Clone BS05082 Report

Search the DGRC for BS05082

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:50
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG3838-RA
Protein status:BS05082.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05082.3prime Sequence

927 bp (797 high quality bases) assembled on 2005-12-02

> BS05082.3prime
ATGGTCTAGAAAGCTTTTATTGTTTCCTCCAATCGCGTCCAGAGCTGCGC
CTTTGATGCTTAACAGATCCCCCATTGCTGCTACCGCCACTTCCGTTGAC
TACGCCAGATACGCCTCCTCCGTTGCTGTGATCCTGGGCGGGATATCGGG
TTACAACGTCGTCAATTAGCTCCAGAATGCCAATCTTGAACTTGCGACGT
TGCTGTGGAGTGAGAGTCGCCAGATCTGGGAGAATGCTGCGGAAGAACTC
CATGTCCGCCACTTCCGACGAACTCAGTCCGCCGTAAATACTTCCTGCAT
TCGTCATCGTGCTGGTGGCCTCGCATTCCGTCTTGATTCTTTTCGTGCTC
CCCGGTTCGTAGGATGCTGGGTGATGATCCATGGACAATGTCAAAGGATG
TGGATGCGAGTGCGGATGGTAGTGCAGAGGCGGTGGTGTGCCATGTCCAC
CATCGCTGTAGATGAGTTGCGAGCCCGTCTCGGCCAGCTGCACATCTGGA
ATGAAGTTTTTCATGCTATCCGCACTAGCGGTATCGCTTCTGGCCGGTGA
ATTGCCTCCGCCTCCTTGAAGGGCAGAACTGCGAGTGGGCGTGGACGAAG
TACGATTCATACCCAGGGTGTTGGTAACCGCGGGATCAAAGGCGTCGATG
GTCTCCTCATCGTCCTTCTCCGATATCGAGTACTTCATCTCCAAGACCTC
CATACTCTCACCATTATGGACGTCGTTGTTATTATTATTATTATTGATGC
TAGTGTTGGCGCAGTACTTGTGCTCCTCGGTCGCATGGAGTGCTGGATGC
AGGAGAAATGGTTGATGCTGCAAATGCTGCTGGGACATCTGGTACAGAGT
GGCCAGACTGTTGTTCCCCTCCAAAGAGTTACGGCTGGACTTCANGAAGG
GCAGCAGGAACGCCATGTGCTCGGTCA

BS05082.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-PA 1308 CG3838-RA 398..1308 927..17 4536 99.8 Minus
CG3838-PB 1308 CG3838-RB 398..1308 927..17 4536 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-RB 3091 CG3838-RB 1574..2485 927..16 4549 99.9 Minus
CG3838-RA 2256 CG3838-RA 739..1650 927..16 4549 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9572055..9572966 927..16 4549 99.9 Minus
Blast to na_te.dros performed on 2015-02-09 02:21:35 has no hits.

BS05082.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:34 Download gff for BS05082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-PA 399..1308 17..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:04 Download gff for BS05082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-PB 399..1308 17..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:03:45 Download gff for BS05082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 740..1650 16..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:15:33 Download gff for BS05082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 740..1650 16..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:15:33 Download gff for BS05082.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9572056..9572966 16..926 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:03:45 Download gff for BS05082.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9572056..9572966 16..926 99   Minus

BS05082.5prime Sequence

924 bp (724 high quality bases) assembled on 2005-11-29

> BS05082.5prime
GAAGTTATCAGTCGACATGACCACCTCAACCCGCAGCAGCAGCAACAACC
ACAGCAGCGAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAAC
CACCACAGTCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGG
ATCCACCAACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCG
TCAACCTGGTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAG
TACCGCAACAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGA
GACAAGAGAAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGG
CCTGCCTATCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCAC
AAGCCATACTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAA
GTCCAGCCGTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACC
AGATGTCCCAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCA
CTCCATGCGACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAA
TAATAATAATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGG
AGATGAAGTACTCGATATCGGAGAAGGACGATGAGGAGACCATCGACGCC
TTTGATCCCGCGGTTACCAACACCCTGGGTATGAATCGTACTTCGTCCAC
GCCCACTCGCAGTTCTGCCCTTCAAGGAGGCGGAGGCAATTCACCGGCCA
GAAGCGATACCGCTAGTGCGGATAGCATGAAAAACTTCATTCCAGATGTG
CAGCTGGGCGAGACGGGCTCGCAACTCATCTACAGCGATGGTGGACATGG
CACACCACCGCCTCTGCACTACCA

BS05082.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-PA 1308 CG3838-RA 1..908 17..924 4515 99.8 Plus
CG3838-PB 1308 CG3838-RB 1..908 17..924 4515 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-RB 3091 CG3838-RB 1177..2084 17..924 4525 99.9 Plus
CG3838-RA 2256 CG3838-RA 342..1249 17..924 4525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9571955..9572565 314..924 3040 99.8 Plus
2L 23513712 2L 9571509..9571754 17..262 1230 100 Plus
2L 23513712 2L 9571838..9571894 258..314 285 100 Plus
Blast to na_te.dros performed 2015-02-11 23:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6836 20..141 156 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6898 34..137 153 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6818..7027 21..237 150 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2431 16..107 143 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6854 34..141 143 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2527 10..107 140 63.3 Plus
roo 9092 roo DM_ROO 9092bp 1054..1141 24..108 135 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2773..2887 3..107 129 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1585 12..63 122 73.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6914 34..141 120 60.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7937..7985 7..58 117 75 Plus
TART-C 11124 TART-C TARTC 11124bp 9381..9429 7..58 117 75 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 131..177 13..59 109 70.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9161..9207 13..59 109 70.2 Plus

BS05082.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:36 Download gff for BS05082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:05 Download gff for BS05082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-PB 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:59 Download gff for BS05082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 334..1248 9..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:07 Download gff for BS05082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 334..1248 9..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:07 Download gff for BS05082.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9571501..9571753 9..261 98 -> Plus
2L 9571842..9571894 262..314 100 -> Plus
2L 9571956..9572564 315..923 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:59 Download gff for BS05082.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9571501..9571753 9..261 98 -> Plus
arm_2L 9571842..9571894 262..314 100 -> Plus
arm_2L 9571956..9572564 315..923 99   Plus

BS05082.complete Sequence

1340 bp (1340 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635056

> BS05082.complete
GAAGTTATCAGTCGACATGACCACCTCAACCCGCAGCAGCAGCAACAACC
ACAGCAGCGAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAAC
CACCACAGTCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGG
ATCCACCAACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCG
TCAACCTGGTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAG
TACCGCAACAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGA
GACAAGAGAAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGG
CCTGCCTATCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCAC
AAGCCATACTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAA
GTCCAGCCGTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACC
AGATGTCCCAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCA
CTCCATGCGACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAA
TAATAATAATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGG
AGATGAAGTACTCGATATCGGAGAAGGACGATGAGGAGACCATCGACGCC
TTTGATCCCGCGGTTACCAACACCCTGGGTATGAATCGTACTTCGTCCAC
GCCCACTCGCAGTTCTGCCCTTCAAGGAGGCGGAGGCAATTCACCGGCCA
GAAGCGATACCGCTAGTGCGGATAGCATGAAAAACTTCATTCCAGATGTG
CAGCTGGCCGAGACGGGCTCGCAACTCATCTACAGCGATGGTGGACATGG
CACACCACCGCCTCTGCACTACCATCCGCACTCGCATCCACATCCTTTGA
CATTGTCCATGGATCATCACCCAGCATCCTACGAACCGGGGAGCACGAAA
AGAATCAAGACGGAATGCGAGGCCACCAGCACGATGACGAATGCAGGAAG
TATTTACGGCGGACTGAGTTCGTCGGAAGTGGCGGACATGGAGTTCTTCC
GCAGCATTCTCCCAGATCTGGCGACTCTCACTCCACAGCAACGTCGCAAG
TTCAAGATTGGCATTCTGGAGCTAATTGACGACGTTGTAACCCGATATCC
CGCCCAGGATCACAGCAACGGAGGAGGCGTATCTGGCGTAGTCAACGGAA
GTGGCGGTAGCAGCAATGGGGGATCTGTTAAGCATCAAAGGCGCAGCTCT
GGACGCGATTGGAGGAAACAATAAAAGCTTTCTAGACCAT

BS05082.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-RB 1308 CG3838-PB 1..1308 17..1324 6540 100 Plus
CG3838-RA 1308 CG3838-PA 1..1308 17..1324 6540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-RB 3091 CG3838-RB 1177..2485 17..1325 6545 100 Plus
CG3838-RA 2256 CG3838-RA 342..1650 17..1325 6545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9571955..9572966 314..1325 5060 100 Plus
2L 23513712 2L 9571509..9571754 17..262 1230 100 Plus
2L 23513712 2L 9571838..9571894 258..314 285 100 Plus
Blast to na_te.dros performed 2014-11-27 17:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6836 20..141 156 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6898 34..137 153 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6818..7027 21..237 150 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2431 16..107 143 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2527 10..107 140 63.3 Plus
roo 9092 roo DM_ROO 9092bp 1054..1141 24..108 135 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2773..2887 3..107 129 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1585 12..63 122 73.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6914 34..141 120 60.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7937..7985 7..58 117 75 Plus
TART-C 11124 TART-C TARTC 11124bp 9381..9429 7..58 117 75 Plus

BS05082.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:01 Download gff for BS05082.complete
Subject Subject Range Query Range Percent Splice Strand
CG3838-RB 1..1308 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:20 Download gff for BS05082.complete
Subject Subject Range Query Range Percent Splice Strand
CG3838-RB 1123..2439 9..1325 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:13 Download gff for BS05082.complete
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 342..1640 17..1315 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:02 Download gff for BS05082.complete
Subject Subject Range Query Range Percent Splice Strand
CG3838-RB 1123..2439 9..1325 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:32 Download gff for BS05082.complete
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 342..1640 17..1315 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:32 Download gff for BS05082.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9571509..9571753 17..261 100 -> Plus
2L 9571842..9571894 262..314 100 -> Plus
2L 9571956..9572956 315..1315 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:13 Download gff for BS05082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9571842..9571894 262..314 100 -> Plus
arm_2L 9571509..9571753 17..261 100 -> Plus
arm_2L 9571956..9572956 315..1315 100   Plus

BS05082.pep Sequence

Translation from 16 to 1323

> BS05082.pep
MTTSTRSSSNNHSSEHEERTSNGTTAYNHHSPTGSGSGTAGASIGSTNRV
MQADEDFNIRFVNLVRTHKCLYDKKVPEYRNRDNQEKAWVLISKETRESV
IHCKERWRNLRACLSRYIKQQSGSEPQHKPYYLTEHMAFLLPFLKSSRNS
LEGNNSLATLYQMSQQHLQHQPFLLHPALHATEEHKYCANTSINNNNNNN
DVHNGESMEVLEMKYSISEKDDEETIDAFDPAVTNTLGMNRTSSTPTRSS
ALQGGGGNSPARSDTASADSMKNFIPDVQLAETGSQLIYSDGGHGTPPPL
HYHPHSHPHPLTLSMDHHPASYEPGSTKRIKTECEATSTMTNAGSIYGGL
SSSEVADMEFFRSILPDLATLTPQQRRKFKIGILELIDDVVTRYPAQDHS
NGGGVSGVVNGSGGSSNGGSVKHQRRSSGRDWRKQ*

BS05082.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-PB 435 CG3838-PB 1..435 1..435 2309 100 Plus
CG3838-PA 435 CG3838-PA 1..435 1..435 2309 100 Plus
CG4404-PA 308 CG4404-PA 11..303 54..391 201 23.5 Plus
CG3919-PB 302 CG3919-PB 18..96 58..140 165 41 Plus
CG3919-PC 318 CG3919-PC 18..96 58..140 165 41 Plus