Clone Sequence Records
BS05083.complete Sequence
2816 bp assembled on 2009-12-07
GenBank Submission: KX797299
> BS05083.complete
GAAGTTATCAGTCGACATGCAGCATGGATCCTCCCGCATTCCGAAACAGG
AAGCTCTCCCGAATGCGATATCCGGGCCCGACTCCAGCAATTGGACTTCG
CTGCACGAGGCGGTAGCCGCCGGAGATGATCGCCGGGTGGAGGGTCTCCT
GTTCAGCAATGCTGATCGACTGGCCAGGGAATCCGTGCAGGGGAATACCC
CGCTCCATGAGGCCGCCAGTCGGGGGTTCAGTCGCTGCGTGAAATTGATC
TGCACGCCCCCCACGCCACCCGCTTCCTCGGGGGTGGGAAAAGCAGCAAA
GGGACAGAAGGACAAAGACAAGGATAAGAACAAGGGCAGAGTGAAGGTGG
CCCACCAGACCATCGAAGCCCTACACAATAGCGCCCTGGGTATTGCCAAC
AACGAAGGGTTGTCCGCCCTGCACTTGGCCGCTCAAAATGGTCACAATCA
GAGCTCTAGGGAGCTACTGCTGGCCGGCGCCGATCCCGATGTCCGGAATA
ATTATGGAGATACTCCGCTGCACACCGCCTGCAGATATGGACATGCAGGA
GTCTCCCGGATCCTGCTCTCCGCCCTTTGCGATCCGAATAAAACAAATCT
GAACGGCGACACCGCTTTGCACATCACCTGTGCCATGGGTCGCAGGAAGC
TGACAAGGATTCTCCTAGAGGCAGATGCTCGGCTGGGCATTAAAAACGCA
CAAGGCGACTGCCCCATGCACATAGCGATCAGGAAGAACTACCGTGAAAT
CATCGAGATCCTGAACACGCCGAAGAAGATACGGAATCGCAAGGAGAAAC
CCAAGGAGGGCGGCAGCAGATCGGACAAGGACAGAGATCGTGAAAGGGAT
GTGGTGGACAAGGGTATCAACTGGTCACCCTATGGCTGTCACTACTTTCC
CGATCCGCGTGCCTTTCCTTCACCAAAACTGGAGACACTGCCCAAGGAGC
CACTTAAGTCGGGGGAGCAATACTTCCTGGATTTGGCTGGTCATATTCAC
AAGGGTCCGGTCAGCGTGGGCAACACATGCTATTGCGGTCCCTTCTTCCG
TCACATTGAAAACAAACTAAATTGCAATCGAAAGAGTTTGAAGAAATACG
TTCACAAAACCAAGGAACGTCTAGGTCACAAAGTTCAGGCATTGGCAATC
AAGACGAACGATCAGATTGAACAGCTCACAAGAACGATGATCGAGGACAG
ATTGCGATGCGAGAGCAAGAGGCAGCACCTCAGTGAGTTCCTGCGACGAG
GTGAACCTATGCGGTCCACCTTCGATCAGCAGAACAAGAGCTCAAGGATC
GAAAGAACAATGTCCAGGTGCCGCAGTCTAGAGCTCTTGGAAAACAACCA
CGAAGGTGGTAGGCTCACCAACTCACGGAGTGTAGATGTCCTGGAAGATC
AGGCAGTGGAGGCTATAGTACACCGATCAGCGGAGGTCCAGGTGGATAGC
GACAGCGATGACGATTCCAATGAAGCTCGGGATGAAGAAGAGGCAGAAGT
GGGTGACAAGGACCAGGTGCAAGAAGAGGCGGAACCAGAGGAGCACTCGA
AGCTAGATGAACTTAAGCTAGATTTCCTAAAAGTCTCCGAAAGACTGGGA
GTGCTTTTAGAGAAAACCACCCTGATCATGGAAAGGGACAGCGAACAGGA
GAGCAAGCGCCAGCTTTCTTCCTTATCGCCACCTTATAATCCCCATCCAA
GGGCGGAGTCTGCCCAACTTCGAGAAGATAAAGAGAGTGTTAATAGTCCC
AATTTCGACGAGTACGCCAACGTGATACGACGCTATCCGAACTCCAGTGA
GACCTCAAATCCCTCCCAGAACTCCAACAGCTGGGACTGGGAGGCATCAC
CCACGGGCAGCAATCCCCACCCGGATTACAATAAGTACTACCAGCGCATT
GGGAGAGGAGAGAACATGCTGAACTCGGTGATCAAGGCGCTTCGAAAAGA
TGCCTCCTTCGCGGATCTGGGCAAAGAGGAGACGGCTGTCAATGAAACTG
CCGAGGGAATGGGAGGCGACAAGCTGCTCTACAAGGAGCAAGCGAGCGAG
GCGGCAGGTATCTCCAATCTGATGAAACGGCAGCCTCTTTGCTTGGAAGA
CAACTATCCCGTCATGTCGAATTTATTTTACTCCAATCCCATCATGGAGT
ACGCCGAGGAAACAGAAGTGCGTCAAAATGGCAATGAAAGTATGAGTAAG
GTGGAGATTCGGAACAGTGAAATCAAGTGCCTAAAGAAGCCGAACGCTGG
TCAGGTGAGGGATATGGTGGCCCAACTGCAAAACACCATTGACTCCAATC
GACAGGACTCCCAGACGGCACATGTGATCGCCGCAAGATCACACTCCCGC
TTGAACAATAACTTCCATCACTTGGAGGGCACCTCTTCGAACCCTTCGCC
CACGTATAGTATTCCCCACCGGAGTAGCGCCCAGTTTGGGCTGCCCGAGA
GACACATACCCAAAGATGCTTACTTCCATGAACTGCCCCACCGTCCACCG
ATTCCGCAAACTCCGCAGAGAAGGCTGCACTCCGGCTACGTACCAAATGC
GAGTCTCTATCGCAGTGAAGATCTTTACGTGGGAAGGATTCCACATCCAA
ATGCTCCACCAAGACAAGTGGACTACGTGGATGCGGTAGCCTATAGGCCT
CTGCAGTCCCCCACCTTTCAGGCCATTGTGCCGCCCCATGTTAATCAAAG
GCCAAGGAACTGGCCTCATCCCAATCTTCCATCCAATGAAATCGATCTGG
ACGAGCTGTCTGCCGTTGGCCTCTACAACAATGTCTCGAGTCTAGTTTGA
AAGCTTTCTAGACCAT
BS05083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 2784 | CG12342-PB | 1..2784 | 17..2800 | 13920 | 100 | Plus |
| dgo-RA | 2784 | CG12342-PA | 1..2784 | 17..2800 | 13920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 3539 | CG12342-RB | 597..3380 | 17..2800 | 13920 | 100 | Plus |
| dgo-RA | 3142 | CG12342-RA | 200..2983 | 17..2800 | 13920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10816196..10818493 | 2800..503 | 11490 | 100 | Minus |
| 2R | 25286936 | 2R | 10818549..10818975 | 502..76 | 2135 | 100 | Minus |
| 2R | 25286936 | 2R | 10819041..10819100 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:39:41 has no hits.
BS05083.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:33 Download gff for
BS05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RB | 586..3368 | 17..2799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:51 Download gff for
BS05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..2982 | 17..2799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:23 Download gff for
BS05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RB | 586..3368 | 17..2799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:36 Download gff for
BS05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..2982 | 17..2799 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:36 Download gff for
BS05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10816197..10818493 | 503..2799 | 100 | <- | Minus |
| 2R | 10818549..10818974 | 77..502 | 100 | <- | Minus |
| 2R | 10819041..10819100 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:51 Download gff for
BS05083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6703702..6705998 | 503..2799 | 100 | <- | Minus |
| arm_2R | 6706054..6706479 | 77..502 | 100 | <- | Minus |
| arm_2R | 6706546..6706605 | 17..76 | 100 | | Minus |
BS05083.3prime Sequence
845 bp (844 high quality bases) assembled on 2005-12-02
> BS05083.3prime
ATGGTCTAGAAAGCTTTCAAACTAGACTCGAGACATTGTTGTAGAGGCCA
ACGGCAGACAGCTCGTCCAGATCGATTTCATTGGATGGAAGATTGGGATG
AGGCCAGTTCCTTGGCCTTTGATTAACATGGGGCGGCACAATGGCCTGAA
AGGTGGGGGACTGCAGAGGCCTATAGGCTACCGCATCCACGTAGTCCACT
TGTCTTGGTGGAGCATTTGGATGTGGAATCCTTCCCACGTAAAGATCTTC
ACTGCGATAGAGACTCGCATTTGGTACGTAGCCGGAGTGCAGCCTTCTCT
GCGGAGTTTGCGGAATCGGTGGACGGTGGGGCAGTTCATGGAAGTAAGCA
TCTTTGGGTATGTGTCTCTCGGGCAGCCCAAACTGGGCGCTACTCCGGTG
GGGAATACTATACGTGGGCGAAGGGTTCGAAGAGGTGCCCTCCAAGTGAT
GGAAGTTATTGTTCAAGCGGGAGTGTGATCTTGCGGCGATCACATGTGCC
GTCTGGGAGTCCTGTCGATTGGAGTCAATGGTGTTTTGCAGTTGGGCCAC
CATATCCCTCACCTGACCAGCGTTCGGCTTCTTTAGGCACTTGATTTCAC
TGTTCCGAATCTCCACCTTACTCATACTTTCATTGCCATTTTGACGCACT
TCTGTTTCCTCGGCGTACTCCATGATGGGATTGGAGTAAAATAAATTCGA
CATGACGGGATAGTTGTCTTCCAAGCAAAGAGGCTGCCGTTTCATCAGAT
TGGAGATACCTGCCGCCTCGCTCGCTTGCTCCTTGTAGAGCAGCTTGTCG
CCTCCCATTCCCTCGGCAGTTTCATTGACAGCCGTCTCCTCTTTG
BS05083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12342-PA | 2784 | CG12342-RA | 1956..2784 | 845..17 | 4145 | 100 | Minus |
| CG12342-PB | 2784 | CG12342-RB | 1956..2784 | 845..17 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 3539 | CG12342-RB | 2552..3380 | 845..17 | 4145 | 100 | Minus |
| dgo-RA | 3142 | CG12342-RA | 2155..2983 | 845..17 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10816196..10817024 | 17..845 | 4145 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:36:44 has no hits.
BS05083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:37 Download gff for
BS05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12342-PB | 1956..2784 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:08 Download gff for
BS05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12342-PB | 1956..2784 | 17..845 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:15:39 Download gff for
BS05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 2155..2986 | 11..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:57 Download gff for
BS05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 2155..2986 | 11..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:57 Download gff for
BS05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10816193..10817024 | 11..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:15:39 Download gff for
BS05083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6703698..6704529 | 11..845 | 99 | | Plus |
BS05083.5prime Sequence
824 bp (823 high quality bases) assembled on 2005-12-02
> BS05083.5prime
GAAGTTATCAGTCGACATGCAGCATGGATCCTCCCGCATTCCGAAACAGG
AAGCTCTCCCGAATGCGATATCCGGGCCCGACTCCAGCAATTGGACTTCG
CTGCACGAGGCGGTAGCCGCCGGAGATGATCGCCGGGTGGAGGGTCTCCT
GTTCAGCAATGCTGATCGACTGGCCAGGGAATCCGTGCAGGGGAATACCC
CGCTCCATGAGGCCGCCAGTCGGGGGTTCAGTCGCTGCGTGAAATTGATC
TGCACGCCCCCCACGCCACCCGCTTCCTCGGGGGTGGGAAAAGCAGCAAA
GGGACAGAAGGACAAAGACAAGGATAAGAACAAGGGCAGAGTGAAGGTGG
CCCACCAGACCATCGAAGCCCTACACAATAGCGCCCTGGGTATTGCCAAC
AACGAAGGGTTGTCCGCCCTGCACTTGGCCGCTCAAAATGGTCACAATCA
GAGCTCTAGGGAGCTACTGCTGGCCGGCGCCGATCCCGATGTCCGGAATA
ATTATGGAGATACTCCGCTGCACACCGCCTGCAGATATGGACATGCAGGA
GTCTCCCGGATCCTGCTCTCCGCCCTTTGCGATCCGAATAAAACAAATCT
GAACGGCGACACCGCTTTGCACATCACCTGTGCCATGGGTCGCAGGAAGC
TGACAAGGATTCTCCTAGAGGCAGATGCTCGGCTGGGCATTAAAAACGCA
CAAGGCGACTGCCCCATGCACATAGCGATCAGGAAGAACTACCGTGAAAT
CATCGAGATCCTGAACACGCCGAAGAAGATACGGAATCGCAAGGAGAAAC
CCAAGGAGGGCGGCAGCAGATCGG
BS05083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12342-PA | 2784 | CG12342-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
| CG12342-PB | 2784 | CG12342-RB | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 3539 | CG12342-RB | 597..1404 | 17..824 | 4040 | 100 | Plus |
| dgo-RA | 3142 | CG12342-RA | 200..1007 | 17..824 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10818549..10818975 | 502..76 | 2135 | 100 | Minus |
| 2R | 25286936 | 2R | 10818172..10818493 | 824..503 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 10819041..10819100 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:54 has no hits.
BS05083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:38 Download gff for
BS05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12342-PB | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:09 Download gff for
BS05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12342-PB | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:52 Download gff for
BS05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..1007 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:03 Download gff for
BS05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..1007 | 17..824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:03 Download gff for
BS05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10818172..10818493 | 503..824 | 100 | <- | Minus |
| 2R | 10818549..10818974 | 77..502 | 100 | <- | Minus |
| 2R | 10819041..10819110 | 5..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:52 Download gff for
BS05083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6705677..6705998 | 503..824 | 100 | <- | Minus |
| arm_2R | 6706054..6706479 | 77..502 | 100 | <- | Minus |
| arm_2R | 6706546..6706615 | 5..76 | 93 | | Minus |
BS05083.pep Sequence
Translation from 16 to 2799
> BS05083.pep
MQHGSSRIPKQEALPNAISGPDSSNWTSLHEAVAAGDDRRVEGLLFSNAD
RLARESVQGNTPLHEAASRGFSRCVKLICTPPTPPASSGVGKAAKGQKDK
DKDKNKGRVKVAHQTIEALHNSALGIANNEGLSALHLAAQNGHNQSSREL
LLAGADPDVRNNYGDTPLHTACRYGHAGVSRILLSALCDPNKTNLNGDTA
LHITCAMGRRKLTRILLEADARLGIKNAQGDCPMHIAIRKNYREIIEILN
TPKKIRNRKEKPKEGGSRSDKDRDRERDVVDKGINWSPYGCHYFPDPRAF
PSPKLETLPKEPLKSGEQYFLDLAGHIHKGPVSVGNTCYCGPFFRHIENK
LNCNRKSLKKYVHKTKERLGHKVQALAIKTNDQIEQLTRTMIEDRLRCES
KRQHLSEFLRRGEPMRSTFDQQNKSSRIERTMSRCRSLELLENNHEGGRL
TNSRSVDVLEDQAVEAIVHRSAEVQVDSDSDDDSNEARDEEEAEVGDKDQ
VQEEAEPEEHSKLDELKLDFLKVSERLGVLLEKTTLIMERDSEQESKRQL
SSLSPPYNPHPRAESAQLREDKESVNSPNFDEYANVIRRYPNSSETSNPS
QNSNSWDWEASPTGSNPHPDYNKYYQRIGRGENMLNSVIKALRKDASFAD
LGKEETAVNETAEGMGGDKLLYKEQASEAAGISNLMKRQPLCLEDNYPVM
SNLFYSNPIMEYAEETEVRQNGNESMSKVEIRNSEIKCLKKPNAGQVRDM
VAQLQNTIDSNRQDSQTAHVIAARSHSRLNNNFHHLEGTSSNPSPTYSIP
HRSSAQFGLPERHIPKDAYFHELPHRPPIPQTPQRRLHSGYVPNASLYRS
EDLYVGRIPHPNAPPRQVDYVDAVAYRPLQSPTFQAIVPPHVNQRPRNWP
HPNLPSNEIDLDELSAVGLYNNVSSLV*
BS05083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-PB | 927 | CG12342-PB | 1..927 | 1..927 | 4877 | 100 | Plus |
| dgo-PA | 927 | CG12342-PA | 1..927 | 1..927 | 4877 | 100 | Plus |
| CG42534-PD | 1430 | CG42534-PD | 97..615 | 18..512 | 236 | 22.1 | Plus |
| CG42534-PC | 1555 | CG42534-PC | 222..740 | 18..512 | 236 | 22.1 | Plus |
| Ank2-PN | 1159 | CG34416-PN | 438..665 | 27..261 | 218 | 31.1 | Plus |
