Clone BS05147 Report

Search the DGRC for BS05147

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:51
Well:47
Vector:pDNR-Dual
Associated Gene/Transcriptrept-RA
Protein status:BS05147.pep: full length peptide match
Sequenced Size:1478

Clone Sequence Records

BS05147.3prime Sequence

442 bp (360 high quality bases) assembled on 2005-12-02

> BS05147.3prime
ATGGTCTAGAAAGCTTCTAGTGCTCCATGGGCTGGGCATCTCCTCCGCCG
CCCTCCACGCGACGCTTTGCCCCGCCTCCAGCGGCCGGGTCCCTTTCCAC
CTCCTCGGTGATCTCGCTGAACATGTAGTCATCCTGGTACTCCTTGAGGA
TCTTGCTCGAGCGATTCTCGTCCAGGAAGAGCGAGTAGACCTTCTTCACA
TCCTCGGTATTGACTTCGGTGGCCTTGCGGCGACGACAGACCAAGTTGGC
TGTGGTAATCAGTTGGATGGCGTAGCGTAAACTGGTATCTGTGGCGATGC
GTGTAAGAATGGTCAGGGCATCCGGGTGCATGATGCAGTCCTCCTCCTCG
CAGCGAATCTTTAGGATCTCCTTAACCTCCTTCTCGGAATACGGTACAGT
GCGTATGATGATCATGCGATCGAGTAGATCAATGGGTATGCC

BS05147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9750-PA 1446 rept-RA 1021..1446 442..17 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RB 1707 CG9750-RB 1196..1622 442..16 2135 100 Minus
rept-RC 1714 CG9750-RC 1138..1564 442..16 2135 100 Minus
rept-RA 1772 CG9750-RA 1196..1622 442..16 2135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19256535..19256961 442..16 2135 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:05:42 has no hits.

BS05147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:02:59 Download gff for BS05147.3prime
Subject Subject Range Query Range Percent Splice Strand
rept-PA 1021..1446 17..442 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:28:59 Download gff for BS05147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9750-PA 1021..1446 17..442 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:32:30 Download gff for BS05147.3prime
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1196..1627 7..442 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:32 Download gff for BS05147.3prime
Subject Subject Range Query Range Percent Splice Strand
rept-RA 1196..1627 7..442 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:32 Download gff for BS05147.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19256535..19256966 7..442 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:32:30 Download gff for BS05147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19249635..19250066 7..442 99   Minus

BS05147.5prime Sequence

419 bp (361 high quality bases) assembled on 2005-12-02

> BS05147.5prime
GAAGTTATCAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACG
TGACTCGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGA
CTGGACGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCA
GAAGGACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGG
GCAAGATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGC
AAAACGGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCC
ATTCACTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGA
CCGAGGCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAG
GAGGAAACCGAGATCATCG

BS05147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9750-PA 1446 rept-RA 1..403 17..419 2015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RB 1707 CG9750-RB 176..578 17..419 2015 100 Plus
rept-RC 1714 CG9750-RC 118..520 17..419 2015 100 Plus
rept-RA 1772 CG9750-RA 176..578 17..419 2015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19255515..19255917 17..419 2015 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:21:47 has no hits.

BS05147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:03:00 Download gff for BS05147.5prime
Subject Subject Range Query Range Percent Splice Strand
rept-PA 1..403 17..419 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:29:00 Download gff for BS05147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9750-PA 1..403 17..419 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:50:25 Download gff for BS05147.5prime
Subject Subject Range Query Range Percent Splice Strand
rept-RA 170..578 9..419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:35 Download gff for BS05147.5prime
Subject Subject Range Query Range Percent Splice Strand
rept-RA 170..578 9..419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:35 Download gff for BS05147.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19255509..19255917 9..419 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:50:25 Download gff for BS05147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19248609..19249017 9..419 99   Plus

BS05147.complete Sequence

1478 bp assembled on 2008-08-14

GenBank Submission: FJ635063

> BS05147.complete
GAAGTTATCAGTCGACATGGCCGAGACCGAGAAAATCGAGGTTCGCGACG
TGACTCGCATCGAGCGCATTGGCGCCCATTCGCATATCCGCGGATTGGGA
CTGGACGATGTGCTGGAGGCTCGTCTGGTATCCCAGGGAATGGTGGGCCA
GAAGGACGCGCGCCGTGCCGCCGGCGTTGTGGTGCAGATGGTTCGCGAGG
GCAAGATCGCCGGAAGATGTATCCTATTGGCCGGGGAGCCTAGTACCGGC
AAAACGGCCATTGCTGTGGGAATGGCGCAGGCTCTGGGCACCGAGACCCC
ATTCACTAGCATGTCCGGATCGGAGATATACTCGCTGGAGATGAGCAAGA
CCGAGGCTCTGTCACAGGCACTGCGCAAGAGCATTGGCGTTCGCATCAAG
GAGGAAACCGAGATCATCGAGGGCGAAGTGGTGGAGATCCAGATCGAACG
CCCCGCCTCGGGTACCGGACAGAAGGTGGGCAAGGTCACCCTCAAGACCA
CCGAGATGGAAACCAACTACGATCTGGGCAACAAGATCATCGAGTGCTTC
ATGAAAGAGAAGATCCAGGCTGGCGATGTGATCACCATCGACAAGGCGTC
CGGAAAGGTCAACAAGCTGGGTCGCAGCTTCACCAGAGCCAGGGACTACG
ACGCCACTGGCGCTCAGACCAGATTCGTCCAATGCCCCGAGGGTGAGCTT
CAAAAACGCAAGGAGGTGGTGCACACTGTGACCCTACACGAGATCGATGT
TATCAATAGTCGCACCCACGGGTTCTTGGCCCTGTTCTCCGGCGATACTG
GAGAGATCAAGCAGGAGGTTCGCGATCAGATCAACAACAAGGTTCTCGAG
TGGCGCGAGGAGGGCAAAGCTGAGATAAATCCGGGAGTACTCTTCATAGA
CGAGGTGCACATGCTGGACATTGAGTGCTTCTCCTTCCTGAATCGCGCCC
TGGAGTCGGACATGGCTCCGGTGGTGGTGATGGCCACCAACCGCGGCATC
ACTCGTATTAGGGGCACTAACTATCGCAGTCCGCACGGCATACCCATTGA
TCTACTCGATCGCATGATCATCATACGCACTGTACCGTATTCCGAGAAGG
AGGTTAAGGAGATCCTAAAGATTCGCTGCGAGGAGGAGGACTGCATCATG
CACCCGGATGCCCTGACCATTCTTACACGCATCGCCACAGATACCAGTTT
ACGCTACGCCATCCAACTGATTACCACAGCCAACTTGGTCTGTCGTCGCC
GCAAGGCCACCGAAGTCAATACCGAGGATGTGAAGAAGGTCTACTCGCTC
TTCCTGGACGAGAATCGCTCGAGCAAGATCCTCAAGGAGTACCAGGATGA
CTACATGTTCAGCGAGATCACCGAGGAGGTGGAAAGGGACCCGGCCGCTG
GAGGCGGGGCAAAGCGTCGCGTGGAGGGCGGCGGAGGAGATGCCCAGCCC
ATGGAGCACTAGAAGCTTTCTAGACCAT

BS05147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RB 1446 CG9750-PB 1..1446 17..1462 7230 100 Plus
rept-RC 1446 CG9750-PC 1..1446 17..1462 7230 100 Plus
rept-RA 1446 CG9750-PA 1..1446 17..1462 7230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
rept-RB 1707 CG9750-RB 176..1622 17..1463 7235 100 Plus
rept-RC 1714 CG9750-RC 118..1564 17..1463 7235 100 Plus
rept-RA 1772 CG9750-RA 176..1622 17..1463 7235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19255515..19256961 17..1463 7235 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:02:31 has no hits.

BS05147.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:12 Download gff for BS05147.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 162..1619 9..1472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:17 Download gff for BS05147.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 176..1621 17..1462 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:58 Download gff for BS05147.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 168..1613 17..1462 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:35 Download gff for BS05147.complete
Subject Subject Range Query Range Percent Splice Strand
rept-RA 176..1621 17..1462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:35 Download gff for BS05147.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19255515..19256960 17..1462 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:17 Download gff for BS05147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19248615..19250060 17..1462 100   Plus

BS05147.pep Sequence

Translation from 16 to 1461

> BS05147.pep
MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARR
AAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMS
GSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGT
GQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNK
LGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRT
HGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHML
DIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRM
IIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQ
LITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSE
ITEEVERDPAAGGGAKRRVEGGGGDAQPMEH*

BS05147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
rept-PB 481 CG9750-PB 1..481 1..481 2427 100 Plus
rept-PC 481 CG9750-PC 1..481 1..481 2427 100 Plus
rept-PA 481 CG9750-PA 1..481 1..481 2427 100 Plus
pont-PA 456 CG4003-PA 5..455 8..447 980 45.3 Plus