Clone BS05109 Report

Search the DGRC for BS05109

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:51
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptVhaAC45-RA
Protein status:BS05109.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05109.3prime Sequence

923 bp (748 high quality bases) assembled on 2005-12-02

> BS05109.3prime
ATGGTCTAGAAAGCTTTTACTCGGCGGCGGCATTGATGGTGATAGTCTTG
CCCTTGGGATCGTCGAAGCGGTCCATCGTGTTGATGTCCATCATCCAGCA
GACGCCGACGAACATGATGACCAGCAGTAGGGCGACCACAAACAGTCCCA
TCAGGATACCGGGCGTCACGAAGCCCACACAGTCCCAGGAGTCGCCGAAG
GGAAAGTCCTCCTTGTACGTACCATCGAAGGGAGCCTGCAGCTGCAGGGA
CTTGAAGCTCAGGGTGTTGTACATGTTGTTGACGGCCGCGGACTCGAGGG
TGAGGTTGCCGCACGAGTAAGAGAACGTGGTTGGGGCATTCACGCCGCTG
GAGCGGAAGTTGTTGTTGTCGTAGACCAAATTGCTCAGACTAAAGTATCC
GCCATTATAAACAACGTCAAAGGTGATTGGCTTGTCGGCGACAGATGTGT
CCATAACAACGGATAGCTTGGTAGAGCTAGAGTTGGTGAGCTTGAGGTCG
GTGACGGTGATGGGGTTGCCGTTGTAGAGCAGGGCAGTGTAGAAGATCTG
AAACTGATTGGTCGACTTCCACATGATGCCACCGGTTGTGGCGGCGGTGT
CACGGCGGGTACGACGCTGCACCACAGGAGCCGTGGAGGGGGCGGCCAGG
TACAGATAAGCCACCTTGCACTCGAACTGCTTGCTGATAGCAGCTATGGC
GGCGTCATGTGACTCCAGACTGGCCTCCCGGCTCTCGGCGGCGTCCTCGA
AGGTCACAAACAGGGCCGTACCTACGGCACACTTGGCCGGCGTGGTCAGC
TTTCCACTGGCATCGATGGAGTTGTGCTCGCGCTTGGCGGCCACTGAGCG
CAGTGCCTCCGAGGGGTTCTCCACGCTGGTGTAGTAGGTCTTGGGGGCTC
ACTCCCTGCACCTGGGCGTAGCA

BS05109.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8029-PB 1140 CG8029-RB 261..1140 896..17 4400 100 Minus
CG8029-PA 1140 CG8029-RA 261..1140 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-RA 1894 CG8029-RA 439..1345 923..16 4500 99.8 Minus
VhaAC45-RB 1925 CG8029-RB 351..1257 923..16 4500 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9208416..9209106 706..16 3455 100 Minus
2R 25286936 2R 9208128..9208344 923..706 1025 99.1 Minus
Blast to na_te.dros performed on 2015-02-02 19:01:11 has no hits.

BS05109.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:02 Download gff for BS05109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8029-PB 236..1140 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:40 Download gff for BS05109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8029-PA 236..1140 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:13:46 Download gff for BS05109.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 352..1257 16..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:56:31 Download gff for BS05109.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 352..1257 16..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:56:31 Download gff for BS05109.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9208129..9208344 706..922 99 -> Minus
2R 9208417..9209106 16..705 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:13:46 Download gff for BS05109.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5095634..5095849 706..922 99 -> Minus
arm_2R 5095922..5096611 16..705 100   Minus

BS05109.5prime Sequence

823 bp (738 high quality bases) assembled on 2005-11-29

> BS05109.5prime
GAAGTTATCAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCA
TTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAAC
AGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGA
GCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAA
ATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCC
TGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGT
GGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACA
ACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTA
GGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGC
CAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCG
AGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTG
GTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCAT
GTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACA
ACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCT
ACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCAC
CTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCT
ACGACAACAACAACTTCCGCTCC

BS05109.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8029-PB 1140 CG8029-RB 1..807 17..823 4035 100 Plus
CG8029-PA 1140 CG8029-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-RA 1894 CG8029-RA 205..1011 17..823 4035 100 Plus
VhaAC45-RB 1925 CG8029-RB 117..923 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9208416..9208772 467..823 1785 100 Plus
2R 25286936 2R 9208083..9208344 206..467 1310 100 Plus
2R 25286936 2R 9207910..9208016 99..205 535 100 Plus
2R 25286936 2R 9207765..9207850 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:42:58 has no hits.

BS05109.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:03 Download gff for BS05109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8029-PB 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:27:41 Download gff for BS05109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8029-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:46 Download gff for BS05109.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 110..923 9..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:55 Download gff for BS05109.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 110..923 9..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:55 Download gff for BS05109.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9207758..9207850 9..102 96 -> Plus
2R 9207914..9208016 103..205 100 -> Plus
2R 9208083..9208344 206..467 100 -> Plus
2R 9208417..9208772 468..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:46 Download gff for BS05109.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5095263..5095355 9..102 96 -> Plus
arm_2R 5095419..5095521 103..205 100 -> Plus
arm_2R 5095588..5095849 206..467 100 -> Plus
arm_2R 5095922..5096277 468..823 100   Plus

BS05109.complete Sequence

1172 bp (1172 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635058

> BS05109.complete
GAAGTTATCAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCA
TTGGGGCTGCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAAC
AGTGTGGCGAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGA
GCAGTTGGCTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAA
ATGGCCTGAGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCC
TGCTACGCCCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGT
GGAGAACCCCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACA
ACTCCATCGATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTA
GGTACGGCCCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGC
CAGTCTGGAGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCG
AGTGCAAGGTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTG
GTGCAGCGTCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCAT
GTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACA
ACGGCAACCCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCT
ACCAAGCTATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCAC
CTTTGACGTTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCT
ACGACAACAACAACTTCCGCTCCAGCGGCGTGAATGCCCCAACCACGTTC
TCTTACTCGTGCGGCAACCTCACCCTCGAGTCCGCGGCCGTCAACAACAT
GTACAACACCCTGAGCTTCAAGTCCCTGCAGCTGCAGGCTCCCTTCGATG
GTACGTACAAGGAGGACTTTCCCTTCGGCGACTCCTGGGACTGTGTGGGC
TTCGTGACGCCCGGTATCCTGATGGGACTGTTTGTGGTCGCCCTACTGCT
GGTCATCATGTTCGTCGGCGTCTGCTGGATGATGGACATCAACACGATGG
ACCGCTTCGACGATCCCAAGGGCAAGACTATCACCATCAATGCCGCCGCC
GAGTAAAAGCTTTCTAGACCAT

BS05109.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-RA 1140 CG8029-PA 1..1140 17..1156 5700 100 Plus
VhaAC45-RB 1140 CG8029-PB 1..1140 17..1156 5700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-RA 1894 CG8029-RA 205..1345 17..1157 5705 100 Plus
VhaAC45-RB 1925 CG8029-RB 117..1257 17..1157 5705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9208416..9209106 467..1157 3455 100 Plus
2R 25286936 2R 9208083..9208344 206..467 1310 100 Plus
2R 25286936 2R 9207910..9208016 99..205 535 100 Plus
2R 25286936 2R 9207765..9207850 17..102 430 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:26:06 has no hits.

BS05109.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:05 Download gff for BS05109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 1..1140 17..1156 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:26 Download gff for BS05109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 196..1343 9..1157 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:55 Download gff for BS05109.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 122..1254 22..1154 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:05 Download gff for BS05109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8029-RA 196..1343 9..1157 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:54 Download gff for BS05109.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC45-RB 122..1254 22..1154 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:54 Download gff for BS05109.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9207770..9207850 22..102 100 -> Plus
2R 9207914..9208016 103..205 100 -> Plus
2R 9208083..9208344 206..467 100 -> Plus
2R 9208417..9209103 468..1154 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:55 Download gff for BS05109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5095419..5095521 103..205 100 -> Plus
arm_2R 5095588..5095849 206..467 100 -> Plus
arm_2R 5095275..5095355 22..102 100 -> Plus
arm_2R 5095922..5096608 468..1154 100   Plus

BS05109.pep Sequence

Translation from 16 to 1155

> BS05109.pep
MLWKSLIALCVIGAAVAEQTPVFLWGANSVAKPSLKTVSQVEFAEQLAAL
LEDHMVVAFEENGLSSKDFLCSNSQAQSCYAQLQGVSPKTYYTSVENPSE
ALRSVAAKREHNSIDASGKLTTPAKCAVGTALFVTFEDAAESREASLESH
DAAIAAISKQFECKVAYLYLAAPSTAPVVQRRTRRDTAATTGGIMWKSTN
QFQIFYTALLYNGNPITVTDLKLTNSSSTKLSVVMDTSVADKPITFDVVY
NGGYFSLSNLVYDNNNFRSSGVNAPTTFSYSCGNLTLESAAVNNMYNTLS
FKSLQLQAPFDGTYKEDFPFGDSWDCVGFVTPGILMGLFVVALLLVIMFV
GVCWMMDINTMDRFDDPKGKTITINAAAE*

BS05109.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC45-PA 379 CG8029-PA 1..379 1..379 1943 100 Plus
VhaAC45-PB 379 CG8029-PB 1..379 1..379 1943 100 Plus
CG5421-PB 426 CG5421-PB 10..418 6..367 183 21.5 Plus
CG5421-PA 426 CG5421-PA 10..418 6..367 183 21.5 Plus
CG31030-PA 384 CG31030-PA 281..379 273..373 153 35 Plus