Clone Sequence Records
BS05121.3prime Sequence
908 bp (845 high quality bases) assembled on 2005-12-02
> BS05121.3prime
ATGGTCTAGAAAGCTTCTACTCAAAGCCCGCCGGTTGCATGAGGAACTGG
TGCTGGCTGCTCATTGTCGGCAGCTGTATGTCTTCCATGGTCATGGATGT
CTTGGGGATGTTGACGGCCTCCGCCGATCCTCCCGCCTCTGCATCATCCC
CCTCCAGCATGGCACTGTCGAAGCTCTTATTCAGACGATCGTGGAACTCG
GTCATGGAGATTTTCTTGAGTGCGAAACGCTTGCCAAAGGTCTTCTTCAC
CTTCTGGCGGCGTCTCTTCGACAGGATTTTGTTCTTGTTCAGGCCATCGC
TGAAGGATATTGCCCGGCGGAGTTTGCGACCCCACACCTTAACTACTTTC
ACTTGGCTGCTGATGGAGCACTCTTCGCTGTCGTCCTCTGCATCGGCGGC
ATTCTCATCGCTGGGTTCCTCGAAGATTGTCTCCAGATTGGTGGGCGTGA
ACTTTTTCATGCGCCTGCTGGTGTAGATCTTTTCGATGCTTTTAAGTGTT
TGGGCATTTGTGTTCAGTTCTTTGCGTTGCTTCTTTTTGATGGGTTTCAT
GATGGCGCTGCAGATCCGGTTAAAGTTGTCCTTGGACACCCTGGCGGGCA
TTCTGCGACGAGCCACGCCCGCTCGAGCTCCAAAAGTGGAACTGCGTCTG
GAGGATCCACTGATGCAATCGCTGTCGTCATCGTTGTCCTCGCAGCGACT
CAATTGCGAGTCTACATCGTCGGAGTCATGCGATTCACTGCTGACATTGT
CATCGGATTCGGGTGGAGCTATGGGCTCGGATGTGTCCTGCATCTCCTCC
ATGTCCGACAAGGCCATCTGATTTAGTTGCCACGACAGATTCGAGTTAAT
AGTGGGTGACCTGTTGTCTTTTGCTTGAAACGTGATCTTGGCAAAGTCGT
AGACTATG
BS05121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6586-PA | 900 | tan-RA | 9..900 | 908..17 | 4435 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tan-RB | 1657 | CG6586-RB | 324..1216 | 908..16 | 4450 | 99.9 | Minus |
tan-RA | 1494 | CG6586-RA | 324..1216 | 908..16 | 4450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6055714..6056561 | 863..16 | 4225 | 99.9 | Minus |
3L | 28110227 | 3L | 6055616..6055665 | 908..859 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:04:11 has no hits.
BS05121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:22 Download gff for
BS05121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-PA | 9..900 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:07 Download gff for
BS05121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6586-PA | 9..900 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:32:12 Download gff for
BS05121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 324..1216 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:15 Download gff for
BS05121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 324..1216 | 16..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:15 Download gff for
BS05121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6055616..6055663 | 861..908 | 100 | -> | Minus |
3L | 6055717..6056561 | 16..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:32:12 Download gff for
BS05121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6048716..6048763 | 861..908 | 100 | -> | Minus |
arm_3L | 6048817..6049661 | 16..860 | 99 | | Minus |
BS05121.5prime Sequence
903 bp (809 high quality bases) assembled on 2005-11-29
> BS05121.5prime
GAAGTTATCAGTCGACATGGATAACATAGTCTACGACTTTGCCAAGATCA
CGTTTCAAGCAAAAGACAACAGGTCACCCACTACTAACTCGAATCTGTCG
TGGCAACTAAATCAGATGGCCTTGTCGGACATGGAGGAGATGCAGGACAC
ATCCGAGCCCATAGCTCCACCCGAATCCGATGACAATGTCAGCAGTGAAT
CGCATGACTCCGACGATGTAGACTCGCAATTGAGTCGCTGCGAGGACAAC
GATGACGACAGCGATTGCATCAGTGGATCCTCCAGACGCAGTTCCACTTT
TGGAGCTCGAGCGGGCGTGGCTCGTCGCAGAATGCCCGCCAGGGTGTCCA
AGGACAACTTTAACCGGATCTGCAGCGCCATCATGAAACCCATCAAAAAG
AAGCAACGCAAAGAACTGAACACAAATGCCCAAACACTTAAAAGCATCGA
AAAGATCTACACCAGCAGGCGCATGAAAAAGTTCACGCCCACCAATCTGG
AGACAATCTTCGAGGAACCCAGCGATGAGAATGCCGCCGATGCAGAGGAC
GACAGCGAAGAGTGCTCCATCAGCAGCCAAGTGAAAGTAGTTAAGGTGTG
GGGTCGCAAACTCCGCCGGGCAATATCCTTCAGCGATGGCCTGAACAAGA
ACAAAATCCTGTCGAAGAGACGCCGCCAGAAGGTGAAGAAGACCTTTGGC
AAGCGTTTCGCACTCAAGAAAATCTCCATGACCGAGTTCCACGATCGTCT
GAATAAGAGCTTCGACAGTGCCATGCTGGAGGGGGATGATGCAGAGGCGG
GAGGATCGGCGGAAGCCGTCAACATCCCCAAGACATCCATGACCATGGAA
GACATACAGCTGCCGACAATGAGCAGCCAGCACCAGTTCCTCCTGCAACC
GGC
BS05121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6586-PA | 900 | tan-RA | 1..887 | 17..903 | 4385 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tan-RB | 1657 | CG6586-RB | 316..1202 | 17..903 | 4405 | 99.8 | Plus |
tan-RA | 1494 | CG6586-RA | 316..1202 | 17..903 | 4405 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6055714..6056547 | 70..903 | 4140 | 99.8 | Plus |
3L | 28110227 | 3L | 6055608..6055665 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:16:17 has no hits.
BS05121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:23 Download gff for
BS05121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:09 Download gff for
BS05121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6586-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:23 Download gff for
BS05121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 316..1202 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:56 Download gff for
BS05121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 316..1202 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:56 Download gff for
BS05121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6055608..6055663 | 17..72 | 100 | -> | Plus |
3L | 6055717..6056547 | 73..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:23 Download gff for
BS05121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6048708..6048763 | 17..72 | 100 | -> | Plus |
arm_3L | 6048817..6049647 | 73..903 | 99 | | Plus |
BS05121.complete Sequence
932 bp (932 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635061
> BS05121.complete
GAAGTTATCAGTCGACATGGATAACATAGTCTACGACTTTGCCAAGATCA
CGTTTCAAGCAAAAGACAACAGGTCACCCACTACTAACTCGAATCTGTCG
TGGCAACTAAATCAGATGGCCTTGTCGGACATGGAGGAGATGCAGGACAC
ATCCGAGCCCATAGCTCCACCCGAATCCGATGACAATGTCAGCAGTGAAT
CGCATGACTCCGACGATGTAGACTCGCAATTGAGTCGCTGCGAGGACAAC
GATGACGACAGCGATTGCATCAGTGGATCCTCCAGACGCAGTTCCACTTT
TGGAGCTCGAGCGGGCGTGGCTCGTCGCAGAATGCCCGCCAGGGTGTCCA
AGGACAACTTTAACCGGATCTGCAGCGCCATCATGAAACCCATCAAAAAG
AAGCAACGCAAAGAACTGAACACAAATGCCCAAACACTTAAAAGCATCGA
AAAGATCTACACCAGCAGGCGCATGAAAAAGTTCACGCCCACCAATCTGG
AGACAATCTTCGAGGAACCCAGCGATGAGAATGCCGCCGATGCAGAGGAC
GACAGCGAAGAGTGCTCCATCAGCAGCCAAGTGAAAGTAGTTAAGGTGTG
GGGTCGCAAACTCCGCCGGGCAATATCCTTCAGCGATGGCCTGAACAAGA
ACAAAATCCTGTCGAAGAGACGCCGCCAGAAGGTGAAGAAGACCTTTGGC
AAGCGTTTCGCACTCAAGAAAATCTCCATGACCGAGTTCCACGATCGTCT
GAATAAGAGCTTCGACAGTGCCATGCTGGAGGGGGATGATGCAGAGGCGG
GAGGATCGGCGGAGGCCGTCAACATCCCCAAGACATCCATGACCATGGAA
GACATACAGCTGCCGACAATGAGCAGCCAGCACCAGTTCCTCATGCAACC
GGCGGGCTTTGAGTAGAAGCTTTCTAGACCAT
BS05121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tan-RB | 900 | CG6586-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
tan-RA | 900 | CG6586-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tan-RB | 1657 | CG6586-RB | 316..1216 | 17..917 | 4505 | 100 | Plus |
tan-RA | 1494 | CG6586-RA | 316..1216 | 17..917 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6055714..6056561 | 70..917 | 4240 | 100 | Plus |
3L | 28110227 | 3L | 6055608..6055665 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:20:58 has no hits.
BS05121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:45 Download gff for
BS05121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:00 Download gff for
BS05121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 274..1174 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:45 Download gff for
BS05121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 316..1215 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:45 Download gff for
BS05121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 274..1174 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:26 Download gff for
BS05121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tan-RA | 316..1215 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:26 Download gff for
BS05121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6055608..6055663 | 17..72 | 100 | -> | Plus |
3L | 6055717..6056560 | 73..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:45 Download gff for
BS05121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6048708..6048763 | 17..72 | 100 | -> | Plus |
arm_3L | 6048817..6049660 | 73..916 | 100 | | Plus |
BS05121.pep Sequence
Translation from 16 to 915
> BS05121.pep
MDNIVYDFAKITFQAKDNRSPTTNSNLSWQLNQMALSDMEEMQDTSEPIA
PPESDDNVSSESHDSDDVDSQLSRCEDNDDDSDCISGSSRRSSTFGARAG
VARRRMPARVSKDNFNRICSAIMKPIKKKQRKELNTNAQTLKSIEKIYTS
RRMKKFTPTNLETIFEEPSDENAADAEDDSEECSISSQVKVVKVWGRKLR
RAISFSDGLNKNKILSKRRRQKVKKTFGKRFALKKISMTEFHDRLNKSFD
SAMLEGDDAEAGGSAEAVNIPKTSMTMEDIQLPTMSSQHQFLMQPAGFE*
BS05121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tan-PA | 299 | CG6586-PA | 1..299 | 1..299 | 1525 | 100 | Plus |
tan-PB | 299 | CG6586-PB | 1..299 | 1..299 | 1525 | 100 | Plus |