Clone Sequence Records
BS05101.3prime Sequence
883 bp (779 high quality bases) assembled on 2005-12-02
> BS05101.3prime
ATGGTCTAGAAAGCTTTTACAACATAAACTTATTGTTCTTTTCGGACAAA
TGCTTCGAGGAGCGCTTGGCGTCAAGGAAGAGCGAGTGCACATCCTCGAT
ATCATCCTTGCTGATCTGGTTGCGTCCGTTCACCTTGCACATCTGATGAG
CCGGGGTCAGCAGCTGGACGGCGTAGCGCAGCGTGGAGCTGGTTCCAATC
TCGCTGAGACGTGTAAATGCGTTCTCCTCCAGCTGCAGTCCCTCGGTCTG
GGCGCGCAACTTGATTATCTGCTCCATGTCGGCAGTGGAGTAGAGTAGTG
TGCGGATGATCAGCAAACGATCGAGCAGATCTAGCGGAATTCCGTGCGGC
GAAACTATGTCGGTGGTGCCACGAATAACACAGCGTCCACGATTGGTGGC
AAAAATCACAATTGGTGCAATGGGAGATTCCAGGGACTTGTGTAGGTAGG
TGAAGGTCTCCAAATCAAGCATGTGAATTTCATCGATGAAGAGAACTCCG
GGAACCAGCTCGGCTATGCCCTGGTCAATGTACTTGTTTACCACCTTGTT
GATCTCCATGCGTAGTTTGTCAGTGATTTCAGTTTTCTTCGGCTTCATAA
GCTGGCCCATCATGGAGAGCACATCCTGGCCGCCCTGTGGACGAGCATTG
GCCACATCCAGATCGTGCAGAGTAACATCCTGGATAACCTCCTTCTTCTT
GTGGACATCGCCCTTGGGCAGCGGCACATACTCCTCGGTTTCGAGATCAA
ACTCAGTGGCAAAGGTGTCACTGCGACCCTGACGCTTTACGGCCCCCCTG
TTGGCCTCTATGTAGATGACATCGCCCACCTCCCCCTTTTCCTTTTGCAA
GGCATCAAAGATGCTGGGATCCAGCTTGAGCTG
BS05101.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4003-PA | 1371 | pont-RA | 505..1371 | 883..17 | 4260 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-RA | 1659 | CG4003-RA | 725..1591 | 883..17 | 4290 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10263476..10263831 | 372..17 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 10262847..10263159 | 883..571 | 1520 | 99 | Minus |
3R | 32079331 | 3R | 10263216..10263415 | 571..372 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:17:35 has no hits.
BS05101.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:50 Download gff for
BS05101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-PA | 505..1371 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:25 Download gff for
BS05101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4003-PA | 505..1371 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:16:55 Download gff for
BS05101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 725..1595 | 10..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:14 Download gff for
BS05101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 725..1595 | 10..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:14 Download gff for
BS05101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10262847..10263159 | 571..883 | 99 | -> | Minus |
3R | 10263217..10263415 | 372..570 | 100 | -> | Minus |
3R | 10263477..10263835 | 10..371 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:16:55 Download gff for
BS05101.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6088569..6088881 | 571..883 | 99 | -> | Minus |
arm_3R | 6088939..6089137 | 372..570 | 100 | -> | Minus |
arm_3R | 6089199..6089557 | 10..371 | 99 | | Minus |
BS05101.5prime Sequence
812 bp (807 high quality bases) assembled on 2005-12-02
> BS05101.5prime
GAAGTTATCAGTCGACATGAAGATCGAGGAAGTCAAGAGCACCGTGCGCA
CCCAACGCATCGCAGCCCACAGCCATGTGAAGGGATTGGGCCTGGACGAG
GTTGGAGCTGCCGTGCACAGTGCAGCCGGACTGGTGGGTCAGAAGGCGGC
ACGCGAGGCAGCCGGCATTGTGGTGGACCTCATCAAATCGAAAAAGATGG
CCGGACGAGCGCTTCTGCTGGCTGGGCCACCAGGCACGGGCAAAACCGCC
ATTGCTCTGGCCATTGCCCAGGAGCTGGGTAACAAAGTGCCCTTCTGTCC
CATGGTCGGATCGGAGGTATTCAGCAATGAGATCAAGAAGACCGAGGTGC
TAATGGAGAATTTCCGGCGCTCCATTGGTCTGCGCATTCGTGAGACCAAA
GAGGTGTACGAGGGCGAGGTTACGGAACTCACGCCCGTGGAAACCGAGAA
TCCTATGGGTGGCTATGGCAAGACTATCAGCAATGTCGTCATCGGCTTGA
AAACAGCCAAGGGAACCAAGCAGCTCAAGCTGGATCCCAGCATCTTTGAT
GCCTTGCAAAAGGAAAAGGTGGAGGTGGGCGATGTCATCTACATAGAGGC
CAACAGTGGTGCCGTAAAGCGTCAGGGTCGCAGTGACACCTTTGCCACTG
AGTTTGATCTCGAAACCGAGGAGTATGTGCCGCTGCCCAAGGGCGATGTC
CACAAGAAGAAGGAGGTTATCCAGGATGTTACTCTGCACGATCTGGATGT
GGCCAATGCTCGTCCACAGGGCGGCCAGGATGTGCTCTCCATGATGGGCC
AGCTTATGAAGC
BS05101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4003-PA | 1371 | pont-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-RA | 1659 | CG4003-RA | 220..1016 | 16..812 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10262342..10263138 | 16..812 | 3985 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:45:57 has no hits.
BS05101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:51 Download gff for
BS05101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:26 Download gff for
BS05101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4003-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:20:34 Download gff for
BS05101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 210..1016 | 5..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:20 Download gff for
BS05101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 210..1016 | 5..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:20 Download gff for
BS05101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10262332..10263138 | 5..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:20:34 Download gff for
BS05101.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6088054..6088860 | 5..812 | 99 | | Plus |
BS05101.complete Sequence
1403 bp (1403 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ638779
> BS05101.complete
GAAGTTATCAGTCGACATGAAGATCGAGGAAGTCAAGAGCACCGTGCGCA
CCCAACGCATCGCAGCCCACAGCCATGTGAAGGGATTGGGCCTGGACGAG
GTTGGAGCTGCCGTGCACAGTGCAGCCGGACTGGTGGGTCAGAAGGCGGC
ACGCGAGGCAGCCGGCATTGTGGTGGACCTCATCAAATCGAAAAAGATGG
CCGGACGAGCGCTTCTGCTGGCTGGGCCACCAGGCACGGGCAAAACCGCC
ATTGCTCTGGCCATTGCCCAGGAGCTGGGTAACAAAGTGCCCTTCTGTCC
CATGGTCGGATCGGAGGTATTCAGCAATGAGATCAAGAAGACCGAGGTGC
TAATGGAGAATTTCCGGCGCTCCATTGGTCTGCGCATTCGTGAGACCAAA
GAGGTGTACGAGGGCGAGGTTACGGAACTCACGCCCGTGGAAACCGAGAA
TCCTATGGGTGGCTATGGCAAGACTATCAGCAATGTCGTCATCGGCTTGA
AAACAGCCAAGGGAACCAAGCAGCTCAAGCTGGATCCCAGCATCTTTGAT
GCCTTGCAAAAGGAAAAGGTGGAGGTGGGCGATGTCATCTACATAGAGGC
CAACAGTGGTGCCGTAAAGCGTCAGGGTCGCAGTGACACCTTTGCCACTG
AGTTTGATCTCGAAACCGAGGAGTATGTGCCGCTGCCCAAGGGCGATGTC
CACAAGAAGAAGGAGGTTATCCAGGATGTTACTCTGCACGATCTGGATGT
GGCCAATGCTCGTCCACAGGGCGGCCAGGATGTGCTCTCCATGATGGGCC
AGCTTATGAAGCCGAAGAAAACTGAAATCACTGACAAACTACGCATGGAG
ATCAACAAGGTGGTAAACAAGTACATTGACCAGGGCATAGCCGAGCTGGT
TCCCGGAGTTCTCTTCATCGATGAAATTCACATGCTTGATTTGGAGACCT
TCACCTACCTACACAAGTCCCTGGAATCTCCCATTGCACCAATTGTGATT
TTTGCCACCAATCGTGGACGCTGTGTTATTCGTGGCACCACCGACATAGT
TTCGCCGCACGGAATTCCGCTAGATCTGCTCGATCGTTTGCTGATCATCC
GCACACTACTCTACTCCACTGCCGACATGGAGCAGATAATCAAGTTGCGC
GCCCAGACCGAGGGACTGCAGCTGGAGGAGAACGCATTTACACGTCTCAG
CGAGATTGGAACCAGCTCCACGCTGCGCTACGCCGTCCAGCTGCTGACCC
CGGCTCATCAGATGTGCAAGGTGAACGGACGCAACCAGATCAGCAAGGAT
GATATCGAGGATGTGCACTCGCTCTTCCTTGACGCCAAGCGCTCCTCGAA
GCATTTGTCCGAAAAGAACAATAAGTTTATGTTGTAAAAGCTTTCTAGAC
CAT
BS05101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-RA | 1371 | CG4003-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-RA | 1659 | CG4003-RA | 220..1591 | 16..1387 | 6860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10262342..10263159 | 16..833 | 4090 | 100 | Plus |
3R | 32079331 | 3R | 10263476..10263831 | 1032..1387 | 1780 | 100 | Plus |
3R | 32079331 | 3R | 10263216..10263415 | 833..1032 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:52:20 has no hits.
BS05101.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:03 Download gff for
BS05101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 1..1371 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:23 Download gff for
BS05101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 221..1606 | 5..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:09 Download gff for
BS05101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 221..1589 | 17..1385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:03 Download gff for
BS05101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 221..1606 | 5..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:53 Download gff for
BS05101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pont-RA | 221..1589 | 17..1385 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:53 Download gff for
BS05101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10262343..10263159 | 17..833 | 100 | -> | Plus |
3R | 10263217..10263415 | 834..1032 | 100 | -> | Plus |
3R | 10263477..10263829 | 1033..1385 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:09 Download gff for
BS05101.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6088065..6088881 | 17..833 | 100 | -> | Plus |
arm_3R | 6088939..6089137 | 834..1032 | 100 | -> | Plus |
arm_3R | 6089199..6089551 | 1033..1385 | 100 | | Plus |
BS05101.pep Sequence
Translation from 16 to 1386
> BS05101.pep
MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAG
IVVDLIKSKKMAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSE
VFSNEIKKTEVLMENFRRSIGLRIRETKEVYEGEVTELTPVETENPMGGY
GKTISNVVIGLKTAKGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSGAV
KRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTLHDLDVANARP
QGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF
IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGI
PLDLLDRLLIIRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTS
STLRYAVQLLTPAHQMCKVNGRNQISKDDIEDVHSLFLDAKRSSKHLSEK
NNKFML*
BS05101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pont-PA | 456 | CG4003-PA | 1..456 | 1..456 | 2285 | 100 | Plus |
rept-PB | 481 | CG9750-PB | 8..447 | 5..455 | 980 | 45.3 | Plus |
rept-PC | 481 | CG9750-PC | 8..447 | 5..455 | 980 | 45.3 | Plus |
rept-PA | 481 | CG9750-PA | 8..447 | 5..455 | 980 | 45.3 | Plus |