Clone Sequence Records
BS05082.3prime Sequence
927 bp (797 high quality bases) assembled on 2005-12-02
> BS05082.3prime
ATGGTCTAGAAAGCTTTTATTGTTTCCTCCAATCGCGTCCAGAGCTGCGC
CTTTGATGCTTAACAGATCCCCCATTGCTGCTACCGCCACTTCCGTTGAC
TACGCCAGATACGCCTCCTCCGTTGCTGTGATCCTGGGCGGGATATCGGG
TTACAACGTCGTCAATTAGCTCCAGAATGCCAATCTTGAACTTGCGACGT
TGCTGTGGAGTGAGAGTCGCCAGATCTGGGAGAATGCTGCGGAAGAACTC
CATGTCCGCCACTTCCGACGAACTCAGTCCGCCGTAAATACTTCCTGCAT
TCGTCATCGTGCTGGTGGCCTCGCATTCCGTCTTGATTCTTTTCGTGCTC
CCCGGTTCGTAGGATGCTGGGTGATGATCCATGGACAATGTCAAAGGATG
TGGATGCGAGTGCGGATGGTAGTGCAGAGGCGGTGGTGTGCCATGTCCAC
CATCGCTGTAGATGAGTTGCGAGCCCGTCTCGGCCAGCTGCACATCTGGA
ATGAAGTTTTTCATGCTATCCGCACTAGCGGTATCGCTTCTGGCCGGTGA
ATTGCCTCCGCCTCCTTGAAGGGCAGAACTGCGAGTGGGCGTGGACGAAG
TACGATTCATACCCAGGGTGTTGGTAACCGCGGGATCAAAGGCGTCGATG
GTCTCCTCATCGTCCTTCTCCGATATCGAGTACTTCATCTCCAAGACCTC
CATACTCTCACCATTATGGACGTCGTTGTTATTATTATTATTATTGATGC
TAGTGTTGGCGCAGTACTTGTGCTCCTCGGTCGCATGGAGTGCTGGATGC
AGGAGAAATGGTTGATGCTGCAAATGCTGCTGGGACATCTGGTACAGAGT
GGCCAGACTGTTGTTCCCCTCCAAAGAGTTACGGCTGGACTTCANGAAGG
GCAGCAGGAACGCCATGTGCTCGGTCA
BS05082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-PA | 1308 | CG3838-RA | 398..1308 | 927..17 | 4536 | 99.8 | Minus |
CG3838-PB | 1308 | CG3838-RB | 398..1308 | 927..17 | 4536 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-RB | 3091 | CG3838-RB | 1574..2485 | 927..16 | 4549 | 99.9 | Minus |
CG3838-RA | 2256 | CG3838-RA | 739..1650 | 927..16 | 4549 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9572055..9572966 | 927..16 | 4549 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:21:35 has no hits.
BS05082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:34 Download gff for
BS05082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-PA | 399..1308 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:04 Download gff for
BS05082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-PB | 399..1308 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:03:45 Download gff for
BS05082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 740..1650 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:15:33 Download gff for
BS05082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 740..1650 | 16..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:15:33 Download gff for
BS05082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9572056..9572966 | 16..926 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:03:45 Download gff for
BS05082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9572056..9572966 | 16..926 | 99 | | Minus |
BS05082.5prime Sequence
924 bp (724 high quality bases) assembled on 2005-11-29
> BS05082.5prime
GAAGTTATCAGTCGACATGACCACCTCAACCCGCAGCAGCAGCAACAACC
ACAGCAGCGAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAAC
CACCACAGTCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGG
ATCCACCAACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCG
TCAACCTGGTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAG
TACCGCAACAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGA
GACAAGAGAAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGG
CCTGCCTATCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCAC
AAGCCATACTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAA
GTCCAGCCGTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACC
AGATGTCCCAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCA
CTCCATGCGACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAA
TAATAATAATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGG
AGATGAAGTACTCGATATCGGAGAAGGACGATGAGGAGACCATCGACGCC
TTTGATCCCGCGGTTACCAACACCCTGGGTATGAATCGTACTTCGTCCAC
GCCCACTCGCAGTTCTGCCCTTCAAGGAGGCGGAGGCAATTCACCGGCCA
GAAGCGATACCGCTAGTGCGGATAGCATGAAAAACTTCATTCCAGATGTG
CAGCTGGGCGAGACGGGCTCGCAACTCATCTACAGCGATGGTGGACATGG
CACACCACCGCCTCTGCACTACCA
BS05082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-PA | 1308 | CG3838-RA | 1..908 | 17..924 | 4515 | 99.8 | Plus |
CG3838-PB | 1308 | CG3838-RB | 1..908 | 17..924 | 4515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-RB | 3091 | CG3838-RB | 1177..2084 | 17..924 | 4525 | 99.9 | Plus |
CG3838-RA | 2256 | CG3838-RA | 342..1249 | 17..924 | 4525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9571955..9572565 | 314..924 | 3040 | 99.8 | Plus |
2L | 23513712 | 2L | 9571509..9571754 | 17..262 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 9571838..9571894 | 258..314 | 285 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 23:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6836 | 20..141 | 156 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6898 | 34..137 | 153 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..7027 | 21..237 | 150 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2431 | 16..107 | 143 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6854 | 34..141 | 143 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2527 | 10..107 | 140 | 63.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1141 | 24..108 | 135 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2887 | 3..107 | 129 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1585 | 12..63 | 122 | 73.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6914 | 34..141 | 120 | 60.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7937..7985 | 7..58 | 117 | 75 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9381..9429 | 7..58 | 117 | 75 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 131..177 | 13..59 | 109 | 70.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9161..9207 | 13..59 | 109 | 70.2 | Plus |
BS05082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:36 Download gff for
BS05082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:05 Download gff for
BS05082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-PB | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:59 Download gff for
BS05082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 334..1248 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:07 Download gff for
BS05082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 334..1248 | 9..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:07 Download gff for
BS05082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9571501..9571753 | 9..261 | 98 | -> | Plus |
2L | 9571842..9571894 | 262..314 | 100 | -> | Plus |
2L | 9571956..9572564 | 315..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:59 Download gff for
BS05082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9571501..9571753 | 9..261 | 98 | -> | Plus |
arm_2L | 9571842..9571894 | 262..314 | 100 | -> | Plus |
arm_2L | 9571956..9572564 | 315..923 | 99 | | Plus |
BS05082.complete Sequence
1340 bp (1340 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635056
> BS05082.complete
GAAGTTATCAGTCGACATGACCACCTCAACCCGCAGCAGCAGCAACAACC
ACAGCAGCGAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAAC
CACCACAGTCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGG
ATCCACCAACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCG
TCAACCTGGTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAG
TACCGCAACAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGA
GACAAGAGAAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGG
CCTGCCTATCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCAC
AAGCCATACTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAA
GTCCAGCCGTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACC
AGATGTCCCAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCA
CTCCATGCGACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAA
TAATAATAATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGG
AGATGAAGTACTCGATATCGGAGAAGGACGATGAGGAGACCATCGACGCC
TTTGATCCCGCGGTTACCAACACCCTGGGTATGAATCGTACTTCGTCCAC
GCCCACTCGCAGTTCTGCCCTTCAAGGAGGCGGAGGCAATTCACCGGCCA
GAAGCGATACCGCTAGTGCGGATAGCATGAAAAACTTCATTCCAGATGTG
CAGCTGGCCGAGACGGGCTCGCAACTCATCTACAGCGATGGTGGACATGG
CACACCACCGCCTCTGCACTACCATCCGCACTCGCATCCACATCCTTTGA
CATTGTCCATGGATCATCACCCAGCATCCTACGAACCGGGGAGCACGAAA
AGAATCAAGACGGAATGCGAGGCCACCAGCACGATGACGAATGCAGGAAG
TATTTACGGCGGACTGAGTTCGTCGGAAGTGGCGGACATGGAGTTCTTCC
GCAGCATTCTCCCAGATCTGGCGACTCTCACTCCACAGCAACGTCGCAAG
TTCAAGATTGGCATTCTGGAGCTAATTGACGACGTTGTAACCCGATATCC
CGCCCAGGATCACAGCAACGGAGGAGGCGTATCTGGCGTAGTCAACGGAA
GTGGCGGTAGCAGCAATGGGGGATCTGTTAAGCATCAAAGGCGCAGCTCT
GGACGCGATTGGAGGAAACAATAAAAGCTTTCTAGACCAT
BS05082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-RB | 1308 | CG3838-PB | 1..1308 | 17..1324 | 6540 | 100 | Plus |
CG3838-RA | 1308 | CG3838-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-RB | 3091 | CG3838-RB | 1177..2485 | 17..1325 | 6545 | 100 | Plus |
CG3838-RA | 2256 | CG3838-RA | 342..1650 | 17..1325 | 6545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9571955..9572966 | 314..1325 | 5060 | 100 | Plus |
2L | 23513712 | 2L | 9571509..9571754 | 17..262 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 9571838..9571894 | 258..314 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 17:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6836 | 20..141 | 156 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6898 | 34..137 | 153 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..7027 | 21..237 | 150 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2431 | 16..107 | 143 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2527 | 10..107 | 140 | 63.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1141 | 24..108 | 135 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2887 | 3..107 | 129 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1585 | 12..63 | 122 | 73.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6914 | 34..141 | 120 | 60.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7937..7985 | 7..58 | 117 | 75 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9381..9429 | 7..58 | 117 | 75 | Plus |
BS05082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:01 Download gff for
BS05082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RB | 1..1308 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:20 Download gff for
BS05082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RB | 1123..2439 | 9..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:13 Download gff for
BS05082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 342..1640 | 17..1315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:02 Download gff for
BS05082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RB | 1123..2439 | 9..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:32 Download gff for
BS05082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 342..1640 | 17..1315 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:32 Download gff for
BS05082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9571509..9571753 | 17..261 | 100 | -> | Plus |
2L | 9571842..9571894 | 262..314 | 100 | -> | Plus |
2L | 9571956..9572956 | 315..1315 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:13 Download gff for
BS05082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9571842..9571894 | 262..314 | 100 | -> | Plus |
arm_2L | 9571509..9571753 | 17..261 | 100 | -> | Plus |
arm_2L | 9571956..9572956 | 315..1315 | 100 | | Plus |
BS05082.pep Sequence
Translation from 16 to 1323
> BS05082.pep
MTTSTRSSSNNHSSEHEERTSNGTTAYNHHSPTGSGSGTAGASIGSTNRV
MQADEDFNIRFVNLVRTHKCLYDKKVPEYRNRDNQEKAWVLISKETRESV
IHCKERWRNLRACLSRYIKQQSGSEPQHKPYYLTEHMAFLLPFLKSSRNS
LEGNNSLATLYQMSQQHLQHQPFLLHPALHATEEHKYCANTSINNNNNNN
DVHNGESMEVLEMKYSISEKDDEETIDAFDPAVTNTLGMNRTSSTPTRSS
ALQGGGGNSPARSDTASADSMKNFIPDVQLAETGSQLIYSDGGHGTPPPL
HYHPHSHPHPLTLSMDHHPASYEPGSTKRIKTECEATSTMTNAGSIYGGL
SSSEVADMEFFRSILPDLATLTPQQRRKFKIGILELIDDVVTRYPAQDHS
NGGGVSGVVNGSGGSSNGGSVKHQRRSSGRDWRKQ*
BS05082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-PB | 435 | CG3838-PB | 1..435 | 1..435 | 2309 | 100 | Plus |
CG3838-PA | 435 | CG3838-PA | 1..435 | 1..435 | 2309 | 100 | Plus |
CG4404-PA | 308 | CG4404-PA | 11..303 | 54..391 | 201 | 23.5 | Plus |
CG3919-PB | 302 | CG3919-PB | 18..96 | 58..140 | 165 | 41 | Plus |
CG3919-PC | 318 | CG3919-PC | 18..96 | 58..140 | 165 | 41 | Plus |