT
GAGACGGCCCAGCTCAAGCCGCGCCAGCAGCACTGGGCCAATAAGATGCA
ATTCGTCCTGGCCTGCATAGGATACTCGGTGGGTCTGGGCAACGTCTGGC
GTTTTCCGTACATGTGCTACAAGAGTGGCGGTGGTGTTTTTCTAGTACCT
TATTGCATAATACTGTTCATATGCAGCATTCCGCTGCTCTTCATGGAGCT
GTCCGTTGGCCAATACACCGGTCGAGGACCCATTGGAGCACTGGGTCAAC
TGTGTCCTCTGTTCAAGGGAGCCGGACTCGCCAGCGTGGTCGTCTCGTTC
CTCATGTCCACCTACTATAGTGTCATCATAGGCTACTCCATCTACTACTT
CTTTACGTCGTTCAAAACGGAAATGCCCTGGATCGACTGCAACAACAGGT
GGAACACGCCCGATTGCTGGGTGCCACAGCGCAAGGGGATTAATGCCAGT
GCGCCGGACACATCTCGCACTCCATCCGAGGAATTCTTCGAAAACAAGGT
CCTGCAGATCAGCGGTGGCCTGGAGTATCCGGGCATGATGCGCTGGGAGC
TATTTGCCTGCCTGATCTGCGCCTGGCTAATGGTCTACTTCGCCACGTGG
AAGTCGATCAAGTCGTCGGCGAAGGTGCGCTACTTCACGGCCACGTTTCC
GTTCGTGCTGATCATCATCCTGATGGTGCGCGCGGTGACCCTGGATGGAG
CTGCTGAGGGTTTGCGCTTCTTCTTCCGTCCCAAGTGGTCGGAGCTGAAG
AACGCCAATGTGTGGATCAACGCCGCATCCCAGAACTTCAACTCGCTGGG
CATTACATTCGGATCCATGATCTCCTTTGCCAGCTACAACAAGTACAACA
ACAATATCCTGCGAGATACCGTGGCAGTGAGTGCGGTGAATATGATCACC
AGTCTCCTGGTGGGCATCTTTGCCTTCTCCACGCTGGGCAATCTGGCGCT
GGAGCAGAACACCAATGTGAGGGACGTCATCGGTGATGGACCGGGCATGA
TATTCGTGGTGTATCCCCAGGCGATGGCTAAGATGCCGTACGCTCAGCTC
TGGGCGGTCATGTTCTTCTTCATGCTGCTCTGCCTAGGTCTGAACTCGCA
GTTTGCCATTGTGGAGGTTGTGGTCACGTCCATACAGGATGGCTTTCCGC
GGTGGATCAAGCGGCACCTGGGCTATCACGAAATCGTGGTCCTGTTCGTC
TGTGTCATCTCATGTCTCTTCGGGATGCCCAACATCATACAGGGTGGCAT
CTACTACTTCCAGCTAATGGATCACTACGCCGCCTCCGTGACGATCATGT
TTCTGGCCTTCTGTCAAATGATTGCCATTGCCTGGTTCTACGGCACGGGA
AGACTGTCGAAGAACGTCAAGCAAATGACCGGAAAGGCGCCTTCGTTCTA
TCTCAGATCCTGCTGGCTAGTCCTGGGACCCTGCCTCCTCTTTGCCATCT
GGGTATTGAGTCTGATCAACTACCACGAGCCCACCTACCACAATGGACGC
TATACCTATCCGGACTGGGCCTACGGAATAGGCTGGATGTTCGCTTCATT
CTCGCTGATCTGCATACCTGGATATGCGGTTATCAACTTCCTGCGCTCCA
GTGGAGATACCTTTTGGGAACGCATCCGGAACACGCTGAGACCCAACATC
TACGAGTGCAAGATTTGCGGGGAACACCACTGCGAACACGACTATCCGGA
GCAGGAGCAGTTTATGCTGGCCCAGGAAATGGCCACAGTGTACAAGCCCA
CCAACCCACACCTGCTCAATCTCGGCCAGAAGTGCGGCTACAACGCCATG
CAAGCCTCACCCTCACATGCGGAGGCAGGAGGACCATGTGGCCAGTAGAA
GCTTTCTAGACCAT

BS05073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
ine-RF 2832 CG15444-PF 1..2832 17..2848 14160 100 Plus
ine-RE 2832 CG15444-PE 1..2832 17..2848 14160 100 Plus
ine-RB 2832 CG15444-PB 1..2832 17..2848 14160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
ine-RF 3436 CG15444-RF 501..3332 17..2848 14160 100 Plus
ine-RE 3458 CG15444-RE 523..3354 17..2848 14160 100 Plus
ine-RB 3664 CG15444-RB 699..3530 17..2848 14160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4468666..4469618 2444..1492 4765 100 Minus
2L 23513712 2L 4474329..4474977 665..17 3245 100 Minus
2L 23513712 2L 4473685..4473979 954..660 1475 100 Minus
2L 23513712 2L 4468134..4468361 2848..2621 1140 100 Minus
2L 23513712 2L 4471978..4472158 1135..955 905 100 Minus
2L 23513712 2L 4468425..4468601 2620..2444 885 100 Minus
2L 23513712 2L 4470993..4471129 1269..1133 685 100 Minus
2L 23513712 2L 4469832..4469966 1402..1268 675 100 Minus
2L 23513712 2L 4469675..4469770 1491..1396 480 100 Minus
2R 25286936 2R 24407017..24407126 1854..1745 190 78.2 Minus
Blast to na_te.dros performed on 2014-11-27 10:22:28 has no hits.

BS05073.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:24 Download gff for BS05073.complete
Subject Subject Range Query Range Percent Splice Strand
ine-RB 701..3532 17..2848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:57 Download gff for BS05073.complete
Subject Subject Range Query Range Percent Splice Strand
ine-RB 699..3530 17..2848 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:06 Download gff for BS05073.complete
Subject Subject Range Query Range Percent Splice Strand
ine-RB 701..3532 17..2848 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:08 Download gff for BS05073.complete
Subject Subject Range Query Range Percent Splice Strand
ine-RB 699..3530 17..2848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:08 Download gff for BS05073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4468134..4468361 2621..2848 100 <- Minus
2L 4468425..4468601 2444..2620 100 <- Minus
2L 4468667..4469618 1492..2443 100 <- Minus
2L 4469675..4469767 1399..1491 100 <- Minus
2L 4469836..4469965 1269..1398 100 <- Minus
2L 4470994..4471128 1134..1268 100 <- Minus
2L 4471980..4472158 955..1133 100 <- Minus
2L 4473685..4473976 663..954 100 <- Minus
2L 4474332..4474977 17..662 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:57 Download gff for BS05073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4468134..4468361 2621..2848 100 <- Minus
arm_2L 4468425..4468601 2444..2620 100 <- Minus
arm_2L 4468667..4469618 1492..2443 100 <- Minus
arm_2L 4469675..4469767 1399..1491 100 <- Minus
arm_2L 4469836..4469965 1269..1398 100 <- Minus
arm_2L 4470994..4471128 1134..1268 100 <- Minus
arm_2L 4471980..4472158 955..1133 100 <- Minus
arm_2L 4473685..4473976 663..954 100 <- Minus
arm_2L 4474332..4474977 17..662 100   Minus

BS05073.3prime Sequence

948 bp (751 high quality bases) assembled on 2005-12-02

> BS05073.3prime
ATGGTCTAGAAAGCTTCTACTGGCCACATGGTCCTCCTGCCTCCGCATGT
GAGGGTGAGGCTTGCATGGCGTTGTAGCCGCACTTCTGGCCGAGATTGAG
CAGGTGTGGGTTGGTGGGCTTGTACACTGTGGCCATTTCCTGGGCCAGCA
TAAACTGCTCCTGCTCCGGATAGTCGTGTTCGCAGTGGTGTTCCCCGCAA
ATCTTGCACTCGTAGATGTTGGGTCTCAGCGTGTTCCGGATGCGTTCCCA
AAAGGTATCTCCACTGGAGCGCAGGAAGTTGATAACCGCATATCCAGGTA
TGCAGATCAGCGAGAATGAAGCGAACATCCAGCCTATTCCGTAGGCCCAG
TCCGGATAGGTATAGCGTCCATTGTGGTAGGTGGGCTCGTGGTAGTTGAT
CAGACTCAATACCCAGATGGCAAAGAGGAGGCAGGGTCCCAGGACTAGCC
AGCAGGATCTGAGATAGAACGAAGGCGCCTTTCCGGTCATTTGCTTGACG
TTCTTCGACAGTCTTCCCGTGCCGTAGAACCAGGCAATGGCAATCATTTG
ACAGAAGGCCAGAAACATGATCGTCACGGAGGCGGCGTAGTGATCCATTA
GCTGGAAGTAGTAGATGCCACCCTGTATGATGTTGGGCATCCCGAAGAGA
CATGAGATGACACAGACGAACAGGACCACGATTTCGTGATAGCCCAGGTG
CCGCTTGATCCACCGCGGAAAGCCATCCTGTATGGACGTGACCACAACCT
CCACAATGGCAAACTGCGAGTTCAGACCTAGGCAGAGCAGCATGAAGAAG
AACATGACCGCCCAGAGCTGAGCGTACGGCATCTTAGCCATCGCCTGGGG
ATACACCACGAATATCATGCCCGGTCCATCACCGATGACGTCCCTCACAT
TGGTGTTCTGCTCCAGCGCCAGATTGCCCAGCGTGGAGAAGGCAAAGA

BS05073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15444-PC 2832 ine-RC 1901..2832 948..17 4660 100 Minus
CG15444-PD 2832 ine-RD 1901..2832 948..17 4660 100 Minus
CG15444-PB 2832 ine-RB 1901..2832 948..17 4660 100 Minus
CG15444-PA 1977 ine-RA 1046..1977 948..17 4660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
ine-RF 3436 CG15444-RF 2401..3332 948..17 4660 100 Minus
ine-RE 3458 CG15444-RE 2423..3354 948..17 4660 100 Minus
ine-RA 2272 CG15444-RA 1207..2138 948..17 4660 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4468666..4469193 421..948 2640 100 Plus
2L 23513712 2L 4468134..4468361 17..244 1140 100 Plus
2L 23513712 2L 4468425..4468601 245..421 885 100 Plus
Blast to na_te.dros performed 2015-02-03 12:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 2134..2194 653..714 109 66.1 Plus

BS05073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:19 Download gff for BS05073.3prime
Subject Subject Range Query Range Percent Splice Strand
ine-PD 1902..2832 17..947 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:43 Download gff for BS05073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15444-PA 1047..1977 17..947 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:52:35 Download gff for BS05073.3prime
Subject Subject Range Query Range Percent Splice Strand
ine-RA 1208..2143 11..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:43:27 Download gff for BS05073.3prime
Subject Subject Range Query Range Percent Splice Strand
ine-RA 1208..2143 11..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:43:27 Download gff for BS05073.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4468129..4468361 11..244 98 <- Plus
2L 4468425..4468601 245..421 100 <- Plus
2L 4468667..4469192 422..947 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:52:35 Download gff for BS05073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4468129..4468361 11..244 98 <- Plus
arm_2L 4468425..4468601 245..421 100 <- Plus
arm_2L 4468667..4469192 422..947 100   Plus

BS05073.5prime Sequence

896 bp (854 high quality bases) assembled on 2005-12-02

> BS05073.5prime
GAAGTTATCAGTCGACATGGCGGAGAACAAAGACGTCAGCCAGGTGCTAA
ACACCACACCCGACCAGGTGGTCATCAATCGTGCCCCGCCCACCGGACTA
GCGCCCTTGAGGCACAGCCAACTCTCTGATAGCGGAGCGGAGAGCTGCTA
CGAGGGCGATGAGCAGGCACGGCTCATCCGGTCCTCATCGTCGCGGGCGC
ACAAGTTCATCATAATACCGGCCACGCCAGGAACACCGCCGGGAAGCGGT
GCGGTAGCAGGACCACTTCCCTTTCGCCAGACCAGCTCAACCACATCGCT
GGCGGCCATGGCAGCTGCGCTGCACAAACAGTCTCCACTGCGCCATACAT
CGGTGCGAACCAGGCCCAGTTCGGAGGTATTGCAACCGGGCCAGGTGCTC
GCCAATCAGCCAACGGCAGCTGTATCCACCTCCACGGTGACCTTCACCAT
TGACGACTGCAATGAAGAAGGCGATGCCATTCCTGCTGCAGCTTCAGTTC
CAGCTCCCGTGACCATGCCCGCCATCTCACCCACGCCGGCCACCTTGACC
TGCACCACCACCACCACCATGGCCGGTGATTCGGTGGCCGTCTCGCCGCT
CAGCATGGAGCTGAAGTCGCGGTTAGGCAGCCATCACAGCAGCATGCGCT
CCGTAGTCTCAGGTTATCTTCCAGGCCTGAGCGACAGTAGCGGCAATCTG
GTTGGAGGCGTATCGATGGCCACTTCCGGATTACAGGCCCCCAATCCGCT
CTACATGCAACCACAGGCCTCGCTGAGCGGCAGTTCCTATCATTTCCACG
AACTGGCCGGCAACCAGATCTACTCCGATGTGACCTCCGTTCGCTCGCTG
GCCTCCATTGGCATTGGGTCGACGGATGGGCGCAAGCTGGGTCATC

BS05073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15444-PC 2832 ine-RC 1..874 17..890 4370 100 Plus
CG15444-PD 2832 ine-RD 1..874 17..890 4370 100 Plus
CG15444-PB 2832 ine-RB 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
ine-RF 3436 CG15444-RF 501..1379 17..896 4375 99.9 Plus
ine-RE 3458 CG15444-RE 523..1401 17..896 4375 99.9 Plus
ine-RB 3664 CG15444-RB 699..1577 17..896 4375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4474329..4474977 665..17 3245 100 Minus
2L 23513712 2L 4473749..4473979 890..660 1155 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:28:00 has no hits.

BS05073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:21 Download gff for BS05073.5prime
Subject Subject Range Query Range Percent Splice Strand
ine-PD 1..879 17..896 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:26:44 Download gff for BS05073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15444-PB 1..879 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:44:47 Download gff for BS05073.5prime
Subject Subject Range Query Range Percent Splice Strand
ine-RB 694..1577 12..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:29:38 Download gff for BS05073.5prime
Subject Subject Range Query Range Percent Splice Strand
ine-RB 694..1577 12..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:29:38 Download gff for BS05073.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4473744..4473976 663..896 99 <- Minus
2L 4474332..4474982 12..662 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:44:47 Download gff for BS05073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4473744..4473976 663..896 99 <- Minus
arm_2L 4474332..4474982 12..662 99   Minus

BS05073.pep Sequence

Translation from 16 to 2847

> BS05073.pep
MAENKDVSQVLNTTPDQVVINRAPPTGLAPLRHSQLSDSGAESCYEGDEQ
ARLIRSSSSRAHKFIIIPATPGTPPGSGAVAGPLPFRQTSSTTSLAAMAA
ALHKQSPLRHTSVRTRPSSEVLQPGQVLANQPTAAVSTSTVTFTIDDCNE
EGDAIPAAASVPAPVTMPAISPTPATLTCTTTTTMAGDSVAVSPLSMELK
SRLGSHHSSMRSVVSGYLPGLSDSSGNLVGGVSMATSGLQAPNPLYMQPQ
ASLSGSSYHFHELAGNQIYSDVTSVRSLASIGIGSTDGRKLVIRRVPTTA
NELFDMVNPQTPPPLGVDDDDSYLDMSDETAQLKPRQQHWANKMQFVLAC
IGYSVGLGNVWRFPYMCYKSGGGVFLVPYCIILFICSIPLLFMELSVGQY
TGRGPIGALGQLCPLFKGAGLASVVVSFLMSTYYSVIIGYSIYYFFTSFK
TEMPWIDCNNRWNTPDCWVPQRKGINASAPDTSRTPSEEFFENKVLQISG
GLEYPGMMRWELFACLICAWLMVYFATWKSIKSSAKVRYFTATFPFVLII
ILMVRAVTLDGAAEGLRFFFRPKWSELKNANVWINAASQNFNSLGITFGS
MISFASYNKYNNNILRDTVAVSAVNMITSLLVGIFAFSTLGNLALEQNTN
VRDVIGDGPGMIFVVYPQAMAKMPYAQLWAVMFFFMLLCLGLNSQFAIVE
VVVTSIQDGFPRWIKRHLGYHEIVVLFVCVISCLFGMPNIIQGGIYYFQL
MDHYAASVTIMFLAFCQMIAIAWFYGTGRLSKNVKQMTGKAPSFYLRSCW
LVLGPCLLFAIWVLSLINYHEPTYHNGRYTYPDWAYGIGWMFASFSLICI
PGYAVINFLRSSGDTFWERIRNTLRPNIYECKICGEHHCEHDYPEQEQFM
LAQEMATVYKPTNPHLLNLGQKCGYNAMQASPSHAEAGGPCGQ*

BS05073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
ine-PF 943 CG15444-PF 1..943 1..943 4998 100 Plus
ine-PE 943 CG15444-PE 1..943 1..943 4998 100 Plus
ine-PB 943 CG15444-PB 1..943 1..943 4998 100 Plus
ine-PC 943 CG15444-PC 1..943 1..943 4998 100 Plus
ine-PA 658 CG15444-PA 15..658 300..943 3417 98.1 Plus