Clone Sequence Records
BS05109.3prime Sequence
923 bp (748 high quality bases) assembled on 2005-12-02
> BS05109.3prime
ATGGTCTAGAAAGCTTTTACTCGGCGGCGGCATTGATGGTGATAGTCTTG
CCCTTGGGATCGTCGAAGCGGTCCATCGTGTTGATGTCCATCATCCAGCA
GACGCCGACGAACATGATGACCAGCAGTAGGGCGACCACAAACAGTCCCA
TCAGGATACCGGGCGTCACGAAGCCCACACAGTCCCAGGAGTCGCCGAAG
GGAAAGTCCTCCTTGTACGTACCATCGAAGGGAGCCTGCAGCTGCAGGGA
CTTGAAGCTCAGGGTGTTGTACATGTTGTTGACGGCCGCGGACTCGAGGG
TGAGGTTGCCGCACGAGTAAGAGAACGTGGTTGGGGCATTCACGCCGCTG
GAGCGGAAGTTGTTGTTGTCGTAGACCAAATTGCTCAGACTAAAGTATCC
GCCATTATAAACAACGTCAAAGGTGATTGGCTTGTCGGCGACAGATGTGT
CCATAACAACGGATAGCTTGGTAGAGCTAGAGTTGGTGAGCTTGAGGTCG
GTGACGGTGATGGGGTTGCCGTTGTAGAGCAGGGCAGTGTAGAAGATCTG
AAACTGATTGGTCGACTTCCACATGATGCCACCGGTTGTGGCGGCGGTGT
CACGGCGGGTACGACGCTGCACCACAGGAGCCGTGGAGGGGGCGGCCAGG
TACAGATAAGCCACCTTGCACTCGAACTGCTTGCTGATAGCAGCTATGGC
GGCGTCATGTGACTCCAGACTGGCCTCCCGGCTCTCGGCGGCGTCCTCGA
AGGTCACAAACAGGGCCGTACCTACGGCACACTTGGCCGGCGTGGTCAGC
TTTCCACTGGCATCGATGGAGTTGTGCTCGCGCTTGGCGGCCACTGAGCG
CAGTGCCTCCGAGGGGTTCTCCACGCTGGTGTAGTAGGTCTTGGGGGCTC
ACTCCCTGCACCTGGGCGTAGCA
BS05109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8029-PB | 1140 | CG8029-RB | 261..1140 | 896..17 | 4400 | 100 | Minus |
CG8029-PA | 1140 | CG8029-RA | 261..1140 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-RA | 1894 | CG8029-RA | 439..1345 | 923..16 | 4500 | 99.8 | Minus |
VhaAC45-RB | 1925 | CG8029-RB | 351..1257 | 923..16 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9208416..9209106 | 706..16 | 3455 | 100 | Minus |
2R | 25286936 | 2R | 9208128..9208344 | 923..706 | 1025 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:01:11 has no hits.
BS05109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:02 Download gff for
BS05109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-PB | 236..1140 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:40 Download gff for
BS05109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-PA | 236..1140 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:13:46 Download gff for
BS05109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 352..1257 | 16..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:56:31 Download gff for
BS05109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 352..1257 | 16..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:56:31 Download gff for
BS05109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9208129..9208344 | 706..922 | 99 | -> | Minus |
2R | 9208417..9209106 | 16..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:13:46 Download gff for
BS05109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5095634..5095849 | 706..922 | 99 | -> | Minus |
arm_2R | 5095922..5096611 | 16..705 | 100 | | Minus |
BS05109.5prime Sequence
823 bp (738 high quality bases) assembled on 2005-11-29
> BS05109.5prime
GAAGTTATCAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCA
TTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAAC
AGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGA
GCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAA
ATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCC
TGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGT
GGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACA
ACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTA
GGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGC
CAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCG
AGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTG
GTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCAT
GTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACA
ACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCT
ACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCAC
CTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCT
ACGACAACAACAACTTCCGCTCC
BS05109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8029-PB | 1140 | CG8029-RB | 1..807 | 17..823 | 4035 | 100 | Plus |
CG8029-PA | 1140 | CG8029-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-RA | 1894 | CG8029-RA | 205..1011 | 17..823 | 4035 | 100 | Plus |
VhaAC45-RB | 1925 | CG8029-RB | 117..923 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9208416..9208772 | 467..823 | 1785 | 100 | Plus |
2R | 25286936 | 2R | 9208083..9208344 | 206..467 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 9207910..9208016 | 99..205 | 535 | 100 | Plus |
2R | 25286936 | 2R | 9207765..9207850 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:42:58 has no hits.
BS05109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:03 Download gff for
BS05109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-PB | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:41 Download gff for
BS05109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:46 Download gff for
BS05109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 110..923 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:55 Download gff for
BS05109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 110..923 | 9..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:55 Download gff for
BS05109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9207758..9207850 | 9..102 | 96 | -> | Plus |
2R | 9207914..9208016 | 103..205 | 100 | -> | Plus |
2R | 9208083..9208344 | 206..467 | 100 | -> | Plus |
2R | 9208417..9208772 | 468..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:46 Download gff for
BS05109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5095263..5095355 | 9..102 | 96 | -> | Plus |
arm_2R | 5095419..5095521 | 103..205 | 100 | -> | Plus |
arm_2R | 5095588..5095849 | 206..467 | 100 | -> | Plus |
arm_2R | 5095922..5096277 | 468..823 | 100 | | Plus |
BS05109.complete Sequence
1172 bp (1172 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635058
> BS05109.complete
GAAGTTATCAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCA
TTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAAC
AGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGA
GCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAA
ATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCC
TGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGT
GGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACA
ACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTA
GGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGC
CAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCG
AGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTG
GTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCAT
GTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACA
ACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCT
ACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCAC
CTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCT
ACGACAACAACAACTTCCGCTCCAGCGGCGTGAATGCCCCAACCACGTTC
TCTTACTCGTGCGGCAACCTCACCCTCGAGTCCGCGGCCGTCAACAACAT
GTACAACACCCTGAGCTTCAAGTCCCTGCAGCTGCAGGCTCCCTTCGATG
GTACGTACAAGGAGGACTTTCCCTTCGGCGACTCCTGGGACTGTGTGGGC
TTCGTGACGCCCGGTATCCTGATGGGACTGTTTGTGGTCGCCCTACTGCT
GGTCATCATGTTCGTCGGCGTCTGCTGGATGATGGACATCAACACGATGG
ACCGCTTCGACGATCCCAAGGGCAAGACTATCACCATCAATGCCGCCGCC
GAGTAAAAGCTTTCTAGACCAT
BS05109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-RA | 1140 | CG8029-PA | 1..1140 | 17..1156 | 5700 | 100 | Plus |
VhaAC45-RB | 1140 | CG8029-PB | 1..1140 | 17..1156 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-RA | 1894 | CG8029-RA | 205..1345 | 17..1157 | 5705 | 100 | Plus |
VhaAC45-RB | 1925 | CG8029-RB | 117..1257 | 17..1157 | 5705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9208416..9209106 | 467..1157 | 3455 | 100 | Plus |
2R | 25286936 | 2R | 9208083..9208344 | 206..467 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 9207910..9208016 | 99..205 | 535 | 100 | Plus |
2R | 25286936 | 2R | 9207765..9207850 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:26:06 has no hits.
BS05109.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:05 Download gff for
BS05109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-RA | 1..1140 | 17..1156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:26 Download gff for
BS05109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-RA | 196..1343 | 9..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:55 Download gff for
BS05109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 122..1254 | 22..1154 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:05 Download gff for
BS05109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8029-RA | 196..1343 | 9..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:54 Download gff for
BS05109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC45-RB | 122..1254 | 22..1154 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:54 Download gff for
BS05109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9207770..9207850 | 22..102 | 100 | -> | Plus |
2R | 9207914..9208016 | 103..205 | 100 | -> | Plus |
2R | 9208083..9208344 | 206..467 | 100 | -> | Plus |
2R | 9208417..9209103 | 468..1154 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:55 Download gff for
BS05109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5095419..5095521 | 103..205 | 100 | -> | Plus |
arm_2R | 5095588..5095849 | 206..467 | 100 | -> | Plus |
arm_2R | 5095275..5095355 | 22..102 | 100 | -> | Plus |
arm_2R | 5095922..5096608 | 468..1154 | 100 | | Plus |
BS05109.pep Sequence
Translation from 16 to 1155
> BS05109.pep
MLWKSLIALCVIGAAVAEQTPVFLWGANSVAKPSLKTVSQVEFAEQLAAL
LEDHMVVAFEENGLSSKDFLCSNSQAQSCYAQLQGVSPKTYYTSVENPSE
ALRSVAAKREHNSIDASGKLTTPAKCAVGTALFVTFEDAAESREASLESH
DAAIAAISKQFECKVAYLYLAAPSTAPVVQRRTRRDTAATTGGIMWKSTN
QFQIFYTALLYNGNPITVTDLKLTNSSSTKLSVVMDTSVADKPITFDVVY
NGGYFSLSNLVYDNNNFRSSGVNAPTTFSYSCGNLTLESAAVNNMYNTLS
FKSLQLQAPFDGTYKEDFPFGDSWDCVGFVTPGILMGLFVVALLLVIMFV
GVCWMMDINTMDRFDDPKGKTITINAAAE*
BS05109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC45-PA | 379 | CG8029-PA | 1..379 | 1..379 | 1943 | 100 | Plus |
VhaAC45-PB | 379 | CG8029-PB | 1..379 | 1..379 | 1943 | 100 | Plus |
CG5421-PB | 426 | CG5421-PB | 10..418 | 6..367 | 183 | 21.5 | Plus |
CG5421-PA | 426 | CG5421-PA | 10..418 | 6..367 | 183 | 21.5 | Plus |
CG31030-PA | 384 | CG31030-PA | 281..379 | 273..373 | 153 | 35 | Plus |