Clone Sequence Records
BS05147.3prime Sequence
442 bp (360 high quality bases) assembled on 2005-12-02
> BS05147.3prime
ATGGTCTAGAAAGCTTCTAGTGCTCCATGGGCTGGGCATCTCCTCCGCCG
CCCTCCACGCGACGCTTTGCCCCGCCTCCAGCGGCCGGGTCCCTTTCCAC
CTCCTCGGTGATCTCGCTGAACATGTAGTCATCCTGGTACTCCTTGAGGA
TCTTGCTCGAGCGATTCTCGTCCAGGAAGAGCGAGTAGACCTTCTTCACA
TCCTCGGTATTGACTTCGGTGGCCTTGCGGCGACGACAGACCAAGTTGGC
TGTGGTAATCAGTTGGATGGCGTAGCGTAAACTGGTATCTGTGGCGATGC
GTGTAAGAATGGTCAGGGCATCCGGGTGCATGATGCAGTCCTCCTCCTCG
CAGCGAATCTTTAGGATCTCCTTAACCTCCTTCTCGGAATACGGTACAGT
GCGTATGATGATCATGCGATCGAGTAGATCAATGGGTATGCC
BS05147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9750-PA | 1446 | rept-RA | 1021..1446 | 442..17 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-RB | 1707 | CG9750-RB | 1196..1622 | 442..16 | 2135 | 100 | Minus |
rept-RC | 1714 | CG9750-RC | 1138..1564 | 442..16 | 2135 | 100 | Minus |
rept-RA | 1772 | CG9750-RA | 1196..1622 | 442..16 | 2135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19256535..19256961 | 442..16 | 2135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:05:42 has no hits.
BS05147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:59 Download gff for
BS05147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-PA | 1021..1446 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:59 Download gff for
BS05147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9750-PA | 1021..1446 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:32:30 Download gff for
BS05147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 1196..1627 | 7..442 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:32 Download gff for
BS05147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 1196..1627 | 7..442 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:32 Download gff for
BS05147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19256535..19256966 | 7..442 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:32:30 Download gff for
BS05147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19249635..19250066 | 7..442 | 99 | | Minus |
BS05147.5prime Sequence
419 bp (361 high quality bases) assembled on 2005-12-02
> BS05147.5prime
GAAGTTATCAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACG
TGACTCGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGA
CTGGACGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCA
GAAGGACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGG
GCAAGATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGC
AAAACGGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCC
ATTCACTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGA
CCGAGGCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAG
GAGGAAACCGAGATCATCG
BS05147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9750-PA | 1446 | rept-RA | 1..403 | 17..419 | 2015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-RB | 1707 | CG9750-RB | 176..578 | 17..419 | 2015 | 100 | Plus |
rept-RC | 1714 | CG9750-RC | 118..520 | 17..419 | 2015 | 100 | Plus |
rept-RA | 1772 | CG9750-RA | 176..578 | 17..419 | 2015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19255515..19255917 | 17..419 | 2015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:21:47 has no hits.
BS05147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:03:00 Download gff for
BS05147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-PA | 1..403 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:29:00 Download gff for
BS05147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9750-PA | 1..403 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:50:25 Download gff for
BS05147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 170..578 | 9..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:35 Download gff for
BS05147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 170..578 | 9..419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:35 Download gff for
BS05147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19255509..19255917 | 9..419 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:50:25 Download gff for
BS05147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19248609..19249017 | 9..419 | 99 | | Plus |
BS05147.complete Sequence
1478 bp assembled on 2008-08-14
GenBank Submission: FJ635063
> BS05147.complete
GAAGTTATCAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACG
TGACTCGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGA
CTGGACGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCA
GAAGGACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGG
GCAAGATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGC
AAAACGGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCC
ATTCACTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGA
CCGAGGCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAG
GAGGAAACCGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACG
CCCCGCCTCGGGTACCGGACAGAAGGTGGGCAAGGTCACCCTCAAGACCA
CCGAGATGGAAACCAACTACGATCTGGGCAACAAGATCATCGAGTGCTTC
ATGAAAGAGAAGATCCAGGCTGGCGATGTGATCACCATCGACAAGGCGTC
CGGAAAGGTCAACAAGCTGGGTCGCAGCTTCACCAGAGCCAGGGACTACG
ACGCCACTGGCGCTCAGACCAGATTCGTCCAATGCCCCGAGGGTGAGCTT
CAAAAACGCAAGGAGGTGGTGCACACTGTGACCCTACACGAGATCGATGT
TATCAATAGTCGCACCCACGGGTTCTTGGCCCTGTTCTCCGGCGATACTG
GAGAGATCAAGCAGGAGGTTCGCGATCAGATCAACAACAAGGTTCTCGAG
TGGCGCGAGGAGGGCAAAGCTGAGATAAATCCGGGAGTACTCTTCATAGA
CGAGGTGCACATGCTGGACATTGAGTGCTTCTCCTTCCTGAATCGCGCCC
TGGAGTCGGACATGGCTCCGGTGGTGGTGATGGCCACCAACCGCGGCATC
ACTCGTATTAGGGGCACTAACTATCGCAGTCCGCACGGCATACCCATTGA
TCTACTCGATCGCATGATCATCATACGCACTGTACCGTATTCCGAGAAGG
AGGTTAAGGAGATCCTAAAGATTCGCTGCGAGGAGGAGGACTGCATCATG
CACCCGGATGCCCTGACCATTCTTACACGCATCGCCACAGATACCAGTTT
ACGCTACGCCATCCAACTGATTACCACAGCCAACTTGGTCTGTCGTCGCC
GCAAGGCCACCGAAGTCAATACCGAGGATGTGAAGAAGGTCTACTCGCTC
TTCCTGGACGAGAATCGCTCGAGCAAGATCCTCAAGGAGTACCAGGATGA
CTACATGTTCAGCGAGATCACCGAGGAGGTGGAAAGGGACCCGGCCGCTG
GAGGCGGGGCAAAGCGTCGCGTGGAGGGCGGCGGAGGAGATGCCCAGCCC
ATGGAGCACTAGAAGCTTTCTAGACCAT
BS05147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-RB | 1446 | CG9750-PB | 1..1446 | 17..1462 | 7230 | 100 | Plus |
rept-RC | 1446 | CG9750-PC | 1..1446 | 17..1462 | 7230 | 100 | Plus |
rept-RA | 1446 | CG9750-PA | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-RB | 1707 | CG9750-RB | 176..1622 | 17..1463 | 7235 | 100 | Plus |
rept-RC | 1714 | CG9750-RC | 118..1564 | 17..1463 | 7235 | 100 | Plus |
rept-RA | 1772 | CG9750-RA | 176..1622 | 17..1463 | 7235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19255515..19256961 | 17..1463 | 7235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:02:31 has no hits.
BS05147.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:12 Download gff for
BS05147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 162..1619 | 9..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:17 Download gff for
BS05147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 176..1621 | 17..1462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:58 Download gff for
BS05147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 168..1613 | 17..1462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:35 Download gff for
BS05147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rept-RA | 176..1621 | 17..1462 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:35 Download gff for
BS05147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19255515..19256960 | 17..1462 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:17 Download gff for
BS05147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19248615..19250060 | 17..1462 | 100 | | Plus |
BS05147.pep Sequence
Translation from 16 to 1461
> BS05147.pep
MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARR
AAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMS
GSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGT
GQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNK
LGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRT
HGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHML
DIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRM
IIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQ
LITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSE
ITEEVERDPAAGGGAKRRVEGGGGDAQPMEH*
BS05147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rept-PB | 481 | CG9750-PB | 1..481 | 1..481 | 2427 | 100 | Plus |
rept-PC | 481 | CG9750-PC | 1..481 | 1..481 | 2427 | 100 | Plus |
rept-PA | 481 | CG9750-PA | 1..481 | 1..481 | 2427 | 100 | Plus |
pont-PA | 456 | CG4003-PA | 5..455 | 8..447 | 980 | 45.3 | Plus |