Clone BS05119 Report

Search the DGRC for BS05119

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:51
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptHex-A-RA
Protein status:BS05119.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05119.3prime Sequence

862 bp (837 high quality bases) assembled on 2005-12-02

> BS05119.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGCCATTGAGTATGTCTTCGCGACAG
GCGACGGCCGCCACCAGGGCAGCTCCACGACCGGAACCGTCCTCGGACAG
CATCAGATCGAAGGTGATGCCCGGCTTGATCAGCTGCGAGATCTTCTCGA
CCATCAGGTTATGGAACTTGGGATGGAAGCGGTACACACTGCCATCGACG
CCCACCGTCACCGTTGGCTCGTCCATTTTGTTGATCAGCGTGGCAATGCC
GGCGGACACCAGGTGGGCAGCCCGTTTCGAGACGCACTCGCAGATGTACC
GCACATTGGCGCAGTCCCCGTCGGTGGCATTGGTCAGACCGAGCTCCTCC
AGCACCAGGCGGCAATTGGTGAAGTTGCCTGGCTCGTCAGCTTCAATTTC
GCTCACATACTTGGTGAAGAACAGTCCGCGGGTGTTTAGCACTTCGGAAT
CCTGTCCATTGAAGAGTATACCCGCCTGGGTCATCTTCACCAGCACCAGA
CGCACCAGCTCGCCCATATACATGCCCGATATCATCTTCTCGAACGTCTG
CTTGCCCGGATTGATGCTGTGCACATCGATGTCCCGATCGAATTCGGTGC
GCACAAAGTCCAGTGCGCCATTGTCGCCGAATGCGCCCCATTCCGTGTTG
ATCAGGACGTGCTTCTTGCGCGGATCCTCGGCGGCGAAGAGCTCCGCCTC
CTCCACACGCTCCATATAGCAGGCATTTGCACCGGTGCCGACAATCAGAC
CGATCTTGCAGTTGTGATTCTTCCAGGCGCAGCTCATCAGCGTGCCAGTG
GTGTCATTGAGTATGGCACACACATCGATCTGGACATCGCCGCGCCGTGC
GATGGCATCCTT

BS05119.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3001-PA 1626 Hex-A-RA 781..1626 862..17 4230 100 Minus
CG3001-PB 1347 Hex-A-RB 502..1347 862..17 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-A-RC 4139 CG3001-RC 1325..2170 862..17 4230 100 Minus
Hex-A-RB 2512 CG3001-RB 1110..1955 862..17 4230 100 Minus
Hex-A-RA 2512 CG3001-RA 1110..1955 862..17 4230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9586999..9587844 862..17 4230 100 Minus
3R 32079331 3R 26451694..26451762 563..495 195 85.5 Minus
Blast to na_te.dros performed on 2015-02-12 04:14:52 has no hits.

BS05119.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:18 Download gff for BS05119.3prime
Subject Subject Range Query Range Percent Splice Strand
Hex-A-PA 781..1626 17..862 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:02 Download gff for BS05119.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3001-PB 502..1347 17..862 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:47 Download gff for BS05119.3prime
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1110..1955 17..862 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:19 Download gff for BS05119.3prime
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1110..1955 17..862 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:19 Download gff for BS05119.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9586999..9587844 17..862 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:47 Download gff for BS05119.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9481032..9481877 17..862 100   Minus

BS05119.5prime Sequence

887 bp (793 high quality bases) assembled on 2005-12-02

> BS05119.5prime
GAAGTTATCAGTCGACATGGATCGGGAGCTGAACGGGGCGATGAAGAGCG
TGTCCATAAATAGCGCCCAACTGAATGGTCACAATAACGGTGGCGGGCTA
GATGAAACGGACCGCGTGGGCGTGGCACAGGGGGCGGCACTGAGTGCAAC
AGAGAAAATTACAACAACGACGGCGGCAGCTACAAAATCAGCGACAGCGA
CCACAAATGCAACCACAGCAACAGCCACAACCACAAATCTTACAACTCAC
AGCCCGCAGCAAATTGCACTCTTATCCGCTGCAGAGAAAAGTAAGATGGT
GCACGAGTTATGTCAGCAGCTGCTTCTAACGGACGAACAGGTGCAGGAGC
TGTGCTACCGCATCCTGCACGAGCTGCGCCGCGGCCTGGCCAAGGATACA
CATCCCAAGGCGAATGTCAAGTGCTTCGTAACGTATGTGCAGGATCTGCC
CAATGGCAATGAGCGTGGCAAGTTCTTGGCCTTGGATCTGGGTGGCACCA
ACTTCCGGGTGCTGCTCATCCATCTGCAGGAGAACAACGATTTTCAAATG
GAGTCCCGCATCTATGCCATACCGCAGCACATTATGATTGGATCGGGTAC
ACAGCTATTCGATCACATCGCCGAATGTCTGTCCAACTTTATGGCCGAGC
ACAATGTGTACAAGGAGCGTTTGCCACTCGGTTTCACCTTCTCGTTCCCG
CTGCGCCAATTGGGTCTGACCAAGGGCCTGCTGGAGACCTGGACCAAGGG
CTTCAACTGCGCTGGCGTCGTCAACGAGGATGTTGTCCAGTTGCTAAAGG
ATGCCATCGCACGGCGCGGCGATGTCCAGATCGATGTGTGTGCCATACTC
AATGACACCACTGGCACGCTGATGAGCTGCCCCTGGA

BS05119.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3001-PA 1626 Hex-A-RA 1..871 17..887 4330 99.8 Plus
CG3001-PB 1347 Hex-A-RB 1..592 296..887 2935 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-A-RC 4139 CG3001-RC 545..1415 17..887 4340 99.9 Plus
Hex-A-RB 2512 CG3001-RB 330..1200 17..887 4340 99.9 Plus
Hex-A-RA 2512 CG3001-RA 330..1200 17..887 4340 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9586219..9587089 17..887 4340 99.9 Plus
3R 32079331 3R 26450890..26451020 383..513 250 79.4 Plus
2R 25286936 2R 15220031..15220147 517..401 210 78.6 Minus
Blast to na_te.dros performed 2015-02-12 11:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2575 132..415 191 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2466..2654 162..352 176 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2494 147..235 168 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1512..1589 156..233 156 66.7 Plus

BS05119.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:19 Download gff for BS05119.5prime
Subject Subject Range Query Range Percent Splice Strand
Hex-A-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:03 Download gff for BS05119.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3001-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:46 Download gff for BS05119.5prime
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 330..1199 17..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:26 Download gff for BS05119.5prime
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 330..1199 17..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:26 Download gff for BS05119.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9586219..9587088 17..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:46 Download gff for BS05119.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9480252..9481121 17..886 99   Plus

BS05119.complete Sequence

1658 bp assembled on 2007-10-17

GenBank Submission: FJ635060

> BS05119.complete
GAAGTTATCAGTCGACATGGATCGGGAGCTGAACGGGGCGATGAAGAGCG
TGTCCATAAATAGCGCCCAACTGAATGGTCACAATAACGGTGGCGGGCTA
GATGAAACGGACCGCGTGGGCGTGGCACAGGGGGCGGCACTGAGTGCAAC
AGAGAAAATTACAACAACGACGGCGGCAGCTACAAAATCAGCGACAGCGA
CCACAAATGCAACCACAGCAACAGCCACAACCACAAATCTTACAACTCAC
AGCCCGCAGCAAATTGCACTCTTATCCGCTGCAGAGAAAAGTAAGATGGT
GCACGAGTTATGTCAGCAGCTGCTTCTAACGGACGAACAGGTGCAGGAGC
TGTGCTACCGCATCCTGCACGAGCTGCGCCGCGGCCTGGCCAAGGATACA
CATCCCAAGGCGAATGTCAAGTGCTTCGTAACGTATGTGCAGGATCTGCC
CAATGGCAATGAGCGTGGCAAGTTCTTGGCCTTGGATCTGGGTGGCACCA
ACTTCCGGGTGCTGCTCATCCATCTGCAGGAGAACAACGATTTTCAAATG
GAGTCCCGCATCTATGCCATACCGCAGCACATTATGATTGGATCGGGTAC
ACAGCTATTCGATCACATCGCCGAATGTCTGTCCAACTTTATGGCCGAGC
ACAATGTGTACAAGGAGCGTTTGCCACTCGGTTTCACCTTCTCGTTCCCG
CTGCGCCAATTGGGTCTGACCAAGGGCCTGCTGGAGACCTGGACCAAGGG
CTTCAACTGCGCTGGCGTCGTCAACGAGGATGTTGTCCAGTTGCTAAAGG
ATGCCATCGCACGGCGCGGCGATGTCCAGATCGATGTGTGTGCCATACTC
AATGACACCACTGGCACGCTGATGAGCTGCGCCTGGAAGAATCACAACTG
CAAGATCGGTCTGATTGTCGGCACCGGTGCAAATGCCTGCTATATGGAGC
GTGTGGAGGAGGCGGAGCTCTTCGCCGCCGAGGATCCGCGCAAGAAGCAC
GTCCTGATCAACACGGAATGGGGCGCATTCGGCGACAATGGCGCACTGGA
CTTTGTGCGCACCGAATTCGATCGGGACATCGATGTGCACAGCATCAATC
CGGGCAAGCAGACGTTCGAGAAGATGATATCGGGCATGTATATGGGCGAG
CTGGTGCGTCTGGTGCTGGTGAAGATGACCCAGGCGGGTATACTCTTCAA
TGGACAGGATTCCGAAGTGCTAAACACCCGCGGACTGTTCTTCACCAAGT
ATGTGAGCGAAATTGAAGCTGACGAGCCAGGCAACTTCACCAATTGCCGC
CTGGTGCTGGAGGAGCTCGGTCTGACCAATGCCACCGACGGGGACTGCGC
CAATGTGCGGTACATCTGCGAGTGCGTCTCGAAACGGGCTGCCCACCTGG
TGTCCGCCGGCATTGCCACGCTGATCAACAAAATGGACGAGCCAACGGTG
ACGGTGGGCGTCGATGGCAGTGTGTACCGCTTCCATCCCAAGTTCCATAA
CCTGATGGTCGAGAAGATCTCGCAGCTGATCAAGCCGGGCATCACCTTCG
ATCTGATGCTGTCCGAGGACGGTTCCGGTCGTGGAGCTGCCCTGGTGGCG
GCCGTCGCCTGTCGCGAAGACATACTCAATGGCAAGAAGTAGAAGCTTTC
TAGACCAT

BS05119.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-A-RA 1626 CG3001-PA 1..1626 17..1642 8130 100 Plus
Hex-A-RC 1347 CG3001-PC 1..1347 296..1642 6735 100 Plus
Hex-A-RB 1347 CG3001-PB 1..1347 296..1642 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-A-RC 4139 CG3001-RC 545..2170 17..1642 8130 100 Plus
Hex-A-RB 2512 CG3001-RB 330..1955 17..1642 8130 100 Plus
Hex-A-RA 2512 CG3001-RA 330..1955 17..1642 8130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9586219..9587844 17..1642 8130 100 Plus
3R 32079331 3R 26450890..26451020 383..513 250 79.4 Plus
2R 25286936 2R 15220031..15220147 517..401 210 78.6 Minus
3R 32079331 3R 26451694..26451762 1096..1164 195 85.5 Plus
Blast to na_te.dros performed 2014-11-26 22:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2575 132..415 191 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2466..2654 162..352 176 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2494 147..235 168 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1512..1589 156..233 156 66.7 Plus

BS05119.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:38 Download gff for BS05119.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 1..1626 17..1642 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:38 Download gff for BS05119.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RB 335..1960 17..1642 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:17 Download gff for BS05119.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 330..1955 17..1642 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:07 Download gff for BS05119.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RB 335..1960 17..1642 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:37 Download gff for BS05119.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-A-RA 330..1955 17..1642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:37 Download gff for BS05119.complete
Subject Subject Range Query Range Percent Splice Strand
X 9586219..9587844 17..1642 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:17 Download gff for BS05119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9480252..9481877 17..1642 100   Plus

BS05119.pep Sequence

Translation from 16 to 1641

> BS05119.pep
MDRELNGAMKSVSINSAQLNGHNNGGGLDETDRVGVAQGAALSATEKITT
TTAAATKSATATTNATTATATTTNLTTHSPQQIALLSAAEKSKMVHELCQ
QLLLTDEQVQELCYRILHELRRGLAKDTHPKANVKCFVTYVQDLPNGNER
GKFLALDLGGTNFRVLLIHLQENNDFQMESRIYAIPQHIMIGSGTQLFDH
IAECLSNFMAEHNVYKERLPLGFTFSFPLRQLGLTKGLLETWTKGFNCAG
VVNEDVVQLLKDAIARRGDVQIDVCAILNDTTGTLMSCAWKNHNCKIGLI
VGTGANACYMERVEEAELFAAEDPRKKHVLINTEWGAFGDNGALDFVRTE
FDRDIDVHSINPGKQTFEKMISGMYMGELVRLVLVKMTQAGILFNGQDSE
VLNTRGLFFTKYVSEIEADEPGNFTNCRLVLEELGLTNATDGDCANVRYI
CECVSKRAAHLVSAGIATLINKMDEPTVTVGVDGSVYRFHPKFHNLMVEK
ISQLIKPGITFDLMLSEDGSGRGAALVAAVACREDILNGKK*

BS05119.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-A-PA 541 CG3001-PA 1..541 1..541 2801 100 Plus
Hex-A-PC 448 CG3001-PC 1..448 94..541 2349 100 Plus
Hex-A-PB 448 CG3001-PB 1..448 94..541 2349 100 Plus
Hex-t2-PA 486 CG32849-PA 50..479 103..531 1283 56.5 Plus
Hex-C-PA 454 CG8094-PA 6..452 95..533 1243 54.4 Plus