Clone BS05122 Report

Search the DGRC for BS05122

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:51
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG4844-RA
Protein status:BS05122.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05122.3prime Sequence

882 bp (852 high quality bases) assembled on 2005-12-02

> BS05122.3prime
ATGGTCTAGAAAGCTTCTAGTTATTGGCCGCCATTGGCTTGCCGAGGACA
CGCATGGCATTGGAGTAGTCCGAATCGATCTGCGGAATGATCTGCTGTTC
GTTGGGCCGCAGGGTGCGTATCAGATCGTTGAGTGACAGGGAGGATTGGG
GGGTCAGCTCCTCCTTGGGCTGCAGCTCCTGGGAGCTGGCCATTTTCTGG
AAGTCCTGGGCGATCTGCTTGATGCGCTCCTCGATGGCGGCGGCTGGGGA
TTCAGTGGAGCTGGGCATCGCCAATGGTTCGTTGGCCTTGATAAGATCCA
CCGGCGTCTCATTTTCCAAGTCAGTCTCGCCCTCAGCTCCATCCTGCTCG
TGCTCTCCATCCGCCTCCGCATCGTGTTGCGAGCTCTCGTTATCCTCAGC
CGCCGCGGGAGCTGGTGCCGAGTCCGCATCCGCATCCTCCTGCTGCAACT
GCTGCTGTACCTCTTCGATCGAATGCACCTCGGGGTGGAGTTCGTTGTCG
CTCAGTGGGAATACGTGCTCCTTGATATCGCCATCGTTGTCGTTGCTCAG
CTCACGGGCATGCTCCTCGAAGTTGTCGTGCTCGTCATGCTCCTCTTCGC
CCTCGGCCTCATGGTCATCGTGCTCCTCGCCATCCAAATCCGCTTCCTGA
TCCTCCACATCCACGTCAGTGGAATCCGTATCGGGCAGCGAGCGATCATG
GTTCAGCTTAAAGGACATAAACGAGGGTTGCTGCTGGGAGCTGGAATCAT
CGATCAGTCGGTGGCCAACGGCTGGCGAAGATTTGGCCTTGGCAGCGGTG
TACATTGCTCCACTGGTGGACATCAGCAGGGGCAAGGGTGTGGTGGTGGC
GGCCACTTGCAGGTTCATGTCGACTGATAACT

BS05122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4844-PA 852 CG4844-RA 1..852 868..17 4235 99.8 Minus
CG4844-PB 852 CG4844-RB 1..852 868..17 4235 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-RE 2012 CG43164-RE 854..1705 868..17 4245 99.9 Minus
CG43164-RC 2338 CG43164-RC 1180..2031 868..17 4245 99.9 Minus
CG43164-RB 2447 CG43164-RB 1289..2140 868..17 4245 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17507487..17508338 868..17 4245 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:18:28 has no hits.

BS05122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:24 Download gff for BS05122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4844-PB 1..852 17..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:10 Download gff for BS05122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4844-PB 1..852 17..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:24:18 Download gff for BS05122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1289..2146 8..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:55 Download gff for BS05122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1289..2146 8..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:55 Download gff for BS05122.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17507487..17508344 8..868 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:24:18 Download gff for BS05122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13394992..13395849 8..868 99   Minus

BS05122.5prime Sequence

882 bp (800 high quality bases) assembled on 2005-11-29

> BS05122.5prime
GAAGTTATCAGTCGACATGAACCTGCATGTGGCCGCCACCACCACACCCT
TGCCCCTGCTGATGTCCACCAGTGGAGCAATGTACACCGCTGCCAAGGCC
AAATCTTCGCCAGCCGTTGGCCACCGACTGATCGATGATTCCAGCTCCCA
GCAGCAACCCTCGTTTATGTCCTTTAAGCTGAACCATGATCGCTCGCTGC
CCGATACGGATTCCACTGACGTGGATGTGGAGGATCAGGAAGCGGATTTG
GATGGCGAGGAGCACGATGACCATGAGGCCGAGGGCGAAGAGGAGCATGA
CGAGCACGACAACTTCGAGGAGCATGCCCGTGAGCTGAGCAACGACAACG
ATGGCGATATCAAGGAGCACGTATTCCCACTGAGCGACAACGAACTCCAC
CCCGAGGTGCATTCGATCGAAGAGGTACAGCAGCAGTTGCAGCAGGAGGA
TGCGGATGCGGACTCGGCACCAGCTCCCGCGGCGGCTGAGGATAACGAGA
GCTCGCAACACGATGCGGAGGCGGATGGAGAGCACGAGCAGGATGGAGCT
GAGGGCGAGACTGACTTGGAAAATGAGACGCCGGTGGATCTTATCAAGGC
CAACGAACCATTGGCGATGCCCAGCTCCACTGAATCCCCAGCCGCCGCCA
TCGAGGAGCGCATCAAGCAGATCGCCCAGGACTTCCAGAAAATGGCCAGC
TCCCAGGAGCTGCAGCCCAAGGAGGAGCTGACCCCCCAATCCTCCCTGTC
ACTCAACGATCTGATACGCACCCTGCGGCCCAACGAACAGCAGATCATTC
CGCAGATCGATTCGGACTACTCCAATGCCATGCGTGTCCTCGGCAAGCCA
ATGGCGGCCAATAACTAAAAGCTTTCTAGACC

BS05122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4844-PA 852 CG4844-RA 1..851 17..867 4255 100 Plus
CG4844-PB 852 CG4844-RB 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-RE 2012 CG43164-RE 854..1704 17..867 4255 100 Plus
CG43164-RC 2338 CG43164-RC 1180..2030 17..867 4255 100 Plus
CG43164-RB 2447 CG43164-RB 1289..2139 17..867 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17507487..17508337 17..867 4255 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:47:17 has no hits.

BS05122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:25 Download gff for BS05122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4844-PB 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:12 Download gff for BS05122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4844-PB 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:34 Download gff for BS05122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1289..2142 17..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:24:03 Download gff for BS05122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1289..2142 17..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:24:03 Download gff for BS05122.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17507487..17508340 17..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:34 Download gff for BS05122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13394992..13395845 17..872 99   Plus

BS05122.complete Sequence

884 bp (884 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ635062

> BS05122.complete
GAAGTTATCAGTCGACATGAACCTGCATGTGGCCGCCACCACCACACCCT
TGCCCCTGCTGATGTCCACCAGTGGAGCAATGTACACCGCTGCCAAGGCC
AAATCTTCGCCAGCCGTTGGCCACCGACTGATCGATGATTCCAGCTCCCA
GCAGCAACCCTCGTTTATGTCCTTTAAGCTGAACCATGATCGCTCGCTGC
CCGATACGGATTCCACTGACGTGGATGTGGAGGATCAGGAAGCGGATTTG
GATGGCGAGGAGCACGATGACCATGAGGCCGAGGGCGAAGAGGAGCATGA
CGAGCACGACAACTTCGAGGAGCATGCCCGTGAGCTGAGCAACGACAACG
ATGGCGATATCAAGGAGCACGTATTCCCACTGAGCGACAACGAACTCCAC
CCCGAGGTGCATTCGATCGAAGAGGTACAGCAGCAGTTGCAGCAGGAGGA
TGCGGATGCGGACTCGGCACCAGCTCCCGCGGCGGCTGAGGATAACGAGA
GCTCGCAACACGATGCGGAGGCGGATGGAGAGCACGAGCAGGATGGAGCT
GAGGGCGAGACTGACTTGGAAAATGAGACGCCGGTGGATCTTATCAAGGC
CAACGAACCATTGGCGATGCCCAGCTCCACTGAATCCCCAGCCGCCGCCA
TCGAGGAGCGCATCAAGCAGATCGCCCAGGACTTCCAGAAAATGGCCAGC
TCCCAGGAGCTGCAGCCCAAGGAGGAGCTGACCCCCCAATCCTCCCTGTC
ACTCAACGATCTGATACGCACCCTGCGGCCCAACGAACAGCAGATCATTC
CGCAGATCGATTCGGACTACTCCAATGCCATGCGTGTCCTCGGCAAGCCA
ATGGCGGCCAATAACTAGAAGCTTTCTAGACCAT

BS05122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-RE 1473 CG43164-PE 622..1473 17..868 4260 100 Plus
CG43164-RC 1476 CG43164-PC 625..1476 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-RE 2012 CG43164-RE 854..1705 17..868 4260 100 Plus
CG43164-RC 2338 CG43164-RC 1180..2031 17..868 4260 100 Plus
CG43164-RB 2447 CG43164-RB 1289..2140 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17507487..17508338 17..868 4260 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:06:44 has no hits.

BS05122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:46 Download gff for BS05122.complete
Subject Subject Range Query Range Percent Splice Strand
CG4844-RB 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:17:01 Download gff for BS05122.complete
Subject Subject Range Query Range Percent Splice Strand
CG18431-RA 1241..2098 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:28 Download gff for BS05122.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1289..2140 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:47 Download gff for BS05122.complete
Subject Subject Range Query Range Percent Splice Strand
CG18431-RA 1241..2098 17..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:53 Download gff for BS05122.complete
Subject Subject Range Query Range Percent Splice Strand
CG43164-RB 1289..2140 17..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:53 Download gff for BS05122.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17507487..17508338 17..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:28 Download gff for BS05122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13394992..13395843 17..868 100   Plus

BS05122.pep Sequence

Translation from 16 to 867

> BS05122.pep
MNLHVAATTTPLPLLMSTSGAMYTAAKAKSSPAVGHRLIDDSSSQQQPSF
MSFKLNHDRSLPDTDSTDVDVEDQEADLDGEEHDDHEAEGEEEHDEHDNF
EEHARELSNDNDGDIKEHVFPLSDNELHPEVHSIEEVQQQLQQEDADADS
APAPAAAEDNESSQHDAEADGEHEQDGAEGETDLENETPVDLIKANEPLA
MPSSTESPAAAIEERIKQIAQDFQKMASSQELQPKEELTPQSSLSLNDLI
RTLRPNEQQIIPQIDSDYSNAMRVLGKPMAANN*

BS05122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG43164-PE 490 CG43164-PE 208..490 1..283 1454 100 Plus
CG43164-PC 491 CG43164-PC 209..491 1..283 1454 100 Plus