Clone Sequence Records
BS05084.3prime Sequence
873 bp (870 high quality bases) assembled on 2005-12-02
> BS05084.3prime
ATGGTCTAGAAAGCTTTCAGACATTGGGCTTACGGAAAATCTCATTCGGA
TGCTGATTGCTGCTGAAGTTCTGCCGTGTCGAGCATTGCGCTTGCTTCTT
TTCCCAGGACTTCATTGCTGTTTTGTATTTCTCGAACTCGTGGCACCAGT
CCGAGTAGATTTTCTGATAGTCATTACTCTTGTTCGGCGGAGTGCATCTG
TGGGCATCCACCGTAATGTTGTAGCTGCACAAAAGCGAGCCGCCCAAATG
GCAATCGTACCGACCACCATCGGCTTCGTTCACGGAAACCACAACCAGGC
CACGTTCGGTGGTCTCAATGTATTTGGTCGGCGAGTAACGAATCTCGTAG
CGTCCCTTGTCCTTGGAGTGATGATACCAGGTCACTTGCTCATTCTTCAG
CACTTCGGGTATTTTGACGAAACAGCCCAGATGTACACTCTGGCCATAGG
TCACCACAATCTTCTTTTTCAGCACACTCGAATCGCAAATGTCACTCGTT
TCATTGGCCACATCCTGCAGTAAATCCAGCTCGTACGGTCGGCACGTATT
GGCCTCCTTATCCCAGCCGCAGTAGGGATCACGGACGCAGCGGAAGCAGT
TGTCGTAACGGCGATTGCACATGGCCAGGTCGATTTGCTTGATGCGATGA
TCGGTGCCAATGTAGAGGCTCTTACGTGTCTGGCTGATTTCCATCACTTG
GATGGCCTCGTTTGGAGCCACCTCGAAGATATCCAGCAGCTTGGACAGCG
ACTCTCCGTTACGGTAGTACTGCACGATTTTGTAAATGCGACCCAGATTG
GTGCCCACATAGTACACAATGTATTCCTGATTGAGGATGTCAATGCGAAT
TTTGTCAACGACGAGCTTGGTGA
BS05084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4700-PC | 2094 | Sema-2a-RC | 1238..2094 | 873..17 | 4285 | 100 | Minus |
| CG4700-PB | 2175 | Sema-2a-RB | 1319..2175 | 873..17 | 4285 | 100 | Minus |
| CG4700-PA | 2175 | Sema-2a-RA | 1319..2175 | 873..17 | 4285 | 100 | Minus |
| CG4700-PD | 2106 | Sema-2a-RD | 1250..2106 | 873..17 | 4285 | 100 | Minus |
| CG33960-PA | 2355 | CG33960-RA | 2185..2235 | 172..122 | 155 | 92.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2a-RE | 3440 | CG4700-RE | 1556..2412 | 873..17 | 4285 | 100 | Minus |
| Sema-2a-RA | 3580 | CG4700-RA | 1696..2552 | 873..17 | 4285 | 100 | Minus |
| Sema-2a-RB | 3481 | CG4700-RB | 1597..2453 | 873..17 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16530729..16531066 | 851..514 | 1690 | 100 | Minus |
| 2R | 25286936 | 2R | 16531226..16531395 | 520..351 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 16531458..16531611 | 351..198 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 16531790..16531902 | 201..89 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 16426693..16426852 | 656..497 | 365 | 81.9 | Minus |
| 2R | 25286936 | 2R | 16532328..16532400 | 89..17 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 16428449..16428511 | 172..110 | 210 | 88.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:05:00 has no hits.
BS05084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:39 Download gff for
BS05084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4700-PC | 1239..2094 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:10 Download gff for
BS05084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4700-PD | 1251..2106 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:32:23 Download gff for
BS05084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RC | 1634..2489 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:25 Download gff for
BS05084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 1598..2453 | 17..872 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:25 Download gff for
BS05084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16530458..16530478 | 852..872 | 100 | -> | Minus |
| 2R | 16530729..16531065 | 515..851 | 100 | -> | Minus |
| 2R | 16531232..16531395 | 351..514 | 100 | -> | Minus |
| 2R | 16531459..16531611 | 198..350 | 100 | -> | Minus |
| 2R | 16531794..16531902 | 89..197 | 100 | -> | Minus |
| 2R | 16532329..16532400 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:32:23 Download gff for
BS05084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12419834..12419905 | 17..88 | 100 | | Minus |
| arm_2R | 12417963..12417983 | 852..872 | 100 | -> | Minus |
| arm_2R | 12418234..12418570 | 515..851 | 100 | -> | Minus |
| arm_2R | 12418737..12418900 | 351..514 | 100 | -> | Minus |
| arm_2R | 12418964..12419116 | 198..350 | 100 | -> | Minus |
| arm_2R | 12419299..12419407 | 89..197 | 100 | -> | Minus |
BS05084.5prime Sequence
889 bp (819 high quality bases) assembled on 2005-12-02
> BS05084.5prime
GAAGTTATCAGTCGACATGTCGCTTCTACAGCTATCGCCGCTCCTCGCAC
TCCTGCTACTCCTCTGCAGTAGTGTGAGCGAGACAGCTGCGGACTACGAG
AACACCTGGAACTTCTACTACGAGCGTCCCTGTTGCACTGGAAACGATCA
GGGGAACAACAATTACGGGAAACACGGCGCAGATCATGTGCGGGAGTTCA
ACTGCGGCAAGCTGTACTATCGTACATTCCATATGAACGAAGATCGAGAT
ACGCTCTATGTGGGAGCCATGGATCGCGTATTCCGTGTGAACCTGCAGAA
TATCTCCTCATCCAATTGTAATCGGGATGTGATCAACTTGGAGCCAACAC
GGGATGATGTGGTTAGCTGCGTCTCCAAAGGCAAAAGTCAGATCTTCGAC
TGCAAGAACCATGTGCGTGTCATCCAGTCAATGGACCAGGGGGATAGGCT
CTATGTATGCGGCACCAACGCCCACAATCCCAAGGATTATGTTATCTATG
CGAATCTAACCCACCTGCCGCGCTCGGAATATGTGATTGGCGTGGGTCTG
GGCATTGCCAAGTGCCCCTACGATCCCCTCGACAACTCAACTGCGATTTA
TGTGGAGAATGGCAATCCGGGTGGTCTGCCCGGTTTGTACTCCGGCACCA
ATGCGGAGTTCACCAAGGCGGATACGGTTATTTTCCGCACTGATCTGTAT
AATACTTCGGCTAAACGTTTGGAATATAAATTCAAGAGGACTCTGAAATA
CGACTCCAAGTGGTTGGACAAACCAAACTTTGTCGGCTCCTTTGATATTG
GGGAGTACGTGTATTTCTTTTTCCCGTGAACCGCCGTGGAATACATCAAC
TGCGGGCAGGCTGTCTATTCGCGCATCGCACGGGTGTGC
BS05084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4700-PB | 2175 | Sema-2a-RB | 1..808 | 17..824 | 4040 | 100 | Plus |
| CG4700-PA | 2175 | Sema-2a-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
| CG4700-PC | 2094 | Sema-2a-RC | 83..727 | 180..824 | 3225 | 100 | Plus |
| CG4700-PD | 2106 | Sema-2a-RD | 307..739 | 392..824 | 2165 | 100 | Plus |
| CG4700-PD | 2106 | Sema-2a-RD | 1..306 | 17..322 | 1530 | 100 | Plus |
| CG4700-PB | 2175 | Sema-2a-RB | 813..873 | 829..889 | 255 | 96.7 | Plus |
| CG4700-PA | 2175 | Sema-2a-RA | 813..873 | 829..889 | 255 | 96.7 | Plus |
| CG4700-PD | 2106 | Sema-2a-RD | 744..804 | 829..889 | 255 | 96.7 | Plus |
| CG4700-PC | 2094 | Sema-2a-RC | 732..792 | 829..889 | 255 | 96.7 | Plus |
| CG33960-PA | 2355 | CG33960-RA | 598..635 | 452..489 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2a-RE | 3440 | CG4700-RE | 238..1110 | 17..889 | 4290 | 99.5 | Plus |
| Sema-2a-RA | 3580 | CG4700-RA | 378..1250 | 17..889 | 4290 | 99.5 | Plus |
| Sema-2a-RB | 3481 | CG4700-RB | 279..1151 | 17..889 | 4290 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16517176..16517341 | 17..182 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 16528899..16529036 | 500..637 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 16529107..16529240 | 637..770 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 16528539..16528650 | 389..500 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 16529359..16529477 | 771..889 | 505 | 95 | Plus |
| 2R | 25286936 | 2R | 16525371..16525462 | 180..271 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 16527614..16527682 | 323..391 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 16525709..16525764 | 267..322 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:09:56 has no hits.
BS05084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:41 Download gff for
BS05084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4700-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:11 Download gff for
BS05084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4700-PB | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:09:06 Download gff for
BS05084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 274..1151 | 8..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:47 Download gff for
BS05084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 274..1151 | 8..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:47 Download gff for
BS05084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16528899..16529036 | 500..637 | 100 | -> | Plus |
| 2R | 16529108..16529240 | 638..770 | 100 | -> | Plus |
| 2R | 16529359..16529477 | 771..889 | 96 | | Plus |
| 2R | 16517171..16517341 | 8..182 | 97 | -> | Plus |
| 2R | 16525374..16525461 | 183..270 | 100 | -> | Plus |
| 2R | 16525713..16525764 | 271..322 | 100 | -> | Plus |
| 2R | 16527614..16527682 | 323..391 | 100 | -> | Plus |
| 2R | 16528542..16528649 | 392..499 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:09:06 Download gff for
BS05084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12416613..12416745 | 638..770 | 100 | -> | Plus |
| arm_2R | 12416047..12416154 | 392..499 | 100 | -> | Plus |
| arm_2R | 12416404..12416541 | 500..637 | 100 | -> | Plus |
| arm_2R | 12404676..12404846 | 8..182 | 97 | -> | Plus |
| arm_2R | 12412879..12412966 | 183..270 | 100 | -> | Plus |
| arm_2R | 12413218..12413269 | 271..322 | 100 | -> | Plus |
| arm_2R | 12415119..12415187 | 323..391 | 100 | -> | Plus |
| arm_2R | 12416864..12416982 | 771..889 | 96 | | Plus |
BS05084.complete Sequence
2207 bp assembled on 2009-12-07
GenBank Submission: KX798853
> BS05084.complete
GAAGTTATCAGTCGACATGTCGCTTCTACAGCTATCGCCGCTCCTCGCAC
TCCTGCTACTCCTCTGCAGTAGTGTGAGCGAGACAGCTGCGGACTACGAG
AACACCTGGAACTTCTACTACGAGCGTCCCTGTTGCACTGGAAACGATCA
GGGGAACAACAATTACGGGAAACACGGCGCAGATCATGTGCGGGAGTTCA
ACTGCGGCAAGCTGTACTATCGTACATTCCATATGAACGAAGATCGAGAT
ACGCTCTATGTGGGAGCCATGGATCGCGTATTCCGTGTGAACCTGCAGAA
TATCTCCTCATCCAATTGTAATCGGGATGTGATCAACTTGGAGCCAACAC
GGGATGATGTGGTTAGCTGCGTCTCCAAAGGCAAAAGTCAGATCTTCGAC
TGCAAGAACCATGTGCGTGTCATCCAGTCAATGGACCAGGGGGATAGGCT
CTATGTATGCGGCACCAACGCCCACAATCCCAAGGATTATGTTATCTATG
CGAATCTAACCCACCTGCCGCGCTCGGAATATGTGATTGGCGTGGGTCTG
GGCATTGCCAAGTGCCCCTACGATCCCCTCGACAACTCAACTGCGATTTA
TGTGGAGAATGGCAATCCGGGTGGTCTGCCCGGTTTGTACTCCGGCACCA
ATGCGGAGTTCACCAAGGCGGATACGGTTATTTTCCGCACTGATCTGTAT
AATACTTCGGCTAAACGTTTGGAATATAAATTCAAGAGGACTCTGAAATA
CGACTCCAAGTGGTTGGACAAACCAAACTTTGTCGGCTCCTTTGATATTG
GGGAGTACGTGTATTTCTTTTTCCGTGAAACCGCCGTGGAATACATCAAC
TGCGGCAAGGCTGTCTATTCGCGCATCGCACGGGTGTGCAAGAAGGATGT
GGGTGGAAAGAATCTGCTGGCCCACAACTGGGCCACCTACCTGAAGGCCA
GACTCAACTGCAGCATCTCCGGCGAATTTCCGTTCTATTTCAACGAGATC
CAATCGGTCTACCAGCTGCCCTCCGATAAGAGTCGATTCTTCGCCACATT
CACGACGAGCACTAATGGCCTGATTGGATCTGCCGTATGCAGTTTCCACA
TTAACGAGATTCAGGCTGCCTTCAATGGCAAATTCAAGGAGCAATCTTCA
TCGAATTCCGCATGGCTGCCGGTGCTTAACTCCCGGGTGCCGGAACCACG
GCCGGGTACATGTGTCAACGATACATCAAACCTGCCCGATACCGTACTGA
ATTTCATCAGATCCCATCCACTTATGGACAAAGCCGTAAATCACGAGCAC
AACAATCCAGTCTATTATAAAAGGGATTTGGTCTTCACCAAGCTCGTCGT
TGACAAAATTCGCATTGACATCCTCAATCAGGAATACATTGTGTACTATG
TGGGCACCAATCTGGGTCGCATTTACAAAATCGTGCAGTACTACCGTAAC
GGAGAGTCGCTGTCCAAGCTGCTGGATATCTTCGAGGTGGCTCCAAACGA
GGCCATCCAAGTGATGGAAATCAGCCAGACACGTAAGAGCCTCTACATTG
GCACCGATCATCGCATCAAGCAAATCGACCTGGCCATGTGCAATCGCCGT
TACGACAACTGCTTCCGCTGCGTCCGTGATCCCTACTGCGGCTGGGATAA
GGAGGCCAATACGTGCCGACCGTACGAGCTGGATTTACTGCAGGATGTGG
CCAATGAAACGAGTGACATTTGCGATTCGAGTGTGCTGAAAAAGAAGATT
GTGGTGACCTATGGCCAGAGTGTACATCTGGGCTGTTTCGTCAAAATACC
CGAAGTGCTGAAGAATGAGCAAGTGACCTGGTATCATCACTCCAAGGACA
AGGGACGCTACGAGATTCGTTACTCGCCGACCAAATACATTGAGACCACC
GAACGTGGCCTGGTTGTGGTTTCCGTGAACGAAGCCGATGGTGGTCGGTA
CGATTGCCATTTGGGCGGCTCGCTTTTGTGCAGCTACAACATTACGGTGG
ATGCCCACAGATGCACTCCGCCGAACAAGAGTAATGACTATCAGAAAATC
TACTCGGACTGGTGCCACGAGTTCGAGAAATACAAAACAGCAATGAAGTC
CTGGGAAAAGAAGCAAGCGCAATGCTCGACACGGCAGAACTTCAGCAGCA
ATCAGCATCCGAATGAGATTTTCCGTAAGCCCAATGTCTGAAAGCTTTCT
AGACCAT
BS05084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2a-RE | 2175 | CG4700-PE | 1..2175 | 17..2191 | 10875 | 100 | Plus |
| Sema-2a-RA | 2175 | CG4700-PA | 1..2175 | 17..2191 | 10875 | 100 | Plus |
| Sema-2a-RB | 2175 | CG4700-PB | 1..2175 | 17..2191 | 10875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2a-RE | 3440 | CG4700-RE | 238..2412 | 17..2191 | 10875 | 100 | Plus |
| Sema-2a-RA | 3580 | CG4700-RA | 378..2552 | 17..2191 | 10875 | 100 | Plus |
| Sema-2a-RB | 3481 | CG4700-RB | 279..2453 | 17..2191 | 10875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16529359..16529716 | 771..1128 | 1790 | 100 | Plus |
| 2R | 25286936 | 2R | 16530729..16531066 | 1357..1694 | 1690 | 100 | Plus |
| 2R | 25286936 | 2R | 16530249..16530478 | 1127..1356 | 1150 | 100 | Plus |
| 2R | 25286936 | 2R | 16531226..16531395 | 1688..1857 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 16517176..16517341 | 17..182 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 16531458..16531611 | 1857..2010 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 16528899..16529036 | 500..637 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 16529107..16529240 | 637..770 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 16531790..16531902 | 2007..2119 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 16528539..16528650 | 389..500 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 16525371..16525462 | 180..271 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 16424300..16424616 | 776..1092 | 415 | 75.4 | Plus |
| 2R | 25286936 | 2R | 16426693..16426852 | 1552..1711 | 365 | 81.9 | Plus |
| 2R | 25286936 | 2R | 16532328..16532400 | 2119..2191 | 365 | 100 | Plus |
| 2R | 25286936 | 2R | 16527614..16527682 | 323..391 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 16525709..16525764 | 267..322 | 265 | 98.2 | Plus |
| 2R | 25286936 | 2R | 16428449..16428511 | 2036..2098 | 210 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:13:36 has no hits.
BS05084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:53 Download gff for
BS05084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RA | 322..2495 | 17..2190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:08 Download gff for
BS05084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 279..2452 | 17..2190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:26 Download gff for
BS05084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RA | 322..2495 | 17..2190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:37 Download gff for
BS05084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 279..2452 | 17..2190 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:37 Download gff for
BS05084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16527614..16527682 | 323..391 | 100 | -> | Plus |
| 2R | 16528542..16528649 | 392..499 | 100 | -> | Plus |
| 2R | 16528899..16529036 | 500..637 | 100 | -> | Plus |
| 2R | 16529108..16529240 | 638..770 | 100 | -> | Plus |
| 2R | 16529359..16529715 | 771..1127 | 100 | -> | Plus |
| 2R | 16530250..16530478 | 1128..1356 | 100 | -> | Plus |
| 2R | 16517176..16517341 | 17..182 | 100 | -> | Plus |
| 2R | 16525374..16525461 | 183..270 | 100 | -> | Plus |
| 2R | 16525713..16525764 | 271..322 | 100 | -> | Plus |
| 2R | 16530729..16531065 | 1357..1693 | 100 | -> | Plus |
| 2R | 16531232..16531395 | 1694..1857 | 100 | -> | Plus |
| 2R | 16531459..16531611 | 1858..2010 | 100 | -> | Plus |
| 2R | 16531794..16531902 | 2011..2119 | 100 | -> | Plus |
| 2R | 16532329..16532399 | 2120..2190 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:08 Download gff for
BS05084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12416404..12416541 | 500..637 | 100 | -> | Plus |
| arm_2R | 12416613..12416745 | 638..770 | 100 | -> | Plus |
| arm_2R | 12415119..12415187 | 323..391 | 100 | -> | Plus |
| arm_2R | 12416047..12416154 | 392..499 | 100 | -> | Plus |
| arm_2R | 12404681..12404846 | 17..182 | 100 | -> | Plus |
| arm_2R | 12412879..12412966 | 183..270 | 100 | -> | Plus |
| arm_2R | 12413218..12413269 | 271..322 | 100 | -> | Plus |
| arm_2R | 12416864..12417220 | 771..1127 | 100 | -> | Plus |
| arm_2R | 12417755..12417983 | 1128..1356 | 100 | -> | Plus |
| arm_2R | 12418234..12418570 | 1357..1693 | 100 | -> | Plus |
| arm_2R | 12418737..12418900 | 1694..1857 | 100 | -> | Plus |
| arm_2R | 12418964..12419116 | 1858..2010 | 100 | -> | Plus |
| arm_2R | 12419299..12419407 | 2011..2119 | 100 | -> | Plus |
| arm_2R | 12419834..12419904 | 2120..2190 | 100 | | Plus |
BS05084.pep Sequence
Translation from 16 to 2190
> BS05084.pep
MSLLQLSPLLALLLLLCSSVSETAADYENTWNFYYERPCCTGNDQGNNNY
GKHGADHVREFNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSN
CNRDVINLEPTRDDVVSCVSKGKSQIFDCKNHVRVIQSMDQGDRLYVCGT
NAHNPKDYVIYANLTHLPRSEYVIGVGLGIAKCPYDPLDNSTAIYVENGN
PGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWL
DKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNL
LAHNWATYLKARLNCSISGEFPFYFNEIQSVYQLPSDKSRFFATFTTSTN
GLIGSAVCSFHINEIQAAFNGKFKEQSSSNSAWLPVLNSRVPEPRPGTCV
NDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLVFTKLVVDKIRI
DILNQEYIVYYVGTNLGRIYKIVQYYRNGESLSKLLDIFEVAPNEAIQVM
EISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFRCVRDPYCGWDKEANTC
RPYELDLLQDVANETSDICDSSVLKKKIVVTYGQSVHLGCFVKIPEVLKN
EQVTWYHHSKDKGRYEIRYSPTKYIETTERGLVVVSVNEADGGRYDCHLG
GSLLCSYNITVDAHRCTPPNKSNDYQKIYSDWCHEFEKYKTAMKSWEKKQ
AQCSTRQNFSSNQHPNEIFRKPNV*
BS05084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2a-PE | 724 | CG4700-PE | 1..724 | 1..724 | 3914 | 100 | Plus |
| Sema-2a-PA | 724 | CG4700-PA | 1..724 | 1..724 | 3914 | 100 | Plus |
| Sema-2a-PB | 724 | CG4700-PB | 1..724 | 1..724 | 3914 | 100 | Plus |
| Sema-2a-PC | 697 | CG4700-PC | 29..697 | 56..724 | 3613 | 100 | Plus |
| Sema-2b-PD | 824 | CG33960-PD | 59..779 | 3..719 | 2722 | 67.4 | Plus |
