Clone Sequence Records
BS05106.3prime Sequence
854 bp (708 high quality bases) assembled on 2005-12-02
> BS05106.3prime
ATGGTCTAGAAAGCTTTTACATATCCAGGCCAACGATGTTGGCCGTGTCG
TAGGACACCAGCCCGGCTACGGATTCCCGTGCGGACTGGCCGCGCCTCTC
GTGGATGACCCGGTGGTTACGCAGTTTGTACGCCTGCGGGAATCCCTTGC
CGCACACATCGCAGACGTGCGGCTTCTCTCCCGTATGAATCATTTTGTGG
AACTTCAAGGTGTTGGTGTAAGTGAATGTCTTGTGGCAAACATCGCACTC
GTAGGGTCGCTCGTTGGTGTGGATTCTGTGGTGCTTGTTACGCGTGGACA
AGTCGGCGAAGGCTGCCGGGCAATAGCTGCATTTGTACGGCCGATTTCCG
GTGTGGGTGTTCATGTGGCGTGCCAGCTGCTGAGCCTGGGCGAAGCAATG
ACCACAGATCTCGCACTCGTGCGGCTTCACGCCGGAGTGGACCTTGATGT
GCTCGGTAAGGCGACTCTGGGAGGGATACATGTTGCCGCAGACATCGCAG
ATGTACTTGAACTCCTTCTTGTCGCCAAGAAGGATCTTGTGGCCGCCTTT
GGTTTTAATGCCGGAATGCTTGCGCGCCAGCACCTCGCCAATCGAGATGT
CCTTCTCGGATTTGATGCTCATTTTGCTGCCAGCCGAATCACTGTTACCC
CGCCGTACCTTAAGTGGATTGCCGCGGTCAGTTGTCTTGGAGGTACTCGA
TTCTACAGCCACCGAGGCCGTCGATGTAGCTGACCTGCGGGGATTCACTC
TCCGCTTGGTGGCATTCCGCGCATGGATGGACGCGCGAACGCTTTTTGAG
GGAACGAACTCCTCTTCGGTTGAGTTCAGATCGACTTCCGCATCATCCTC
GTGG
BS05106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-PA | 1566 | CG4936-RA | 729..1566 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-RA | 1824 | CG4936-RA | 846..1684 | 854..16 | 4195 | 100 | Minus |
| CG10889-RA | 2176 | CG10889-RA | 1867..2015 | 16..164 | 745 | 100 | Plus |
| trem-RA | 1525 | CG4413-RA | 913..1299 | 505..119 | 570 | 76.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20032722..20033166 | 854..410 | 2225 | 100 | Minus |
| 3R | 32079331 | 3R | 20034042..20034190 | 164..16 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 20033324..20033458 | 410..276 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 20033513..20033626 | 278..165 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 20029894..20030004 | 168..278 | 240 | 81.1 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:32:49 has no hits.
BS05106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:57 Download gff for
BS05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-PA | 729..1566 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:33 Download gff for
BS05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-PA | 729..1566 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:51:15 Download gff for
BS05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 849..1694 | 6..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:42:25 Download gff for
BS05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 846..1691 | 6..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:42:25 Download gff for
BS05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20032722..20033165 | 411..854 | 100 | -> | Minus |
| 3R | 20033324..20033458 | 276..410 | 100 | -> | Minus |
| 3R | 20033516..20033626 | 165..275 | 100 | -> | Minus |
| 3R | 20034042..20034197 | 6..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:51:15 Download gff for
BS05106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15858444..15858887 | 411..854 | 100 | -> | Minus |
| arm_3R | 15859046..15859180 | 276..410 | 100 | -> | Minus |
| arm_3R | 15859238..15859348 | 165..275 | 100 | -> | Minus |
| arm_3R | 15859764..15859919 | 6..164 | 97 | | Minus |
BS05106.5prime Sequence
876 bp (773 high quality bases) assembled on 2005-11-29
> BS05106.5prime
GAAGTTATCAGTCGACATGAGAGACTCGGCAGCACATGCGAGTCCGGCGG
CAGCGGCAACGAGCACGCAGAAGTGGATCGTTTGCCGGGTTTGCCTGCAG
CAGCCCAAGGAGCCCATGGCCAGCATTTTCAACGACGATTCGGAAAAGGA
TCTGACCCACATGATTCGCGAGTGCGGCGGAGTGCCCATCAAACAGTTCG
ATCACTATCCGGACAAGATATGCGAGAAGTGCTTCAAGGTGCTGAAAATG
GCATTTAAGTTTCGAGAGACCTGCCAAAGATCGTACGGCCATCTGCGCCA
GTTCGTTGGACCCGTAGAGGTGGAGCAGCGACCACCGGAGAAAAAGGGCT
CAGAGACAGCCACCAAGCTGGAGCCGGATGTCGATCCCGATGAGGCGGAG
CAGGAGCCAGAGCATGACGAGGAAGACGAGGATGTGGACCTGGACGAGAG
CCACTATGCCGAGGCGGACGATGCCGCCGAAACGCAGGGTGGTGTCTTCC
ATGACGAGATTGAGGATGGTATCCTCGTTGAGCTGGAAAAGGATCGGATT
GTGCACGTGAAGAACGAGCAGGTGGAGGAGGACGGCATAATCGAGGAGGT
TTATGACGTGTATGAGACGTACGAGGGCGACCTCATCCCAGATCAGGGCT
ATGACCACGAGATGGCCGATCAAGCCCTGTCCGAGTTATCTGCCGAAATC
GAATACCTGGACCAGGTCGAGCATGATCAGTTGACCGAAAGTGCCCACGA
GGATGATGCGGAAGTCGATCTGAACTCAACCGAAGAGGAGTTCGTTCCCT
CAAAAAGCGTTCGCGCGTCCATCCATGCGCGGAATGCCACCAAGCGGAGA
GTGAATCCCCGCAGGTCAGCTACATC
BS05106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-PA | 1566 | CG4936-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-RA | 1824 | CG4936-RA | 118..977 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20032165..20032853 | 188..876 | 3445 | 100 | Plus |
| 3R | 32079331 | 3R | 20031940..20032110 | 17..187 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:08:41 has no hits.
BS05106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:01:58 Download gff for
BS05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:35 Download gff for
BS05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:41 Download gff for
BS05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 113..980 | 8..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:24 Download gff for
BS05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 110..977 | 8..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:24 Download gff for
BS05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20031932..20032110 | 8..187 | 98 | -> | Plus |
| 3R | 20032165..20032853 | 188..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:41 Download gff for
BS05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15857654..15857832 | 8..187 | 98 | -> | Plus |
| arm_3R | 15857887..15858575 | 188..876 | 100 | | Plus |
BS05106.complete Sequence
1598 bp (1598 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635057
> BS05106.complete
GAAGTTATCAGTCGACATGAGAGACTCGGCAGCACATGCGAGTCCGGCGG
CAGCGGCAACGAGCACGCAGAAGTGGATCGTTTGCCGGGTTTGCCTGCAG
CAGCCCAAGGAGCCCATGGCCAGCATTTTCAACGACGATTCGGAAAAGGA
TCTGACCCACATGATTCGCGAGTGCGGCGGAGTGCCCATCAAACAGTTCG
ATCACTATCCGGACAAGATATGCGAGAAGTGCTTCAAGGTGCTGAAAATG
GCATTTAAGTTTCGAGAGACCTGCCAAAGATCGTACGGCCATCTGCGCCA
GTTCGTTGGACCCGTAGAGGTGGAGCAGCGACCACCGGAGAAAAAGGGCT
CAGAGACAGCCACCAAGCTGGAGCCGGATGTCGATCCCGATGAGGCGGAG
CAGGAGCCAGAGCATGACGAGGAAGACGAGGATGTGGACCTGGACGAGAG
CCACTATGCCGAGGCGGACGATGCCGCCGAAACGCAGGGTGGTGTCTTCC
ATGACGAGATTGAGGATGGTATCCTCGTTGAGCTGGAAAAGGATCGGATT
GTGCACGTGAAGAACGAGCAGGTGGAGGAGGACGGCATAATCGAGGAGGT
TTATGACGTGTATGAGACGTACGAGGGCGACCTCATCCCAGATCAGGGCT
ATGACCACGAGATGGCCGATCAAGCCCTGTCCGAGTTATCTGCCGAAATC
GAATACCTGGACCAGGTCGAGCATGATCAGTTGACCGAAAGTGCCCACGA
GGATGATGCGGAAGTCGATCTGAACTCAACCGAAGAGGAGTTCGTTCCCT
CAAAAAGCGTTCGCGCGTCCATCCATGCGCGGAATGCCACCAAGCGGAGA
GTGAATCCCCGCAGGTCAGCTACATCGACGGCCTCGGTGGCTGTAGAATC
GAGTACCTCCAAGACAACTGACCGCGGCAATCCACTTAAGGTACGGCGGG
GTAACAGTGATTCGGCTGGCAGCAAAATGAGCATCAAATCCGAGAAGGAC
ATCTCGATTGGCGAGGTGCTGGCGCGCAAGCATTCCGGCATTAAAACCAA
AGGCGGCCACAAGATCCTTCTTGGCGACAAGAAGGAGTTCAAGTACATCT
GCGATGTCTGCGGCAACATGTATCCCTCCCAGAGTCGCCTTACCGAGCAC
ATCAAGGTCCACTCCGGCGTGAAGCCGCACGAGTGCGAGATCTGTGGTCA
TTGCTTCGCCCAGGCTCAGCAGCTGGCACGCCACATGAACACCCACACCG
GAAATCGGCCGTACAAATGCAGCTATTGCCCGGCAGCCTTCGCCGACTTG
TCCACGCGTAACAAGCACCACAGAATCCACACCAACGAGCGACCCTACGA
GTGCGATGTTTGCCACAAGACATTCACTTACACCAACACCTTGAAGTTCC
ACAAAATGATTCATACGGGAGAGAAGCCGCACGTCTGCGATGTGTGCGGC
AAGGGATTCCCGCAGGCGTACAAACTGCGTAACCACCGGGTCATCCACGA
GAGGCGCGGCCAGTCCGCACGGGAATCCGTAGCCGGGCTGGTGTCCTACG
ACACGGCCAACATCGTTGGCCTGGATATGTAAAAGCTTTCTAGACCAT
BS05106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-RA | 1566 | CG4936-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| trem-RA | 1320 | CG4413-PA | 814..1200 | 1094..1480 | 570 | 76.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-RA | 1824 | CG4936-RA | 118..1684 | 17..1583 | 7835 | 100 | Plus |
| CG10889-RA | 2176 | CG10889-RA | 1867..2015 | 1583..1435 | 745 | 100 | Minus |
| trem-RA | 1525 | CG4413-RA | 913..1299 | 1094..1480 | 570 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20032165..20033166 | 188..1189 | 5010 | 100 | Plus |
| 3R | 32079331 | 3R | 20031940..20032110 | 17..187 | 855 | 100 | Plus |
| 3R | 32079331 | 3R | 20034042..20034190 | 1435..1583 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 20033324..20033458 | 1189..1323 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 20033513..20033626 | 1321..1434 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 20029894..20030004 | 1431..1321 | 240 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:55:44 has no hits.
BS05106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:04 Download gff for
BS05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 1..1566 | 17..1582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:25 Download gff for
BS05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 113..1694 | 8..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:34 Download gff for
BS05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 121..1684 | 17..1580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:04 Download gff for
BS05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 113..1694 | 8..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:13 Download gff for
BS05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4936-RA | 118..1681 | 17..1580 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:13 Download gff for
BS05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20031940..20032110 | 17..187 | 100 | -> | Plus |
| 3R | 20032165..20033165 | 188..1188 | 100 | -> | Plus |
| 3R | 20033324..20033458 | 1189..1323 | 100 | -> | Plus |
| 3R | 20033516..20033626 | 1324..1434 | 100 | -> | Plus |
| 3R | 20034042..20034187 | 1435..1580 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:34 Download gff for
BS05106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15857662..15857832 | 17..187 | 100 | -> | Plus |
| arm_3R | 15857887..15858887 | 188..1188 | 100 | -> | Plus |
| arm_3R | 15859046..15859180 | 1189..1323 | 100 | -> | Plus |
| arm_3R | 15859238..15859348 | 1324..1434 | 100 | -> | Plus |
| arm_3R | 15859764..15859909 | 1435..1580 | 100 | | Plus |
BS05106.pep Sequence
Translation from 16 to 1581
> BS05106.pep
MRDSAAHASPAAAATSTQKWIVCRVCLQQPKEPMASIFNDDSEKDLTHMI
RECGGVPIKQFDHYPDKICEKCFKVLKMAFKFRETCQRSYGHLRQFVGPV
EVEQRPPEKKGSETATKLEPDVDPDEAEQEPEHDEEDEDVDLDESHYAEA
DDAAETQGGVFHDEIEDGILVELEKDRIVHVKNEQVEEDGIIEEVYDVYE
TYEGDLIPDQGYDHEMADQALSELSAEIEYLDQVEHDQLTESAHEDDAEV
DLNSTEEEFVPSKSVRASIHARNATKRRVNPRRSATSTASVAVESSTSKT
TDRGNPLKVRRGNSDSAGSKMSIKSEKDISIGEVLARKHSGIKTKGGHKI
LLGDKKEFKYICDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQA
QQLARHMNTHTGNRPYKCSYCPAAFADLSTRNKHHRIHTNERPYECDVCH
KTFTYTNTLKFHKMIHTGEKPHVCDVCGKGFPQAYKLRNHRVIHERRGQS
ARESVAGLVSYDTANIVGLDM*
BS05106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4936-PA | 521 | CG4936-PA | 1..521 | 1..521 | 2781 | 100 | Plus |
| trem-PA | 439 | CG4413-PA | 5..409 | 16..497 | 819 | 40 | Plus |
| CG4854-PA | 319 | CG4854-PA | 178..314 | 360..496 | 460 | 56.2 | Plus |
| CG14711-PA | 377 | CG14711-PA | 3..376 | 19..502 | 451 | 27.6 | Plus |
| CG14710-PB | 415 | CG14710-PB | 10..392 | 23..490 | 424 | 26.4 | Plus |
