Clone Sequence Records
BS05122.3prime Sequence
882 bp (852 high quality bases) assembled on 2005-12-02
> BS05122.3prime
ATGGTCTAGAAAGCTTCTAGTTATTGGCCGCCATTGGCTTGCCGAGGACA
CGCATGGCATTGGAGTAGTCCGAATCGATCTGCGGAATGATCTGCTGTTC
GTTGGGCCGCAGGGTGCGTATCAGATCGTTGAGTGACAGGGAGGATTGGG
GGGTCAGCTCCTCCTTGGGCTGCAGCTCCTGGGAGCTGGCCATTTTCTGG
AAGTCCTGGGCGATCTGCTTGATGCGCTCCTCGATGGCGGCGGCTGGGGA
TTCAGTGGAGCTGGGCATCGCCAATGGTTCGTTGGCCTTGATAAGATCCA
CCGGCGTCTCATTTTCCAAGTCAGTCTCGCCCTCAGCTCCATCCTGCTCG
TGCTCTCCATCCGCCTCCGCATCGTGTTGCGAGCTCTCGTTATCCTCAGC
CGCCGCGGGAGCTGGTGCCGAGTCCGCATCCGCATCCTCCTGCTGCAACT
GCTGCTGTACCTCTTCGATCGAATGCACCTCGGGGTGGAGTTCGTTGTCG
CTCAGTGGGAATACGTGCTCCTTGATATCGCCATCGTTGTCGTTGCTCAG
CTCACGGGCATGCTCCTCGAAGTTGTCGTGCTCGTCATGCTCCTCTTCGC
CCTCGGCCTCATGGTCATCGTGCTCCTCGCCATCCAAATCCGCTTCCTGA
TCCTCCACATCCACGTCAGTGGAATCCGTATCGGGCAGCGAGCGATCATG
GTTCAGCTTAAAGGACATAAACGAGGGTTGCTGCTGGGAGCTGGAATCAT
CGATCAGTCGGTGGCCAACGGCTGGCGAAGATTTGGCCTTGGCAGCGGTG
TACATTGCTCCACTGGTGGACATCAGCAGGGGCAAGGGTGTGGTGGTGGC
GGCCACTTGCAGGTTCATGTCGACTGATAACT
BS05122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4844-PA | 852 | CG4844-RA | 1..852 | 868..17 | 4235 | 99.8 | Minus |
CG4844-PB | 852 | CG4844-RB | 1..852 | 868..17 | 4235 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-RE | 2012 | CG43164-RE | 854..1705 | 868..17 | 4245 | 99.9 | Minus |
CG43164-RC | 2338 | CG43164-RC | 1180..2031 | 868..17 | 4245 | 99.9 | Minus |
CG43164-RB | 2447 | CG43164-RB | 1289..2140 | 868..17 | 4245 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17507487..17508338 | 868..17 | 4245 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:18:28 has no hits.
BS05122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:24 Download gff for
BS05122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-PB | 1..852 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:10 Download gff for
BS05122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-PB | 1..852 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:24:18 Download gff for
BS05122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2146 | 8..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:55 Download gff for
BS05122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2146 | 8..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:55 Download gff for
BS05122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17507487..17508344 | 8..868 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:24:18 Download gff for
BS05122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13394992..13395849 | 8..868 | 99 | | Minus |
BS05122.5prime Sequence
882 bp (800 high quality bases) assembled on 2005-11-29
> BS05122.5prime
GAAGTTATCAGTCGACATGAACCTGCATGTGGCCGCCACCACCACACCCT
TGCCCCTGCTGATGTCCACCAGTGGAGCAATGTACACCGCTGCCAAGGCC
AAATCTTCGCCAGCCGTTGGCCACCGACTGATCGATGATTCCAGCTCCCA
GCAGCAACCCTCGTTTATGTCCTTTAAGCTGAACCATGATCGCTCGCTGC
CCGATACGGATTCCACTGACGTGGATGTGGAGGATCAGGAAGCGGATTTG
GATGGCGAGGAGCACGATGACCATGAGGCCGAGGGCGAAGAGGAGCATGA
CGAGCACGACAACTTCGAGGAGCATGCCCGTGAGCTGAGCAACGACAACG
ATGGCGATATCAAGGAGCACGTATTCCCACTGAGCGACAACGAACTCCAC
CCCGAGGTGCATTCGATCGAAGAGGTACAGCAGCAGTTGCAGCAGGAGGA
TGCGGATGCGGACTCGGCACCAGCTCCCGCGGCGGCTGAGGATAACGAGA
GCTCGCAACACGATGCGGAGGCGGATGGAGAGCACGAGCAGGATGGAGCT
GAGGGCGAGACTGACTTGGAAAATGAGACGCCGGTGGATCTTATCAAGGC
CAACGAACCATTGGCGATGCCCAGCTCCACTGAATCCCCAGCCGCCGCCA
TCGAGGAGCGCATCAAGCAGATCGCCCAGGACTTCCAGAAAATGGCCAGC
TCCCAGGAGCTGCAGCCCAAGGAGGAGCTGACCCCCCAATCCTCCCTGTC
ACTCAACGATCTGATACGCACCCTGCGGCCCAACGAACAGCAGATCATTC
CGCAGATCGATTCGGACTACTCCAATGCCATGCGTGTCCTCGGCAAGCCA
ATGGCGGCCAATAACTAAAAGCTTTCTAGACC
BS05122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4844-PA | 852 | CG4844-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG4844-PB | 852 | CG4844-RB | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-RE | 2012 | CG43164-RE | 854..1704 | 17..867 | 4255 | 100 | Plus |
CG43164-RC | 2338 | CG43164-RC | 1180..2030 | 17..867 | 4255 | 100 | Plus |
CG43164-RB | 2447 | CG43164-RB | 1289..2139 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17507487..17508337 | 17..867 | 4255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:47:17 has no hits.
BS05122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:25 Download gff for
BS05122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-PB | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:12 Download gff for
BS05122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-PB | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:34 Download gff for
BS05122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2142 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:24:03 Download gff for
BS05122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2142 | 17..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:24:03 Download gff for
BS05122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17507487..17508340 | 17..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:34 Download gff for
BS05122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13394992..13395845 | 17..872 | 99 | | Plus |
BS05122.complete Sequence
884 bp (884 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ635062
> BS05122.complete
GAAGTTATCAGTCGACATGAACCTGCATGTGGCCGCCACCACCACACCCT
TGCCCCTGCTGATGTCCACCAGTGGAGCAATGTACACCGCTGCCAAGGCC
AAATCTTCGCCAGCCGTTGGCCACCGACTGATCGATGATTCCAGCTCCCA
GCAGCAACCCTCGTTTATGTCCTTTAAGCTGAACCATGATCGCTCGCTGC
CCGATACGGATTCCACTGACGTGGATGTGGAGGATCAGGAAGCGGATTTG
GATGGCGAGGAGCACGATGACCATGAGGCCGAGGGCGAAGAGGAGCATGA
CGAGCACGACAACTTCGAGGAGCATGCCCGTGAGCTGAGCAACGACAACG
ATGGCGATATCAAGGAGCACGTATTCCCACTGAGCGACAACGAACTCCAC
CCCGAGGTGCATTCGATCGAAGAGGTACAGCAGCAGTTGCAGCAGGAGGA
TGCGGATGCGGACTCGGCACCAGCTCCCGCGGCGGCTGAGGATAACGAGA
GCTCGCAACACGATGCGGAGGCGGATGGAGAGCACGAGCAGGATGGAGCT
GAGGGCGAGACTGACTTGGAAAATGAGACGCCGGTGGATCTTATCAAGGC
CAACGAACCATTGGCGATGCCCAGCTCCACTGAATCCCCAGCCGCCGCCA
TCGAGGAGCGCATCAAGCAGATCGCCCAGGACTTCCAGAAAATGGCCAGC
TCCCAGGAGCTGCAGCCCAAGGAGGAGCTGACCCCCCAATCCTCCCTGTC
ACTCAACGATCTGATACGCACCCTGCGGCCCAACGAACAGCAGATCATTC
CGCAGATCGATTCGGACTACTCCAATGCCATGCGTGTCCTCGGCAAGCCA
ATGGCGGCCAATAACTAGAAGCTTTCTAGACCAT
BS05122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-RE | 1473 | CG43164-PE | 622..1473 | 17..868 | 4260 | 100 | Plus |
CG43164-RC | 1476 | CG43164-PC | 625..1476 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-RE | 2012 | CG43164-RE | 854..1705 | 17..868 | 4260 | 100 | Plus |
CG43164-RC | 2338 | CG43164-RC | 1180..2031 | 17..868 | 4260 | 100 | Plus |
CG43164-RB | 2447 | CG43164-RB | 1289..2140 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17507487..17508338 | 17..868 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:44 has no hits.
BS05122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:46 Download gff for
BS05122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-RB | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:01 Download gff for
BS05122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18431-RA | 1241..2098 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:28 Download gff for
BS05122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2140 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:47 Download gff for
BS05122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18431-RA | 1241..2098 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:53 Download gff for
BS05122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2140 | 17..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:53 Download gff for
BS05122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17507487..17508338 | 17..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:28 Download gff for
BS05122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13394992..13395843 | 17..868 | 100 | | Plus |
BS05122.pep Sequence
Translation from 16 to 867
> BS05122.pep
MNLHVAATTTPLPLLMSTSGAMYTAAKAKSSPAVGHRLIDDSSSQQQPSF
MSFKLNHDRSLPDTDSTDVDVEDQEADLDGEEHDDHEAEGEEEHDEHDNF
EEHARELSNDNDGDIKEHVFPLSDNELHPEVHSIEEVQQQLQQEDADADS
APAPAAAEDNESSQHDAEADGEHEQDGAEGETDLENETPVDLIKANEPLA
MPSSTESPAAAIEERIKQIAQDFQKMASSQELQPKEELTPQSSLSLNDLI
RTLRPNEQQIIPQIDSDYSNAMRVLGKPMAANN*
BS05122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-PE | 490 | CG43164-PE | 208..490 | 1..283 | 1454 | 100 | Plus |
CG43164-PC | 491 | CG43164-PC | 209..491 | 1..283 | 1454 | 100 | Plus |