Clone Sequence Records
BS05141.3prime Sequence
294 bp (292 high quality bases) assembled on 2005-12-02
> BS05141.3prime
ATGGTCTAGAAAGCTTTTAGTTGACCATCTCTTCCACTCTGAGGGCGTAG
TGAATGTCATCAGCGCTGACGTTGAGCAGGATTTTCTGAAAGAGGTCATT
GCGGGAATGTTCACTGATGATGAGTCGCTCGGCGCCCAGCTTGGAGCACA
AGCGCAGGGCGCGTCCTGGTGGTGGAAAGGTCACGCCCATGAAGGCGGCA
ATAGTTTCCACCTGCTGATAGACGCCCATGAAAGTCGTCTCCTCGACGCC
AGTGCGCGTAACTTCAGCTGCAATTGCCTGCAAGAAGATCTGCT
BS05141.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10667-PA | 2775 | Orc1-RA | 2498..2775 | 294..17 | 1390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc1-RA | 3152 | CG10667-RA | 2628..2905 | 294..17 | 1390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7522684..7522961 | 17..294 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:07:05 has no hits.
BS05141.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:51 Download gff for
BS05141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-PA | 2498..2775 | 17..294 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:48 Download gff for
BS05141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10667-PA | 2498..2775 | 17..294 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:13 Download gff for
BS05141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-RA | 2628..2908 | 13..294 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:24 Download gff for
BS05141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-RA | 2628..2908 | 13..294 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:24 Download gff for
BS05141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7522681..7522961 | 13..294 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:13 Download gff for
BS05141.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3410186..3410466 | 13..294 | 99 | | Plus |
BS05141.5prime Sequence
317 bp (307 high quality bases) assembled on 2005-12-02
> BS05141.5prime
GAAGTTATCAGTCGACATGGTTAATAAAGAGAACGCCCGCAGTGTGGGCC
AGCAGGTGAAGTGGATCGGAAGCCAAGACGAACTGCCGCCGGTGAAGAAT
CTGGAGCACAAGAACGTCTACTTCTACCAGAAGTGCATCTACGGTCCGCT
GACTTTGTCCGTTGGCGACTTTATACTGGTGTCGAACGCGGATGCCGCCG
AGCCGGACACAGTGAGTGGATGCGACGTGGCCCGGATCCTGCACATGTAC
GAGCTGCGCGAGCTGACCGATCGCGAGCCCTGCCGCGCCATCGTCCAGTG
GTACTCCTGGCCGAAAG
BS05141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10667-PA | 2775 | Orc1-RA | 1..301 | 17..317 | 1505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc1-RA | 3152 | CG10667-RA | 131..431 | 17..317 | 1505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7525286..7525586 | 317..17 | 1505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:36:15 has no hits.
BS05141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:52 Download gff for
BS05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-PA | 1..301 | 17..317 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:49 Download gff for
BS05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10667-PA | 1..301 | 17..317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:39:53 Download gff for
BS05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-RA | 124..431 | 9..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:31 Download gff for
BS05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-RA | 124..431 | 9..317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:31 Download gff for
BS05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7525286..7525593 | 9..317 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:39:53 Download gff for
BS05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3412791..3413098 | 9..317 | 99 | | Minus |
BS05141.complete Sequence
2807 bp assembled on 2011-02-17
GenBank Submission: KX798924
> BS05141.complete
GAAGTTATCAGTCGACATGGTTAATAAAGAGAACGCCCGCAGTGTGGGCC
AGCAGGTGAAGTGGATCGGAAGCCAAGACGAACTGCCGCCGGTGAAGAAT
CTGGAGCACAAGAACGTCTACTTCTACCAGAAGTGCATCTACGGTCCGCT
GACTTTGTCCGTTGGCGACTTTATACTGGTGTCGAACGCGGATGCCGCCG
AGCCGGACACAGTGAGTGGATGCGACGTGGCCCGGATCCTGCACATGTAC
GAGCTGCGCGAGCTGACCGATCGCGAGCCCTGCCGCGCCATCGTCCAGTG
GTACTCCTGGCCGAAAGCCATTCCGCACAACAAATACGACGACGACGAGG
TGGCCATAGACTTTAGCCTGGAGGTGATCGAGGAGCATCGCCCGTACGAC
AACGACGTGGCCCTCGGTGCCATCTATCGCAAGTGCATCGTGCTGGAGGG
TACCTCAAAAACGTCAGCGGAGGAGATTCTCAAACGACACGCCAACAAAC
TGAAGTCCACGGCCTGCCCCATGTTTGTCAGCCGGTACAGGTTTGTCAAG
GTGAAGCGGAGCTATCGCTTGATTCCCTTGGAAATTCACTTGGAGCAGCC
GGAGGACAATGCCAGGCCAACCCGCTCATCTCGCAAATCCCTAACTGCAC
ACAGAGAATCCAAGCGATCAATATCCGCCCGCCACGATGACACAGCTGGC
AACAAGGGATCCTCAGTGGAAAAACGACGACGTGCGTCCATGGCAGCCTC
GAGTTCCGTGGAGTTCATCGATGTCAACAGCTTCATCTGCGAGAATAAAG
TGTCGCCAATTAAGATCGTGGGCGGACGCAGTGTCGTCCGGTTGTCTGAG
AAGAAAAATGCTCCGGAGATCAATGCCAACTATCTGCCGGCTTCGCCTCT
CACTGAGAAGAACGCCAAGGTGGAGACACCGAAATCCCGGGCCTCGGCAG
CCCGCCGCAACCTAAATCTCAGCCTGGATCGCGGAGCCGACACCACAGCC
GACTCAGACTGCCTGAACTACTCCATTGTTCAGCAGACTCCCGATCCTAA
AACGCCTTCCAACGACATGAAGATCAAGCTGCGCCTTTCGGAGAGAAGGC
GTTCGGTGCGCCTCGCATCCATGGACGTGGATCCCTTGTCGTTAGAGGAG
GCCGTACAAGAACCCAATGCCCAGGGACGCAAGCGATTGGGCGTGGCCAA
TGGCGATATCTACCATACGCCCACCAAGAAATCCAAAGAGCCTCTGGAAT
CAGCTGCAGCTACCGAGCAAACGCCCTCGACGAGGCGTAAAAGCATCCTG
AAATCAGCAACTAGTCGATTGGCCGAGGGCACGCCCAGGCGCAGTATTCA
CCTCTCGAACATTGTGGAGCAGCGCGTGTTTGAGGATGATGAAATAATAT
CCACTCCGAAAAGGGGGCGCTCGAAGAAAACAGTTCAAGACAATGACGAG
GACTATTCGCCAAAGAAATCGGTCCAAAAGACGCCAACACGAACGCGTCG
GTCAAGCACCACCACCAAAACAGCGACGACACCCAGCAAAGGGATCACAA
CCGCAACTGCAACCCCGATGACGCCCTCCCAAAAGATGAAGAAGATACGA
GCCGGTGAACTTAGTCCCAGCATGCAACAGCGCACTGACCTTCCGGCCAA
GGATTCCAGCAAATCCGAACTGCAGCTAGCACGCGAACAGCTTCATGTGT
CTGTTGTGCCAAAGAGTTTGCCGTGCCGAGAACGGGAATTCGAGAACATT
TACGCCTTTCTGGAGGGCAAGATCCAGGATCAGTGCGGCGGCTGCATGTA
TGTGTCCGGAGTTCCGGGCACTGGCAAAACAGCCACTGTCACTGGCGTCA
TACGCACCCTGCAGAGGATGGCTAAACAGAATGAGCTGCCTGCCTTTGAG
TATCTGGAGATTAATGGCATGCGACTGACTGAGCCGCGTCAGGCCTACGT
CCAGATCTACAAACAGCTCACGGGCAAGACTGTGTCCTGGGAGCAGGCAC
ACGCTCTGCTAGAGAAACGGTTCACTACTCCGGCGCCGCGTAGAGTTACC
ACTGTGCTGCTGGTTGATGAGCTGGATATCTTGTGCAACCGGCGCCAAGA
TGTGGTCTACAATTTGCTCGACTGGCCCACCAAGTCGGCGGCCAAGCTGG
TAGTGGTCACCATTGCCAACACCATGGACTTGCCTGAGCGCTTGCTGATG
GGTAAAGTCACCTCTCGTCTTGGACTTACCCGTCTCACATTCCAGCCGTA
CAGCCACAAGCAGCTGCAAGAGATCGTTACCGCCCGCCTGGGAGGATCGG
AGACTTTTAAAGGCGAGGCCGTGCAGCTGGTGGCGCGCAAGGTAGCCGCC
GTTTCCGGTGATGCTCGCCGAGCTCTGGACATCTGCCGGCGTGCTACAGA
AATTGCTGATACGGCTGCGGTCAAGTGCGTCACAATGCTGCACGTGCAGC
AGGCATTGGCCGAGATGATAGCCAGTGCCAAGGTGCAGGCCATTAGGAAC
TGTTCGCGGATGGAGCAGATCTTCTTGCAGGCAATTGCAGCTGAAGTTAC
GCGCACTGGCGTCGAGGAGACGACTTTCATGGGCGTCTATCAGCAGGTGG
AAACTATTGCCGCCTTCATGGGCGTGACCTTTCCACCACCAGGACGCGCC
CTGCGCTTGTGCTCCAAGCTGGGCGCCGAGCGACTCATCATCAGTGAACA
TTCCCGCAATGACCTCTTTCAGAAAATCCTGCTCAACGTCAGCGCTGATG
ACATTCACTACGCCCTCAGAGTGGAAGAGATGGTCAACTAAAAGCTTTCT
AGACCAT
BS05141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc1-RA | 2775 | CG10667-PA | 1..2775 | 17..2791 | 13875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc1-RA | 3152 | CG10667-RA | 131..2905 | 17..2791 | 13875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7524281..7525586 | 1322..17 | 6530 | 100 | Minus |
| 2R | 25286936 | 2R | 7523333..7524216 | 2205..1322 | 4420 | 100 | Minus |
| 2R | 25286936 | 2R | 7522684..7523274 | 2791..2201 | 2955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:11:53 has no hits.
BS05141.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:34 Download gff for
BS05141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-RA | 123..2895 | 17..2789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:46 Download gff for
BS05141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-RA | 131..2903 | 17..2789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:30 Download gff for
BS05141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc1-RA | 131..2903 | 17..2789 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:30 Download gff for
BS05141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7522686..7523273 | 2202..2789 | 100 | <- | Minus |
| 2R | 7523337..7524215 | 1323..2201 | 100 | <- | Minus |
| 2R | 7524281..7525586 | 17..1322 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:46 Download gff for
BS05141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3410191..3410778 | 2202..2789 | 100 | <- | Minus |
| arm_2R | 3410842..3411720 | 1323..2201 | 100 | <- | Minus |
| arm_2R | 3411786..3413091 | 17..1322 | 100 | | Minus |
BS05141.pep Sequence
Translation from 16 to 2790
> BS05141.pep
MVNKENARSVGQQVKWIGSQDELPPVKNLEHKNVYFYQKCIYGPLTLSVG
DFILVSNADAAEPDTVSGCDVARILHMYELRELTDREPCRAIVQWYSWPK
AIPHNKYDDDEVAIDFSLEVIEEHRPYDNDVALGAIYRKCIVLEGTSKTS
AEEILKRHANKLKSTACPMFVSRYRFVKVKRSYRLIPLEIHLEQPEDNAR
PTRSSRKSLTAHRESKRSISARHDDTAGNKGSSVEKRRRASMAASSSVEF
IDVNSFICENKVSPIKIVGGRSVVRLSEKKNAPEINANYLPASPLTEKNA
KVETPKSRASAARRNLNLSLDRGADTTADSDCLNYSIVQQTPDPKTPSND
MKIKLRLSERRRSVRLASMDVDPLSLEEAVQEPNAQGRKRLGVANGDIYH
TPTKKSKEPLESAAATEQTPSTRRKSILKSATSRLAEGTPRRSIHLSNIV
EQRVFEDDEIISTPKRGRSKKTVQDNDEDYSPKKSVQKTPTRTRRSSTTT
KTATTPSKGITTATATPMTPSQKMKKIRAGELSPSMQQRTDLPAKDSSKS
ELQLAREQLHVSVVPKSLPCREREFENIYAFLEGKIQDQCGGCMYVSGVP
GTGKTATVTGVIRTLQRMAKQNELPAFEYLEINGMRLTEPRQAYVQIYKQ
LTGKTVSWEQAHALLEKRFTTPAPRRVTTVLLVDELDILCNRRQDVVYNL
LDWPTKSAAKLVVVTIANTMDLPERLLMGKVTSRLGLTRLTFQPYSHKQL
QEIVTARLGGSETFKGEAVQLVARKVAAVSGDARRALDICRRATEIADTA
AVKCVTMLHVQQALAEMIASAKVQAIRNCSRMEQIFLQAIAAEVTRTGVE
ETTFMGVYQQVETIAAFMGVTFPPPGRALRLCSKLGAERLIISEHSRNDL
FQKILLNVSADDIHYALRVEEMVN*
BS05141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc1-PA | 924 | CG10667-PA | 1..924 | 1..924 | 4686 | 100 | Plus |
| Cdc6-PA | 662 | CG5971-PA | 90..494 | 393..798 | 359 | 28.2 | Plus |
